lamindb 0.70.2__py3-none-any.whl → 0.70.4__py3-none-any.whl

lamindb/__init__.py

@@ -40,7 +40,7 @@ Modules & settings:
 
 """
 
-__version__ = "0.70.2"  # denote a release candidate for 0.1.0 with 0.1rc1
+__version__ = "0.70.4"  # denote a release candidate for 0.1.0 with 0.1rc1
 
 import os as _os
 

lamindb/_annotate.py

@@ -1,6 +1,6 @@
 from __future__ import annotations
 
-from typing import TYPE_CHECKING, Iterable, Optional
+from typing import TYPE_CHECKING, Iterable
 
 import anndata as ad
 import lamindb_setup as ln_setup
@@ -10,6 +10,7 @@ from lamindb_setup.core._docs import doc_args
 from lnschema_core import Artifact, Collection, Feature, Registry, Run, ULabel
 
 if TYPE_CHECKING:
+    from lamindb_setup.core.types import UPathStr
     from lnschema_core.types import FieldAttr
     from mudata import MuData
 
@@ -244,7 +245,7 @@ class DataFrameAnnotator:
         )
         return self._validated
 
-    def save_artifact(self, description: str, **kwargs) -> Artifact:
+    def save_artifact(self, description: str | None = None, **kwargs) -> Artifact:
         """Save the validated DataFrame and metadata.
 
         Args:
@@ -327,10 +328,10 @@ class DataFrameAnnotator:
 
 
 class AnnDataAnnotator(DataFrameAnnotator):
-    """Annotation flow for an ``AnnData`` object.
+    """Annotation flow for ``AnnData``.
 
     Args:
-        adata: The AnnData object to annotate.
+        data: The AnnData object or an AnnData-like path.
         var_index: The registry field for mapping the ``.var`` index.
         categoricals: A dictionary mapping ``.obs.columns`` to a registry field.
         using: A reference LaminDB instance.
@@ -349,14 +350,29 @@ class AnnDataAnnotator(DataFrameAnnotator):
 
     def __init__(
         self,
-        adata: ad.AnnData,
+        data: ad.AnnData | UPathStr,
         var_index: FieldAttr,
         categoricals: dict[str, FieldAttr] | None = None,
         using: str = "default",
         verbosity: str = "hint",
         organism: str | None = None,
     ) -> None:
-        self._adata = adata
+        from lamindb_setup.core import upath
+
+        from ._artifact import data_is_anndata
+
+        if not data_is_anndata(data):
+            raise ValueError(
+                "data has to be an AnnData object or a path to AnnData-like"
+            )
+        if isinstance(data, ad.AnnData):
+            self._adata = data
+        else:
+            from lamindb.core.storage._backed_access import backed_access
+
+            self._adata = backed_access(upath.create_path(data))
+
+        self._data = data
         self._var_field = var_index
         super().__init__(
             df=self._adata.obs,
@@ -443,7 +459,7 @@ class AnnDataAnnotator(DataFrameAnnotator):
         self._validated = validated_var and validated_obs
         return self._validated
 
-    def save_artifact(self, description: str, **kwargs) -> Artifact:
+    def save_artifact(self, description: str | None = None, **kwargs) -> Artifact:
         """Save the validated ``AnnData`` and metadata.
 
         Args:
@@ -457,7 +473,8 @@ class AnnDataAnnotator(DataFrameAnnotator):
             raise ValidationError("Please run `validate()` first!")
 
         self._artifact = save_artifact(
-            self._adata,
+            self._data,
+            adata=self._adata,
             description=description,
             columns_field=self.var_index,
             fields=self.categoricals,
@@ -697,7 +714,7 @@ class MuDataAnnotator:
         self._validated = validated_var and validated_obs
         return self._validated
 
-    def save_artifact(self, description: str, **kwargs) -> Artifact:
+    def save_artifact(self, description: str | None = None, **kwargs) -> Artifact:
         """Save the validated ``MuData`` and metadata.
 
         Args:
@@ -749,7 +766,7 @@ class Annotate:
     @doc_args(AnnDataAnnotator.__doc__)
     def from_anndata(
         cls,
-        adata: ad.AnnData,
+        data: ad.AnnData | UPathStr,
         var_index: FieldAttr,
         categoricals: dict[str, FieldAttr] | None = None,
         using: str = "default",
@@ -758,7 +775,7 @@ class Annotate:
     ) -> AnnDataAnnotator:
         """{}."""
         return AnnDataAnnotator(
-            adata=adata,
+            data=data,
             var_index=var_index,
             categoricals=categoricals,
             using=using,
@@ -920,10 +937,11 @@ def validate_categories_in_df(
 
 def save_artifact(
     data: pd.DataFrame | ad.AnnData | MuData,
-    description: str,
     fields: dict[str, FieldAttr] | dict[str, dict[str, FieldAttr]],
     columns_field: FieldAttr | dict[str, FieldAttr],
+    description: str | None = None,
     organism: str | None = None,
+    adata: ad.AnnData | None = None,
     **kwargs,
 ) -> Artifact:
     """Save all metadata with an Artifact.
@@ -934,15 +952,21 @@ def save_artifact(
         fields: A dictionary mapping obs_column to registry_field.
         columns_field: The registry field to validate variables index against.
         organism: The organism name.
+        adata: The AnnData object to save, must be provided if data is a path.
         kwargs: Additional keyword arguments to pass to the registry model.
 
     Returns:
         The saved Artifact.
     """
+    from ._artifact import data_is_anndata
+
     artifact = None
-    if isinstance(data, ad.AnnData):
+    if data_is_anndata(data):
+        assert adata is not None
         artifact = Artifact.from_anndata(data, description=description, **kwargs)
-        artifact.n_observations = data.n_obs
+        artifact.n_observations = adata.shape[0]
+        data = adata
+
     elif isinstance(data, pd.DataFrame):
         artifact = Artifact.from_df(data, description=description, **kwargs)
     else:

lamindb/_artifact.py

@@ -1,7 +1,7 @@
 from __future__ import annotations
 
 from pathlib import Path, PurePath, PurePosixPath
-from typing import TYPE_CHECKING, Any
+from typing import TYPE_CHECKING, Any, Mapping
 
 import fsspec
 import lamindb_setup as ln_setup
@@ -26,7 +26,7 @@ from lnschema_core.types import (
 )
 
 from lamindb._utils import attach_func_to_class_method
-from lamindb.core._data import _track_run_input
+from lamindb.core._data import Data, _track_run_input
 from lamindb.core._settings import settings
 from lamindb.core.storage import (
     LocalPathClasses,
@@ -53,6 +53,14 @@ from .core._data import (
 from .core.storage.objects import _mudata_is_installed
 from .core.storage.paths import AUTO_KEY_PREFIX
 
+try:
+    from .core.storage._zarr import zarr_is_adata
+except ImportError:
+
+    def zarr_is_adata(storepath):  # type: ignore
+        raise ImportError("Please install zarr: pip install zarr")
+
+
 if TYPE_CHECKING:
     from lamindb_setup.core.types import UPathStr
     from mudata import MuData
@@ -329,16 +337,17 @@ def get_artifact_kwargs_from_data(
         using_key=using_key,
     )
     if isinstance(stat_or_artifact, Artifact):
+        artifact = stat_or_artifact
         # update the run of the existing artifact
         if run is not None:
             # save the information that this artifact was previously
             # produced by another run
-            if stat_or_artifact.run is not None:
-                stat_or_artifact.run.replicated_output_artifacts.add(stat_or_artifact)
+            if artifact.run is not None:
+                artifact.run.replicated_output_artifacts.add(artifact)
             # update the run of the artifact with the latest run
             stat_or_artifact.run = run
             stat_or_artifact.transform = run.transform
-        return stat_or_artifact, None
+        return artifact, None
     else:
         size, hash, hash_type, n_objects = stat_or_artifact
 
@@ -446,12 +455,19 @@ def data_is_anndata(data: AnnData | UPathStr):
     if isinstance(data, AnnData):
         return True
     if isinstance(data, (str, Path, UPath)):
-        if Path(data).suffix == ".h5ad":
+        data_path = UPath(data)
+        if data_path.suffix == ".h5ad":
             return True
-        elif Path(data).suffix == ".zarr":
-            raise NotImplementedError(
-                "auto-detecting AnnData from Zarr is not yet supported"
-            )
+        elif data_path.suffix == ".zarr":
+            # ".anndata.zarr" is a valid suffix (core.storage._valid_suffixes)
+            if ".anndata" in data_path.suffixes:
+                return True
+            # check only for local, expensive for cloud
+            if fsspec.utils.get_protocol(data_path.as_posix()) == "file":
+                return zarr_is_adata(data_path)
+            else:
+                logger.warning("We do not check if cloud zarr is AnnData or not.")
+                return False
     return False
 
 
@@ -461,27 +477,39 @@ def data_is_mudata(data: MuData | UPathStr):
 
         if isinstance(data, MuData):
             return True
-    if isinstance(data, (str, Path, UPath)):
-        return Path(data).suffix in {".h5mu"}
+    if isinstance(data, (str, Path)):
+        return UPath(data).suffix in {".h5mu"}
     return False
 
 
 def _check_accessor_artifact(data: Any, accessor: str | None = None):
-    if accessor is None and not isinstance(data, (str, Path, UPath)):
+    if accessor is None:
         if isinstance(data, pd.DataFrame):
             logger.warning("data is a DataFrame, please use .from_df()")
             accessor = "DataFrame"
-        elif data_is_anndata(data):
-            logger.warning("data is an AnnData, please use .from_anndata()")
+            return accessor
+
+        data_is_path = isinstance(data, (str, Path))
+        if data_is_anndata(data):
+            if not data_is_path:
+                logger.warning("data is an AnnData, please use .from_anndata()")
             accessor = "AnnData"
         elif data_is_mudata(data):
-            logger.warning("data is a MuData, please use .from_mudata()")
+            if not data_is_path:
+                logger.warning("data is a MuData, please use .from_mudata()")
             accessor = "MuData"
-        else:
+        elif not data_is_path:  # UPath is a subclass of Path
             raise TypeError("data has to be a string, Path, UPath")
     return accessor
 
 
+def update_attributes(data: Data, attributes: Mapping[str, str]):
+    for key, value in attributes.items():
+        if getattr(data, key) != value:
+            logger.warning(f"updated {key} from {getattr(data, key)} to {value}")
+            setattr(data, key, value)
+
+
 def __init__(artifact: Artifact, *args, **kwargs):
     # Below checks for the Django-internal call in from_db()
     # it'd be better if we could avoid this, but not being able to create a Artifact
@@ -558,12 +586,29 @@ def __init__(artifact: Artifact, *args, **kwargs):
     if isinstance(kwargs_or_artifact, Artifact):
         from ._registry import init_self_from_db
 
-        # kwargs_or_artifact is an existing file
         init_self_from_db(artifact, kwargs_or_artifact)
+        # adding "key" here is dangerous because key might be auto-populated
+        update_attributes(artifact, {"description": description})
+        if artifact.key != key:
+            logger.warning(
+                f"key {artifact.key} on existing artifact differs from passed key {key}"
+            )
         return None
     else:
         kwargs = kwargs_or_artifact
 
+    # in case we have a new version of a folder with a different hash, print a
+    # warning that the old version can't be recovered
+    if (
+        is_new_version_of is not None
+        and is_new_version_of.n_objects is not None
+        and is_new_version_of.n_objects > 1
+    ):
+        logger.warning(
+            f"artifact version {version} will _update_ the state of folder {is_new_version_of.path} - "
+            "to _retain_ the old state by duplicating the entire folder, do _not_ pass `is_new_version_of`"
+        )
+
     kwargs["uid"] = provisional_uid
     kwargs["version"] = version
     kwargs["description"] = description
@@ -619,7 +664,7 @@ def from_df(
 @doc_args(Artifact.from_anndata.__doc__)
 def from_anndata(
     cls,
-    adata: AnnData,
+    adata: AnnData | UPathStr,
     key: str | None = None,
     description: str | None = None,
     run: Run | None = None,
@@ -628,6 +673,8 @@ def from_anndata(
     **kwargs,
 ) -> Artifact:
     """{}."""
+    if not data_is_anndata(adata):
+        raise ValueError("data has to be an AnnData object or a path to AnnData-like")
     artifact = Artifact(
         data=adata,
         key=key,
@@ -883,7 +930,7 @@ def delete(
 ) -> None:
     # by default, we only move artifacts into the trash (visibility = -1)
     trash_visibility = VisibilityChoice.trash.value
-    if self.visibility > trash_visibility and permanent is not True:
+    if self.visibility > trash_visibility and not permanent:
         if storage is not None:
             logger.warning("moving artifact to trash, storage arg is ignored")
         # move to trash
@@ -902,41 +949,44 @@ def delete(
         )
         delete_record = response == "y"
     else:
-        # this second option doesn't feel very intuitive
-        delete_record = permanent
+        assert permanent
+        delete_record = True
 
-    if delete_record is True:
+    if delete_record:
         # need to grab file path before deletion
         try:
-            filepath = filepath_from_artifact(self, using_key)
+            path = filepath_from_artifact(self, using_key)
         except OSError:
             # we can still delete the record
+            logger.warning("Could not get path")
             storage = False
         # only delete in storage if DB delete is successful
         # DB delete might error because of a foreign key constraint violated etc.
         self._delete_skip_storage()
         if self.key is None or self.key_is_virtual:
-            # always delete in storage if the key is virtual
-            delete_in_storage = True
-            if storage is not None:
-                logger.warning("storage arg is ignored if storage key is non-semantic")
+            # do not ask for confirmation also if storage is None
+            delete_in_storage = storage is None or storage
         else:
             # for artifacts with non-virtual semantic storage keys (key is not None)
             # ask for extra-confirmation
             if storage is None:
                 response = input(
-                    f"Are you sure to want to delete {filepath}? (y/n)  You can't undo"
+                    f"Are you sure to want to delete {path}? (y/n)  You can't undo"
                     " this action."
                 )
                 delete_in_storage = response == "y"
             else:
                 delete_in_storage = storage
+        if not delete_in_storage:
+            logger.warning(
+                f"you will retain a dangling store here: {path}, not referenced via an artifact"
+            )
         # we don't yet have logic to bring back the deleted metadata record
         # in case storage deletion fails - this is important for ACID down the road
-        if delete_in_storage is True:
-            delete_msg = delete_storage(filepath)
+        if delete_in_storage:
+            delete_msg = delete_storage(path)
             if delete_msg != "did-not-delete":
-                logger.success(f"deleted {colors.yellow(f'{filepath}')}")
+                logger.success(f"deleted {colors.yellow(f'{path}')}")
 
 
 def _delete_skip_storage(artifact, *args, **kwargs) -> None:

lamindb/_collection.py

@@ -18,13 +18,13 @@ from lamindb_setup.core.hashing import hash_set
 from lnschema_core.models import Collection, CollectionArtifact, FeatureSet
 from lnschema_core.types import VisibilityChoice
 
+from lamindb._artifact import update_attributes
 from lamindb._utils import attach_func_to_class_method
 from lamindb.core._data import _track_run_input
 from lamindb.core._mapped_collection import MappedCollection
 from lamindb.core.versioning import get_uid_from_old_version, init_uid
 
 from . import Artifact, Run
-from ._artifact import data_is_anndata
 from ._registry import init_self_from_db
 from .core._data import (
     add_transform_to_kwargs,
@@ -128,6 +128,7 @@ def __init__(
             existing_collection.run = run
             existing_collection.transform = run.transform
         init_self_from_db(collection, existing_collection)
+        update_attributes(collection, {"description": description, "name": name})
         for slot, feature_set in collection.features._feature_set_by_slot.items():
             if slot in feature_sets:
                 if not feature_sets[slot] == feature_set:

lamindb/_query_set.py

@@ -286,9 +286,11 @@ class QuerySet(models.QuerySet, CanValidate, IsTree):
 
 
 def filter_query_set_by_latest_version(ordered_query_set: QuerySet) -> RecordsList:
-    if len(ordered_query_set) == 0:
+    # evaluating length can be very costly, hence, the try-except block
+    try:
+        first_record = ordered_query_set[0]
+    except IndexError:
         return ordered_query_set
-    first_record = ordered_query_set[0]
     records_in_view = {}
     records_in_view[first_record.stem_uid] = first_record
     for record in ordered_query_set:

lamindb/_save.py

@@ -171,7 +171,7 @@ def copy_or_move_to_cache(artifact: Artifact, storage_path: UPath):
     cache_dir = settings._storage_settings.cache_dir
 
     # just delete from the cache dir if a local instance
-    if not lamindb_setup.settings.storage.is_cloud:
+    if not lamindb_setup.settings.storage.type_is_cloud:
         if cache_dir in local_path.parents:
             if is_dir:
                 shutil.rmtree(local_path)

lamindb/core/_data.py

@@ -357,7 +357,12 @@ def _track_run_input(
     is_run_input: bool | None = None,
     run: Run | None = None,
 ):
-    if run is None:
+    # this is an internal hack right now for project-flow, but we can allow this
+    # for the user in the future
+    if isinstance(is_run_input, Run):
+        run = is_run_input
+        is_run_input = True
+    elif run is None:
         run = run_context.run
     # consider that data is an iterable of Data
     data_iter: Iterable[Data] = [data] if isinstance(data, Data) else data

lamindb/core/_run_context.py

@@ -306,6 +306,11 @@ class run_context:
             if not is_tracked:
                 raise_transform_settings_error()
         else:
+            if transform.type in {"notebook", "script"}:
+                raise ValueError(
+                    "Use ln.track() without passing transform in a notebook or script"
+                    " - metadata is automatically parsed"
+                )
             transform_exists = None
             if transform.id is not None:
                 # transform has an id but unclear whether already saved

lamindb/core/storage/_zarr.py

@@ -7,28 +7,44 @@ import scipy.sparse as sparse
 import zarr
 from anndata._io import read_zarr
 from anndata._io.specs import write_elem
+from anndata._io.specs.registry import get_spec
+from fsspec.implementations.local import LocalFileSystem
 from lamindb_setup.core.upath import create_mapper, infer_filesystem
 
 from ._anndata_sizes import _size_elem, _size_raw, size_adata
 
 if TYPE_CHECKING:
     from anndata import AnnData
-
-
-def read_adata_zarr(storepath) -> AnnData:
-    fs, storepath = infer_filesystem(storepath)
-    store = create_mapper(fs, storepath, check=True)
-
-    adata = read_zarr(store)
-
+    from lamindb_setup.core.types import UPathStr
+
+
+def zarr_is_adata(storepath: UPathStr) -> bool:
+    fs, storepath_str = infer_filesystem(storepath)
+    if isinstance(fs, LocalFileSystem):
+        # this is faster than through an fsspec mapper for local
+        open_obj = storepath_str
+    else:
+        open_obj = create_mapper(fs, storepath_str, check=True)
+    storage = zarr.open(open_obj, mode="r")
+    return get_spec(storage).encoding_type == "anndata"
+
+
+def read_adata_zarr(storepath: UPathStr) -> AnnData:
+    fs, storepath_str = infer_filesystem(storepath)
+    if isinstance(fs, LocalFileSystem):
+        # this is faster than through an fsspec mapper for local
+        open_obj = storepath_str
+    else:
+        open_obj = create_mapper(fs, storepath_str, check=True)
+    adata = read_zarr(open_obj)
     return adata
 
 
 def write_adata_zarr(
-    adata: AnnData, storepath, callback=None, chunks=None, **dataset_kwargs
+    adata: AnnData, storepath: UPathStr, callback=None, chunks=None, **dataset_kwargs
 ):
-    fs, storepath = infer_filesystem(storepath)
-    store = create_mapper(fs, storepath, create=True)
+    fs, storepath_str = infer_filesystem(storepath)
+    store = create_mapper(fs, storepath_str, create=True)
 
     f = zarr.open(store, mode="w")
 

lamindb/core/storage/paths.py

@@ -29,7 +29,7 @@ try:
     from ._zarr import read_adata_zarr
 except ImportError:
 
-    def read_adata_zarr(filepath):  # type: ignore
+    def read_adata_zarr(storepath):  # type: ignore
         raise ImportError("Please install zarr: pip install zarr")
 
 
@@ -114,7 +114,7 @@ def store_file_or_folder(local_path: UPathStr, storage_path: UPath) -> None:
     local_path = Path(local_path)
     if not isinstance(storage_path, LocalPathClasses):
         # this uploads files and directories
-        storage_path.upload_from(local_path, recursive=True, print_progress=True)
+        storage_path.upload_from(local_path, dir_inplace=True, print_progress=True)
     else:  # storage path is local
         storage_path.parent.mkdir(parents=True, exist_ok=True)
         if local_path.is_file():

lamindb/integrations/_vitessce.py

@@ -39,15 +39,15 @@ def save_vitessce_config(vitessce_config: VitessceConfig, description: str) -> A
             if "url" not in file:
                 raise ValueError("Each file must have a 'url' key.")
             filename = file["url"].split("/")[-1]
-            assert filename.endswith((".anndata.zarr", ".spatialdata.zarr", ".zarr"))
-            filestem = (
-                filename.replace(".anndata.zarr", "")
-                .replace(".spatialdata.zarr", "")
-                .replace(".zarr", "")
+            assert filename.endswith((".anndata.zarr", ".spatialdata.zarr"))
+            filestem = filename.replace(".anndata.zarr", "").replace(
+                ".spatialdata.zarr", ""
             )
             artifact = Artifact.filter(uid__startswith=filestem).one_or_none()
             if artifact is None:
-                logger.warning(f"could not find dataset in lamindb: {dataset}")
+                logger.warning(
+                    f"could not find dataset '{filestem}' in lamindb: {dataset}"
+                )
             else:
                 input_artifacts.append(artifact)
     # link inputs

{lamindb-0.70.2.dist-info → lamindb-0.70.4.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: lamindb
-Version: 0.70.2
+Version: 0.70.4
 Summary: A data framework for biology.
 Author-email: Lamin Labs <open-source@lamin.ai>
 Requires-Python: >=3.8
@@ -9,8 +9,8 @@ Classifier: Programming Language :: Python :: 3.8
 Classifier: Programming Language :: Python :: 3.9
 Classifier: Programming Language :: Python :: 3.10
 Classifier: Programming Language :: Python :: 3.11
-Requires-Dist: lnschema_core==0.65.1
-Requires-Dist: lamindb_setup==0.69.4
+Requires-Dist: lnschema_core==0.65.2
+Requires-Dist: lamindb_setup==0.70.0
 Requires-Dist: lamin_utils==0.13.2
 Requires-Dist: lamin_cli==0.12.3
 Requires-Dist: rapidfuzz
@@ -38,7 +38,7 @@ Requires-Dist: pytest-cov ; extra == "dev"
 Requires-Dist: nbproject_test>=0.5.1 ; extra == "dev"
 Requires-Dist: faker-biology ; extra == "dev"
 Requires-Dist: django-schema-graph ; extra == "erdiagram"
-Requires-Dist: readfcs>=1.1.7 ; extra == "fcs"
+Requires-Dist: readfcs>=1.1.8 ; extra == "fcs"
 Requires-Dist: fsspec[gs]==2023.12.2 ; extra == "gcp"
 Requires-Dist: nbproject==0.10.0 ; extra == "jupyter"
 Requires-Dist: nbstripout==0.6.1 ; extra == "jupyter"

{lamindb-0.70.2.dist-info → lamindb-0.70.4.dist-info}/RECORD

@@ -1,8 +1,8 @@
-lamindb/__init__.py,sha256=JHrhBHkihUcLRbreh9xyafsWang75NJxz9CVIWx6Bc0,2163
-lamindb/_annotate.py,sha256=B0KSvo5S2kJPeMMqy2SSFkqRJCS2QRC4NtI0_vWEZMs,43080
-lamindb/_artifact.py,sha256=BUl_3WYwrZ28P93Pb9AiwriVFBSLvBUEQjYEyYCrkZ0,37307
+lamindb/__init__.py,sha256=n_WJSqcrctVzdr83pL8gZ--FI9vu1ZoqTL5AXEdq8LA,2163
+lamindb/_annotate.py,sha256=kgbilILfgzoS-GEpjxzVwRMs7CoSa9BNEcIWXFBW69I,43915
+lamindb/_artifact.py,sha256=E104JM5_Brw7BxJLBTE0acl7Oz7j5R7pPgVgrbHz79I,39279
 lamindb/_can_validate.py,sha256=nvoZG-35n3HofkY4Xc6hBv9AV54_RDan7Hzp5TuqY9I,14709
-lamindb/_collection.py,sha256=wf7ClfiD3vsetts_iSUk4UihWsHq0IdOF8LdIIHS7JU,14536
+lamindb/_collection.py,sha256=SDM35R_5WHrgLKjVb14Q8-Rz_gn5hdZLJobPcanm4PM,14627
 lamindb/_feature.py,sha256=srAKchY7gqD-h-cWlEiAWuHlpFKFwv0PWIA-JX0Go8c,6758
 lamindb/_feature_set.py,sha256=AzjOcHzQajpeikPOAic-aj0z_C5b7VpHVegg3ThRSLw,9045
 lamindb/_filter.py,sha256=xnjJzjF3Zj4dK_Kfymvhgczk27MhhXz5ZYc7XINbgHY,1331
@@ -11,21 +11,21 @@ lamindb/_from_values.py,sha256=DVXjnQ2wwNw-2bFzy0uXLdVlqoprrn95hTnrXwn-KqM,12638
 lamindb/_is_versioned.py,sha256=0PgRCmxEmYDcAjllLSOYZm132B1lW6QgmBBERhRyFt0,1341
 lamindb/_parents.py,sha256=N9T8jbd3eaoHDLE9TD1y1QgGcO81E6Brapy8LILzRCQ,14790
 lamindb/_query_manager.py,sha256=3zokXqxgj9vTJBnN2sbYKS-q69fyDDPF_aGq_rFHzXU,4066
-lamindb/_query_set.py,sha256=fy6xMK9MPGbD8D_i5iNzR8XA009W05ud4tbgrzd5-Vg,11287
+lamindb/_query_set.py,sha256=K_0rJ6Keltl3Pvglvd7kkzkJEy2u6Kp0TKiHLzwqH18,11359
 lamindb/_registry.py,sha256=-Bv10zSr6IY7QM5pu_35NiVjQDJnBcXRECVe9h7GEuY,19336
 lamindb/_run.py,sha256=b7A52M1On3QzFgIYyfQoz5Kk7V3wcu9p_Prq5bzd8v8,1838
-lamindb/_save.py,sha256=x16FBwltaTd1tnXm_zCxkvuVxyon6vRtekf37CfepXg,11426
+lamindb/_save.py,sha256=C4sPr0slgMmxDdiOcaLhIiHOqW9c3DnIz1uj9NlsnXQ,11431
 lamindb/_storage.py,sha256=VW8xq3VRv58-ciholvOdlcgvp_OIlLxx5GxLt-e2Irs,614
 lamindb/_transform.py,sha256=rxojJ91qQSkeYDHYbwqjFAYxBMgJd3cq_K7Z0n5g8Aw,3482
 lamindb/_ulabel.py,sha256=e5dw9h1tR0_u-DMn7Gzx0WhUhV5w7j4v3QbnLWQV7eI,1941
 lamindb/_utils.py,sha256=LGdiW4k3GClLz65vKAVRkL6Tw-Gkx9DWAdez1jyA5bE,428
 lamindb/_view.py,sha256=GV1FrqIMmdooEkA-5zvcTWgV1nqx1sehi6WdWEaFpxM,2171
 lamindb/core/__init__.py,sha256=MB1gEMKUf0GBQrI3dH8WRZOZQmWR4HIojXK_hXXVdqA,1235
-lamindb/core/_data.py,sha256=En3v29eiJARy5l7nSsttAsDsqDLTZ4-xM8fCNyVzExI,17465
+lamindb/core/_data.py,sha256=xULvge-txEO4r4amNQZRZTH3n3BqOLWauyNfxbB6WOA,17674
 lamindb/core/_feature_manager.py,sha256=LlYgU71AoTnrseWFCq-oZkUAYWITtRR7BNFm0AhHe-c,15773
 lamindb/core/_label_manager.py,sha256=0RtegYnK3zIisOnd970EobOrHMpp7OCH-mEoPrPXw2c,9075
 lamindb/core/_mapped_collection.py,sha256=_OwFZh5SePDUD70XIK5kngv3we_Z5-YdGHNfpUSatSQ,19469
-lamindb/core/_run_context.py,sha256=xcsPhpabm2a-PnwH-vDJ4Mx4qQLdFsn4ZUpWMWKZgoM,17472
+lamindb/core/_run_context.py,sha256=tqKPNkryy4yc7vtYSIfGjUu_pJSBQt1Kx8Cbq9vwXK8,17726
 lamindb/core/_settings.py,sha256=r9si7wJb31tI4vfz9dUN4iXe6QQU7FjnqAEsHy2UDzM,5727
 lamindb/core/_sync_git.py,sha256=IlTqw55inPp_RZbN_YScaCeKza7LeF9mClQw55W3_d4,3921
 lamindb/core/_track_environment.py,sha256=xLZ6kgzxWS6MWZ5LQ_wkbJX99vmYOT8iQ-Fz4OHCgWw,754
@@ -42,14 +42,14 @@ lamindb/core/storage/__init__.py,sha256=6jnbFj-eBV3xZt04qP-kTsMWoP8YwpM50wlnnxDY
 lamindb/core/storage/_anndata_sizes.py,sha256=aXO3OB--tF5MChenSsigW6Q-RuE8YJJOUTVukkLrv9A,1029
 lamindb/core/storage/_backed_access.py,sha256=eManrLsu3pSSQAyAKy47FDBm-iHgjaNfHA-zLy59uDs,24536
 lamindb/core/storage/_valid_suffixes.py,sha256=sewRRU3I6fJ-Jd5ACNcco_o3hic9zmqTs8BuZui-450,133
-lamindb/core/storage/_zarr.py,sha256=0i9-cJPjieIsp5UpK-IyRPkHAF-iKkWgpkWviSni2MM,2900
+lamindb/core/storage/_zarr.py,sha256=5ceEz6YIvgvUnVVNWhK5Z4W0WfrvyvY82Yna5jSX1_E,3661
 lamindb/core/storage/objects.py,sha256=5LbBeZVKuOOB8DceSE-PN8elKY0N9OhFXZPQJE4lK48,1538
-lamindb/core/storage/paths.py,sha256=XWfSHK5b3_TFiK-IMvH-srvxO0bZStzA_rwjNaTxQU4,7725
+lamindb/core/storage/paths.py,sha256=kvu4Xi4dvreXpg4iuskN_nd2yyGmEdCmoIfi3nCrTyo,7728
 lamindb/integrations/__init__.py,sha256=aH2PmO2m4-vwIifMYTB0Fyyr_gZWtVnV71jT0tVWSw0,123
-lamindb/integrations/_vitessce.py,sha256=Ii2YhGwXH_tNDS9MXzxNekthWoDmDGpgGxAOVcTIbB4,2550
+lamindb/integrations/_vitessce.py,sha256=b0FqTBsP-M6Q7xCYXVwFwM8DOIeeOBZEhYbryhtq4gk,2535
 lamindb/setup/__init__.py,sha256=OwZpZzPDv5lPPGXZP7-zK6UdO4FHvvuBh439yZvIp3A,410
 lamindb/setup/core/__init__.py,sha256=SevlVrc2AZWL3uALbE5sopxBnIZPWZ1IB0NBDudiAL8,167
-lamindb-0.70.2.dist-info/LICENSE,sha256=xx0jnfkXJvxRnG63LTGOxlggYnIysveWIZ6H3PNdCrQ,11357
-lamindb-0.70.2.dist-info/WHEEL,sha256=EZbGkh7Ie4PoZfRQ8I0ZuP9VklN_TvcZ6DSE5Uar4z4,81
-lamindb-0.70.2.dist-info/METADATA,sha256=KqXBjKMhKMBbx7VYeaWWfP0Xot_OyRRjpFO9vZotb7c,2835
-lamindb-0.70.2.dist-info/RECORD,,
+lamindb-0.70.4.dist-info/LICENSE,sha256=xx0jnfkXJvxRnG63LTGOxlggYnIysveWIZ6H3PNdCrQ,11357
+lamindb-0.70.4.dist-info/WHEEL,sha256=EZbGkh7Ie4PoZfRQ8I0ZuP9VklN_TvcZ6DSE5Uar4z4,81
+lamindb-0.70.4.dist-info/METADATA,sha256=tpsQ0FARcje5BTONwg1mer7gucqwICMw1RmApXGME0I,2835
+lamindb-0.70.4.dist-info/RECORD,,