lamindb 0.69.8__py3-none-any.whl → 0.69.10__py3-none-any.whl

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Files changed (23) hide show
  1. lamindb/__init__.py +1 -1
  2. lamindb/_annotate.py +461 -126
  3. lamindb/_artifact.py +50 -16
  4. lamindb/_can_validate.py +13 -18
  5. lamindb/_collection.py +35 -43
  6. lamindb/_feature_set.py +20 -8
  7. lamindb/_from_values.py +21 -16
  8. lamindb/_registry.py +7 -2
  9. lamindb/core/__init__.py +16 -4
  10. lamindb/core/_data.py +5 -16
  11. lamindb/core/_feature_manager.py +74 -25
  12. lamindb/core/_label_manager.py +1 -1
  13. lamindb/core/_mapped_collection.py +106 -52
  14. lamindb/core/datasets/_core.py +41 -1
  15. lamindb/core/storage/_backed_access.py +8 -4
  16. lamindb/core/storage/file.py +12 -0
  17. lamindb/core/storage/object.py +19 -0
  18. lamindb/core/types.py +0 -2
  19. lamindb/setup/core/__init__.py +3 -14
  20. {lamindb-0.69.8.dist-info → lamindb-0.69.10.dist-info}/METADATA +7 -8
  21. {lamindb-0.69.8.dist-info → lamindb-0.69.10.dist-info}/RECORD +23 -23
  22. {lamindb-0.69.8.dist-info → lamindb-0.69.10.dist-info}/LICENSE +0 -0
  23. {lamindb-0.69.8.dist-info → lamindb-0.69.10.dist-info}/WHEEL +0 -0
{lamindb-0.69.8.dist-info → lamindb-0.69.10.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: lamindb
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- Version: 0.69.8
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+ Version: 0.69.10
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  Summary: A data framework for biology.
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  Author-email: Lamin Labs <open-source@lamin.ai>
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  Requires-Python: >=3.8
@@ -9,15 +9,15 @@ Classifier: Programming Language :: Python :: 3.8
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  Classifier: Programming Language :: Python :: 3.9
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  Classifier: Programming Language :: Python :: 3.10
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  Classifier: Programming Language :: Python :: 3.11
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- Requires-Dist: lnschema_core==0.64.5
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- Requires-Dist: lamindb_setup==0.68.5
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+ Requires-Dist: lnschema_core==0.64.11
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+ Requires-Dist: lamindb_setup==0.69.0
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  Requires-Dist: lamin_utils==0.13.1
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- Requires-Dist: lamin_cli==0.12.0
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+ Requires-Dist: lamin_cli==0.12.2
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  Requires-Dist: rapidfuzz
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  Requires-Dist: pyarrow
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  Requires-Dist: typing_extensions!=4.6.0
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  Requires-Dist: python-dateutil
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- Requires-Dist: anndata>=0.8.0,<0.10.6
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+ Requires-Dist: anndata>=0.8.0,<0.10.8
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  Requires-Dist: scipy<1.13.0rc1
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  Requires-Dist: fsspec
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  Requires-Dist: pandas
@@ -27,7 +27,7 @@ Requires-Dist: urllib3<2 ; extra == "aws"
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  Requires-Dist: aiobotocore[boto3]>=2.5.4,<3.0.0 ; extra == "aws"
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  Requires-Dist: s3fs==2023.12.2 ; extra == "aws"
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  Requires-Dist: fsspec[s3]==2023.12.2 ; extra == "aws"
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- Requires-Dist: bionty==0.42.5 ; extra == "bionty"
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+ Requires-Dist: bionty==0.42.8 ; extra == "bionty"
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  Requires-Dist: pandas<2 ; extra == "dev"
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  Requires-Dist: pre-commit ; extra == "dev"
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  Requires-Dist: nox ; extra == "dev"
@@ -37,7 +37,6 @@ Requires-Dist: coverage ; extra == "dev"
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  Requires-Dist: pytest-cov ; extra == "dev"
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  Requires-Dist: nbproject_test>=0.5.1 ; extra == "dev"
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  Requires-Dist: faker-biology ; extra == "dev"
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- Requires-Dist: lamin_vault ; extra == "dev"
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  Requires-Dist: django-schema-graph ; extra == "erdiagram"
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  Requires-Dist: readfcs>=1.1.7 ; extra == "fcs"
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  Requires-Dist: fsspec[gs]==2023.12.2 ; extra == "gcp"
@@ -65,7 +64,7 @@ Provides-Extra: zarr
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  - Track data lineage across notebooks & pipelines.
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  - Integrate registries for experimental metadata & in-house ontologies.
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  - Validate, standardize & annotate.
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- - Collaborate across distributed LaminDB instances.
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+ - Collaborate across distributed databases.
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  ## Documentation
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{lamindb-0.69.8.dist-info → lamindb-0.69.10.dist-info}/RECORD RENAMED
@@ -1,18 +1,18 @@
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- lamindb/__init__.py,sha256=sZVLIGCk1KRIVzcEW76yuJ3Hcdhaz-ZbKi2OIEELTeE,2163
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- lamindb/_annotate.py,sha256=9YU0mC2ll8MDrgytFHy6xVBbHQSLRsYB9BlAu-3YA94,29918
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- lamindb/_artifact.py,sha256=mB8QyQKozzQsUxC8fOslwZyDegendQCR4BDIUJmAZ8M,35569
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- lamindb/_can_validate.py,sha256=rvoL5py40L5MldqYMm_vB-0x9pj1MDNhcSUDLumw-nc,14498
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- lamindb/_collection.py,sha256=w33zyFP5w4P5VoD8axwcZ_KPCqP2hjmWhIfOTtCjNN4,14418
1
+ lamindb/__init__.py,sha256=CV6kzbhp0QdBkY2VOTJYYsswxKzqvzSgqoDE3Bf-cFE,2164
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+ lamindb/_annotate.py,sha256=BXYWFATifbfRVmLFIgE4cZ4Fls4lkH2WXAEL2o7v-XM,43035
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+ lamindb/_artifact.py,sha256=OiM6BMz7Vm852QGvyr24QZlXU0dHRID6CF50U0cBVnE,36491
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+ lamindb/_can_validate.py,sha256=qA6Ni9scObcIeYzuudVymgOjQVLLxnGNofBSDNDaqfY,14557
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+ lamindb/_collection.py,sha256=xzya4M_vU8lp0nksqxj2BfSWOTwLTr9Sp6Kwp47so5g,13985
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  lamindb/_feature.py,sha256=srAKchY7gqD-h-cWlEiAWuHlpFKFwv0PWIA-JX0Go8c,6758
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- lamindb/_feature_set.py,sha256=x9e6VWKq4iM_jDy-Al_YXL3LYveG8NN22KVbfr1yYuA,8710
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+ lamindb/_feature_set.py,sha256=AzjOcHzQajpeikPOAic-aj0z_C5b7VpHVegg3ThRSLw,9045
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  lamindb/_filter.py,sha256=xnjJzjF3Zj4dK_Kfymvhgczk27MhhXz5ZYc7XINbgHY,1331
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  lamindb/_finish.py,sha256=4mCoDw24gXeOS_EALuUYIA57OqmcZWIi0Fk5fEDwmCg,8798
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- lamindb/_from_values.py,sha256=RaRMSTFM5j4Fn1rh-ezHdc5-F5AzMo85fVPqdZekMyo,11928
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+ lamindb/_from_values.py,sha256=OboM5lTysxjyu-wMWtD_Cw7SWJk8fG36tAQwb6FKM8k,12160
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  lamindb/_is_versioned.py,sha256=0PgRCmxEmYDcAjllLSOYZm132B1lW6QgmBBERhRyFt0,1341
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  lamindb/_parents.py,sha256=N9T8jbd3eaoHDLE9TD1y1QgGcO81E6Brapy8LILzRCQ,14790
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  lamindb/_query_manager.py,sha256=3zokXqxgj9vTJBnN2sbYKS-q69fyDDPF_aGq_rFHzXU,4066
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  lamindb/_query_set.py,sha256=fy6xMK9MPGbD8D_i5iNzR8XA009W05ud4tbgrzd5-Vg,11287
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- lamindb/_registry.py,sha256=Lc_0kBi984RuQM_rnwiDQbvRryEZZrQliFEkazOjVd0,19161
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+ lamindb/_registry.py,sha256=CL-KlCC23HPWQgSeYg7Od2kbZdNViAjFqqdiGpKJKw8,19293
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  lamindb/_run.py,sha256=b7A52M1On3QzFgIYyfQoz5Kk7V3wcu9p_Prq5bzd8v8,1838
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  lamindb/_save.py,sha256=aqvE0ryZs4-sDk6DZPn-Ki724gHeLyA9w-1oN5m_XMU,11425
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  lamindb/_storage.py,sha256=VW8xq3VRv58-ciholvOdlcgvp_OIlLxx5GxLt-e2Irs,614
@@ -20,11 +20,11 @@ lamindb/_transform.py,sha256=rxojJ91qQSkeYDHYbwqjFAYxBMgJd3cq_K7Z0n5g8Aw,3482
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  lamindb/_ulabel.py,sha256=e5dw9h1tR0_u-DMn7Gzx0WhUhV5w7j4v3QbnLWQV7eI,1941
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  lamindb/_utils.py,sha256=LGdiW4k3GClLz65vKAVRkL6Tw-Gkx9DWAdez1jyA5bE,428
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  lamindb/_view.py,sha256=GV1FrqIMmdooEkA-5zvcTWgV1nqx1sehi6WdWEaFpxM,2171
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- lamindb/core/__init__.py,sha256=Mw4sI-xgnMXNsu84oYFQBZOF8mxxxhp6-e3BjTQqjlA,1131
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- lamindb/core/_data.py,sha256=A8NUs2Ii2R4FC_31zFGsi3Dae4Rzs66JtAK9MYn6M0k,17262
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- lamindb/core/_feature_manager.py,sha256=pGRWUZ0hhGZcexD3LsSfGzfQUCit7FoIEwzt6HANowo,13914
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- lamindb/core/_label_manager.py,sha256=duThEEgQxdNQBeTE1ssXX0XujUQa_M14B9e1TQKPwsQ,9078
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- lamindb/core/_mapped_collection.py,sha256=nnXVqHAbSPe34lN79VthoAOkJVxSD6ZbzZqXgv9H6Y8,17244
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+ lamindb/core/__init__.py,sha256=MB1gEMKUf0GBQrI3dH8WRZOZQmWR4HIojXK_hXXVdqA,1235
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+ lamindb/core/_data.py,sha256=zxsrtf8a3PBzni1KLNVST45dxUgK11K7U6o9pmfK-xU,16905
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+ lamindb/core/_feature_manager.py,sha256=MHEU3I9m9p69TaTz1WTzAsimUan51RhxWV8G--_0BA8,15615
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+ lamindb/core/_label_manager.py,sha256=0RtegYnK3zIisOnd970EobOrHMpp7OCH-mEoPrPXw2c,9075
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+ lamindb/core/_mapped_collection.py,sha256=_OwFZh5SePDUD70XIK5kngv3we_Z5-YdGHNfpUSatSQ,19469
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  lamindb/core/_run_context.py,sha256=GS593lxHsbQyhbrp6ppzZ0r-fVe6W099NDXM6xyg8-U,17509
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  lamindb/core/_settings.py,sha256=32109tBsMcwdGlNTWAGR7YBuCVXrrVfzIEKHWVk1bBQ,5727
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  lamindb/core/_sync_git.py,sha256=IlTqw55inPp_RZbN_YScaCeKza7LeF9mClQw55W3_d4,3921
@@ -33,22 +33,22 @@ lamindb/core/_transform_settings.py,sha256=eV96QKX9jOojjzF-a0oo0wXQsMXN2F6QV7orE
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  lamindb/core/_view_tree.py,sha256=PTwmKZSQL2UhKuSdV5Wp7o1JDjv1qwgsVCj3ThkbKb8,3447
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  lamindb/core/exceptions.py,sha256=PHk5lyBdJPrrEQcid3ItfdNzz3fgiQsUmsEDdz063F0,197
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  lamindb/core/fields.py,sha256=Jgi_XI-iTe6cT7oD8FV_JqEpjN1Q9rZWwL8VLtj4jkA,164
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- lamindb/core/types.py,sha256=2CJdqGXxbYv4oOB_t6p2PJdg_5j9qDUSJJYEV-lcnqA,256
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+ lamindb/core/types.py,sha256=xeQF2x40p2pR9eIVQrXT74RrS810z2fbjmTRTSQUqPM,230
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  lamindb/core/versioning.py,sha256=DsEHpCueNwhRiIaRH5-O8H_1fJVNtWslCRx30YiIS5o,3080
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  lamindb/core/datasets/__init__.py,sha256=zRP98oqUAaXhqWyKMiH0s_ImVIuNeziQQ2kQ_t0f-DI,1353
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- lamindb/core/datasets/_core.py,sha256=o1c8vGhO-Hss-osBGdxldDFYh_hwsksh8H1bm6rYIi0,18861
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+ lamindb/core/datasets/_core.py,sha256=ZPsDETZp-SqQelK5O0l7sDZFjuz8Sy93UbTfSYqP9cc,20191
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  lamindb/core/datasets/_fake.py,sha256=BZF9R_1iF0HDnvtZNqL2FtsjSMuqDIfuFxnw_LJYIh4,953
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  lamindb/core/storage/__init__.py,sha256=9alBNtyH59VnoWJS-IdjLwFKlK-kgeCGl6jXk0_wGeQ,369
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  lamindb/core/storage/_anndata_sizes.py,sha256=aXO3OB--tF5MChenSsigW6Q-RuE8YJJOUTVukkLrv9A,1029
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- lamindb/core/storage/_backed_access.py,sha256=6grFzub43w_k-Zxa4iqSY6GAoCewE1FZTx52wfGKZIg,24383
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+ lamindb/core/storage/_backed_access.py,sha256=uW0zaeKune6k2zYJcLazIA7Xux9TS2tAHDNdz1syYZw,24557
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  lamindb/core/storage/_zarr.py,sha256=0i9-cJPjieIsp5UpK-IyRPkHAF-iKkWgpkWviSni2MM,2900
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- lamindb/core/storage/file.py,sha256=N_t_EiWP29XwMDsbVz1Kw2ksVBmXnHYkPtWEXemknOM,7287
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- lamindb/core/storage/object.py,sha256=5f_E4xLUjy4rG_klSmVjZWuVMxdzme-bQxCKfbY9nhM,1158
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+ lamindb/core/storage/file.py,sha256=AEMbrC6oWoIp3vs4F2bgm50EVBxkCGbN9R4na7Wanaw,7754
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+ lamindb/core/storage/object.py,sha256=37p8CSlfSlWPVuuD3MFcwQRj1n_kovLKVImh9SCR4Eg,1601
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  lamindb/integrations/__init__.py,sha256=aH2PmO2m4-vwIifMYTB0Fyyr_gZWtVnV71jT0tVWSw0,123
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  lamindb/integrations/_vitessce.py,sha256=xLlFr_GzoY5RjyouPFEO-W7crBlTVQdHR2ns1IcCZFc,1673
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  lamindb/setup/__init__.py,sha256=OwZpZzPDv5lPPGXZP7-zK6UdO4FHvvuBh439yZvIp3A,410
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- lamindb/setup/core/__init__.py,sha256=LqIIvJNcONxkqjbnP6CUaP4d45Lbd6TSMAcXFp4C7_8,231
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- lamindb-0.69.8.dist-info/LICENSE,sha256=xx0jnfkXJvxRnG63LTGOxlggYnIysveWIZ6H3PNdCrQ,11357
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- lamindb-0.69.8.dist-info/WHEEL,sha256=EZbGkh7Ie4PoZfRQ8I0ZuP9VklN_TvcZ6DSE5Uar4z4,81
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- lamindb-0.69.8.dist-info/METADATA,sha256=YmH_AI9gO24-zfttptrppfCdnp7c62ucvnN5xbW_ccw,2887
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- lamindb-0.69.8.dist-info/RECORD,,
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+ lamindb/setup/core/__init__.py,sha256=SevlVrc2AZWL3uALbE5sopxBnIZPWZ1IB0NBDudiAL8,167
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+ lamindb-0.69.10.dist-info/LICENSE,sha256=xx0jnfkXJvxRnG63LTGOxlggYnIysveWIZ6H3PNdCrQ,11357
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+ lamindb-0.69.10.dist-info/WHEEL,sha256=EZbGkh7Ie4PoZfRQ8I0ZuP9VklN_TvcZ6DSE5Uar4z4,81
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+ lamindb-0.69.10.dist-info/METADATA,sha256=R4DYvAOjBwW0ywfjHvYo4xLUABytQWm6iGg8LE8yfbU,2837
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+ lamindb-0.69.10.dist-info/RECORD,,