PyPI - lalsuite - Versions diffs - 7.26.2.dev20251210__cp312-cp312-macosx_12_0_arm64.whl - Mend

lalsuite 7.26.2.dev20251210__cp312-cp312-macosx_12_0_arm64.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (749) hide show

lal/.dylibs/Python +0 -0
lal/.dylibs/libaec.0.dylib +0 -0
lal/.dylibs/libbrotlicommon.1.2.0.dylib +0 -0
lal/.dylibs/libbrotlidec.1.2.0.dylib +0 -0
lal/.dylibs/libcfitsio.10.4.4.1.dylib +0 -0
lal/.dylibs/libcrypto.3.dylib +0 -0
lal/.dylibs/libcurl.4.dylib +0 -0
lal/.dylibs/libfftw3.3.dylib +0 -0
lal/.dylibs/libfftw3f.3.dylib +0 -0
lal/.dylibs/libframel.8.48.4.dylib +0 -0
lal/.dylibs/libgsl.28.dylib +0 -0
lal/.dylibs/libgslcblas.0.dylib +0 -0
lal/.dylibs/libhdf5.310.dylib +0 -0
lal/.dylibs/libhdf5_hl.310.dylib +0 -0
lal/.dylibs/libiconv.2.dylib +0 -0
lal/.dylibs/libidn2.0.dylib +0 -0
lal/.dylibs/libintl.8.dylib +0 -0
lal/.dylibs/liblal.20.dylib +0 -0
lal/.dylibs/liblalburst.8.dylib +0 -0
lal/.dylibs/liblalframe.14.dylib +0 -0
lal/.dylibs/liblalinference.23.dylib +0 -0
lal/.dylibs/liblalinspiral.18.dylib +0 -0
lal/.dylibs/liblalmetaio.11.dylib +0 -0
lal/.dylibs/liblalpulsar.30.dylib +0 -0
lal/.dylibs/liblalsimulation.37.dylib +0 -0
lal/.dylibs/liblalsupport.14.dylib +0 -0
lal/.dylibs/libmetaio.1.dylib +0 -0
lal/.dylibs/libnghttp2.14.dylib +0 -0
lal/.dylibs/libpsl.5.dylib +0 -0
lal/.dylibs/libssl.3.dylib +0 -0
lal/.dylibs/libsz.2.dylib +0 -0
lal/.dylibs/libunistring.5.dylib +0 -0
lal/.dylibs/libz.1.3.1.dylib +0 -0
lal/.dylibs/libzstd.1.5.7.dylib +0 -0
lal/__init__.py +145 -0
lal/_lal.cpython-312-darwin.so +0 -0
lal/_lal_swig.py +12 -0
lal/antenna.py +1200 -0
lal/git_version.py +64 -0
lal/gpstime.py +233 -0
lal/iterutils.py +408 -0
lal/pipeline.py +3139 -0
lal/rate.py +2455 -0
lal/series.py +244 -0
lal/utils/__init__.py +29 -0
lal/utils/cache.py +379 -0
lal/utils/series.py +277 -0
lalapps/__init__.py +26 -0
lalapps/bin/lal_cache +0 -0
lalapps/bin/lal_fftw_wisdom +0 -0
lalapps/bin/lal_fftwf_wisdom +0 -0
lalapps/bin/lal_simd_detect +0 -0
lalapps/bin/lal_tconvert +0 -0
lalapps/bin/lal_version +0 -0
lalapps/bin/lalapps_ComputeAntennaPattern +16 -0
lalapps/bin/lalapps_ComputeFstatBenchmark +16 -0
lalapps/bin/lalapps_ComputeFstatLatticeCount +16 -0
lalapps/bin/lalapps_ComputeFstatMCUpperLimit +16 -0
lalapps/bin/lalapps_ComputeFstatistic_v2 +16 -0
lalapps/bin/lalapps_ComputePSD +16 -0
lalapps/bin/lalapps_CopySFTs +16 -0
lalapps/bin/lalapps_DistanceVsMass +0 -0
lalapps/bin/lalapps_DriveHoughMulti +16 -0
lalapps/bin/lalapps_FstatMetric_v2 +16 -0
lalapps/bin/lalapps_HierarchSearchGCT +16 -0
lalapps/bin/lalapps_HierarchicalSearch +16 -0
lalapps/bin/lalapps_MakeSFTDAG +16 -0
lalapps/bin/lalapps_MakeSFTs +16 -0
lalapps/bin/lalapps_Makefakedata_v4 +16 -0
lalapps/bin/lalapps_Makefakedata_v5 +16 -0
lalapps/bin/lalapps_PredictFstat +16 -0
lalapps/bin/lalapps_PrintDetectorState +16 -0
lalapps/bin/lalapps_SFTclean +16 -0
lalapps/bin/lalapps_SFTvalidate +16 -0
lalapps/bin/lalapps_StringAddFrame +0 -0
lalapps/bin/lalapps_StringSearch +0 -0
lalapps/bin/lalapps_Weave +16 -0
lalapps/bin/lalapps_WeaveCompare +16 -0
lalapps/bin/lalapps_WeaveConcat +16 -0
lalapps/bin/lalapps_WeaveSetup +16 -0
lalapps/bin/lalapps_WriteSFTsfromSFDBs +16 -0
lalapps/bin/lalapps_animate +0 -0
lalapps/bin/lalapps_binj +0 -0
lalapps/bin/lalapps_blindinj +0 -0
lalapps/bin/lalapps_cache +16 -0
lalapps/bin/lalapps_calfacs +0 -0
lalapps/bin/lalapps_cbc_stochasticbank +0 -0
lalapps/bin/lalapps_chirplen +0 -0
lalapps/bin/lalapps_coh_PTF_inspiral +0 -0
lalapps/bin/lalapps_coinj +0 -0
lalapps/bin/lalapps_combine_crosscorr_toplists +16 -0
lalapps/bin/lalapps_compareFstats +16 -0
lalapps/bin/lalapps_compareSFTs +16 -0
lalapps/bin/lalapps_create_time_correction_ephemeris +16 -0
lalapps/bin/lalapps_dumpSFT +16 -0
lalapps/bin/lalapps_effdist +0 -0
lalapps/bin/lalapps_exc_resp +0 -0
lalapps/bin/lalapps_fftw_wisdom +16 -0
lalapps/bin/lalapps_fftwf_wisdom +16 -0
lalapps/bin/lalapps_fits_header_getval +16 -0
lalapps/bin/lalapps_fits_header_list +16 -0
lalapps/bin/lalapps_fits_overview +16 -0
lalapps/bin/lalapps_fits_table_list +16 -0
lalapps/bin/lalapps_fr_ninja +0 -0
lalapps/bin/lalapps_frextr +0 -0
lalapps/bin/lalapps_frinfo +0 -0
lalapps/bin/lalapps_frjoin +0 -0
lalapps/bin/lalapps_frread +0 -0
lalapps/bin/lalapps_frview +0 -0
lalapps/bin/lalapps_gwf2xml +0 -0
lalapps/bin/lalapps_heterodyne_pulsar +16 -0
lalapps/bin/lalapps_inspawgfile +0 -0
lalapps/bin/lalapps_inspfrinj +0 -0
lalapps/bin/lalapps_inspinj +0 -0
lalapps/bin/lalapps_inspiralDistance +0 -0
lalapps/bin/lalapps_knope +16 -0
lalapps/bin/lalapps_knope_automation_script +16 -0
lalapps/bin/lalapps_knope_collate_results +16 -0
lalapps/bin/lalapps_knope_result_page +16 -0
lalapps/bin/lalapps_makeblindinj +85 -0
lalapps/bin/lalapps_makeblindinj_himass +67 -0
lalapps/bin/lalapps_ninja +0 -0
lalapps/bin/lalapps_path2cache +16 -0
lalapps/bin/lalapps_power +0 -0
lalapps/bin/lalapps_pulsar_crosscorr_v2 +16 -0
lalapps/bin/lalapps_pulsar_frequency_evolution +16 -0
lalapps/bin/lalapps_pulsar_parameter_estimation_nested +16 -0
lalapps/bin/lalapps_random_bank +0 -0
lalapps/bin/lalapps_randombank +0 -0
lalapps/bin/lalapps_run_pulsar_crosscorr_v2 +16 -0
lalapps/bin/lalapps_searchsum2cache +16 -0
lalapps/bin/lalapps_spec_avg +16 -0
lalapps/bin/lalapps_spec_avg_long +16 -0
lalapps/bin/lalapps_spec_coherence +16 -0
lalapps/bin/lalapps_spininj +0 -0
lalapps/bin/lalapps_splitSFTs +16 -0
lalapps/bin/lalapps_splitbank +0 -0
lalapps/bin/lalapps_ssbtodetector +16 -0
lalapps/bin/lalapps_synthesizeBstatMC +16 -0
lalapps/bin/lalapps_synthesizeLVStats +16 -0
lalapps/bin/lalapps_synthesizeTransientStats +16 -0
lalapps/bin/lalapps_tconvert +16 -0
lalapps/bin/lalapps_tmpltbank +0 -0
lalapps/bin/lalapps_version +0 -0
lalapps/bin/lalapps_xtefitstoframe +0 -0
lalapps/bin/lalburst_version +0 -0
lalapps/bin/lalfr-cat +0 -0
lalapps/bin/lalfr-cksum +0 -0
lalapps/bin/lalfr-cut +0 -0
lalapps/bin/lalfr-dump +0 -0
lalapps/bin/lalfr-fmt +0 -0
lalapps/bin/lalfr-paste +0 -0
lalapps/bin/lalfr-print +0 -0
lalapps/bin/lalfr-split +0 -0
lalapps/bin/lalfr-stat +0 -0
lalapps/bin/lalfr-stream +0 -0
lalapps/bin/lalfr-vis +0 -0
lalapps/bin/lalframe_version +0 -0
lalapps/bin/lalinference_bench +0 -0
lalapps/bin/lalinference_burst +0 -0
lalapps/bin/lalinference_datadump +0 -0
lalapps/bin/lalinference_injectedlike +0 -0
lalapps/bin/lalinference_mpi_wrapper +59 -0
lalapps/bin/lalinference_nest +0 -0
lalapps/bin/lalinference_version +0 -0
lalapps/bin/lalinspiral_version +0 -0
lalapps/bin/lalmetaio_version +0 -0
lalapps/bin/lalpulsar_ComputeAntennaPattern +0 -0
lalapps/bin/lalpulsar_ComputeFstatBenchmark +0 -0
lalapps/bin/lalpulsar_ComputeFstatLatticeCount +0 -0
lalapps/bin/lalpulsar_ComputeFstatMCUpperLimit +0 -0
lalapps/bin/lalpulsar_ComputeFstatistic_v2 +0 -0
lalapps/bin/lalpulsar_ComputePSD +0 -0
lalapps/bin/lalpulsar_DriveHoughMulti +0 -0
lalapps/bin/lalpulsar_FstatMetric_v2 +0 -0
lalapps/bin/lalpulsar_HierarchSearchGCT +0 -0
lalapps/bin/lalpulsar_HierarchicalSearch +0 -0
lalapps/bin/lalpulsar_MakeSFTs +0 -0
lalapps/bin/lalpulsar_Makefakedata_v4 +0 -0
lalapps/bin/lalpulsar_Makefakedata_v5 +0 -0
lalapps/bin/lalpulsar_PredictFstat +0 -0
lalapps/bin/lalpulsar_PrintDetectorState +0 -0
lalapps/bin/lalpulsar_SFTclean +0 -0
lalapps/bin/lalpulsar_SFTvalidate +0 -0
lalapps/bin/lalpulsar_Weave +0 -0
lalapps/bin/lalpulsar_WeaveCompare +0 -0
lalapps/bin/lalpulsar_WeaveConcat +0 -0
lalapps/bin/lalpulsar_WeaveSetup +0 -0
lalapps/bin/lalpulsar_WriteSFTsfromSFDBs +0 -0
lalapps/bin/lalpulsar_compareFstats +0 -0
lalapps/bin/lalpulsar_compareSFTs +0 -0
lalapps/bin/lalpulsar_create_time_correction_ephemeris +0 -0
lalapps/bin/lalpulsar_crosscorr_v2 +0 -0
lalapps/bin/lalpulsar_dumpSFT +0 -0
lalapps/bin/lalpulsar_fits_header_getval +0 -0
lalapps/bin/lalpulsar_fits_header_list +0 -0
lalapps/bin/lalpulsar_fits_overview +0 -0
lalapps/bin/lalpulsar_fits_table_list +0 -0
lalapps/bin/lalpulsar_frequency_evolution +0 -0
lalapps/bin/lalpulsar_heterodyne +0 -0
lalapps/bin/lalpulsar_parameter_estimation_nested +0 -0
lalapps/bin/lalpulsar_spec_avg +0 -0
lalapps/bin/lalpulsar_spec_avg_long +0 -0
lalapps/bin/lalpulsar_spec_coherence +0 -0
lalapps/bin/lalpulsar_splitSFTs +0 -0
lalapps/bin/lalpulsar_ssbtodetector +0 -0
lalapps/bin/lalpulsar_synthesizeBstatMC +0 -0
lalapps/bin/lalpulsar_synthesizeLVStats +0 -0
lalapps/bin/lalpulsar_synthesizeTransientStats +0 -0
lalapps/bin/lalpulsar_version +0 -0
lalapps/bin/lalsim-bh-qnmode +0 -0
lalapps/bin/lalsim-bh-ringdown +0 -0
lalapps/bin/lalsim-bh-sphwf +0 -0
lalapps/bin/lalsim-burst +0 -0
lalapps/bin/lalsim-detector-noise +0 -0
lalapps/bin/lalsim-detector-strain +0 -0
lalapps/bin/lalsim-inject +0 -0
lalapps/bin/lalsim-inspiral +0 -0
lalapps/bin/lalsim-ns-eos-table +0 -0
lalapps/bin/lalsim-ns-mass-radius +0 -0
lalapps/bin/lalsim-ns-params +0 -0
lalapps/bin/lalsim-sgwb +0 -0
lalapps/bin/lalsim-unicorn +0 -0
lalapps/bin/lalsimulation_version +0 -0
lalapps/cosmicstring.py +691 -0
lalapps/data/BNSMasses.dat +65022 -0
lalapps/data/CorrelationMatrix.csv +15 -0
lalapps/data/LALSimNeutronStarEOS_ABHT_QMC_RMF1_META.dat +1882 -0
lalapps/data/LALSimNeutronStarEOS_ABHT_QMC_RMF2_META.dat +1939 -0
lalapps/data/LALSimNeutronStarEOS_ABHT_QMC_RMF3_META.dat +1784 -0
lalapps/data/LALSimNeutronStarEOS_ABHT_QMC_RMF4_META.dat +2074 -0
lalapps/data/LALSimNeutronStarEOS_ALF1.dat +435 -0
lalapps/data/LALSimNeutronStarEOS_ALF2.dat +453 -0
lalapps/data/LALSimNeutronStarEOS_ALF3.dat +441 -0
lalapps/data/LALSimNeutronStarEOS_ALF4.dat +441 -0
lalapps/data/LALSimNeutronStarEOS_AP1.dat +212 -0
lalapps/data/LALSimNeutronStarEOS_AP2.dat +212 -0
lalapps/data/LALSimNeutronStarEOS_AP3.dat +212 -0
lalapps/data/LALSimNeutronStarEOS_AP4.dat +210 -0
lalapps/data/LALSimNeutronStarEOS_APR.dat +500 -0
lalapps/data/LALSimNeutronStarEOS_APR4_EPP.dat +1447 -0
lalapps/data/LALSimNeutronStarEOS_BBB2.dat +84 -0
lalapps/data/LALSimNeutronStarEOS_BGN1H1.dat +123 -0
lalapps/data/LALSimNeutronStarEOS_BHF_BBB2.dat +499 -0
lalapps/data/LALSimNeutronStarEOS_BL_CHIRAL_META.dat +1534 -0
lalapps/data/LALSimNeutronStarEOS_BPAL12.dat +61 -0
lalapps/data/LALSimNeutronStarEOS_BSK19.dat +310 -0
lalapps/data/LALSimNeutronStarEOS_BSK20.dat +310 -0
lalapps/data/LALSimNeutronStarEOS_BSK21.dat +310 -0
lalapps/data/LALSimNeutronStarEOS_ENG.dat +108 -0
lalapps/data/LALSimNeutronStarEOS_FPS.dat +129 -0
lalapps/data/LALSimNeutronStarEOS_GMSR_BSK14_BSK24.dat +1010 -0
lalapps/data/LALSimNeutronStarEOS_GMSR_DHSL59_BSK24.dat +1009 -0
lalapps/data/LALSimNeutronStarEOS_GMSR_DHSL69_BSK24.dat +1009 -0
lalapps/data/LALSimNeutronStarEOS_GMSR_F0_BSK24.dat +1010 -0
lalapps/data/LALSimNeutronStarEOS_GMSR_H1_BSK24.dat +1009 -0
lalapps/data/LALSimNeutronStarEOS_GMSR_H2_BSK24.dat +1010 -0
lalapps/data/LALSimNeutronStarEOS_GMSR_H3_BSK24.dat +1010 -0
lalapps/data/LALSimNeutronStarEOS_GMSR_H4_BSK24.dat +1010 -0
lalapps/data/LALSimNeutronStarEOS_GMSR_H5_BSK24.dat +1009 -0
lalapps/data/LALSimNeutronStarEOS_GMSR_LN55_BSK24.dat +1010 -0
lalapps/data/LALSimNeutronStarEOS_GMSR_SLY5_BSK24.dat +1010 -0
lalapps/data/LALSimNeutronStarEOS_GNH3.dat +71 -0
lalapps/data/LALSimNeutronStarEOS_GPPVA_DD2_BSK24.dat +1009 -0
lalapps/data/LALSimNeutronStarEOS_GPPVA_DDME2_BSK24.dat +1010 -0
lalapps/data/LALSimNeutronStarEOS_GPPVA_FSU2H_BSK24.dat +1009 -0
lalapps/data/LALSimNeutronStarEOS_GPPVA_FSU2_BSK24.dat +1010 -0
lalapps/data/LALSimNeutronStarEOS_GPPVA_NL3WRL55_BSK24.dat +1010 -0
lalapps/data/LALSimNeutronStarEOS_GS1.dat +136 -0
lalapps/data/LALSimNeutronStarEOS_GS2.dat +100 -0
lalapps/data/LALSimNeutronStarEOS_H1.dat +114 -0
lalapps/data/LALSimNeutronStarEOS_H2.dat +114 -0
lalapps/data/LALSimNeutronStarEOS_H3.dat +98 -0
lalapps/data/LALSimNeutronStarEOS_H4.dat +664 -0
lalapps/data/LALSimNeutronStarEOS_H5.dat +703 -0
lalapps/data/LALSimNeutronStarEOS_H6.dat +509 -0
lalapps/data/LALSimNeutronStarEOS_H7.dat +703 -0
lalapps/data/LALSimNeutronStarEOS_HQC18.dat +388 -0
lalapps/data/LALSimNeutronStarEOS_KDE0V.dat +500 -0
lalapps/data/LALSimNeutronStarEOS_KDE0V1.dat +500 -0
lalapps/data/LALSimNeutronStarEOS_KDE0V1_BSK24.dat +1388 -0
lalapps/data/LALSimNeutronStarEOS_KDE0V_BSK24.dat +1398 -0
lalapps/data/LALSimNeutronStarEOS_MPA1.dat +102 -0
lalapps/data/LALSimNeutronStarEOS_MS1.dat +122 -0
lalapps/data/LALSimNeutronStarEOS_MS1B.dat +126 -0
lalapps/data/LALSimNeutronStarEOS_MS1B_PP.dat +1447 -0
lalapps/data/LALSimNeutronStarEOS_MS1_PP.dat +1447 -0
lalapps/data/LALSimNeutronStarEOS_MS2.dat +48 -0
lalapps/data/LALSimNeutronStarEOS_PAL6.dat +148 -0
lalapps/data/LALSimNeutronStarEOS_PCL2.dat +134 -0
lalapps/data/LALSimNeutronStarEOS_PCP_BSK24_BSK24.dat +1010 -0
lalapps/data/LALSimNeutronStarEOS_PS.dat +165 -0
lalapps/data/LALSimNeutronStarEOS_QMC700.dat +117 -0
lalapps/data/LALSimNeutronStarEOS_RG_SLY4_BSK24.dat +1010 -0
lalapps/data/LALSimNeutronStarEOS_RS.dat +500 -0
lalapps/data/LALSimNeutronStarEOS_RS_BSK24.dat +1356 -0
lalapps/data/LALSimNeutronStarEOS_SK255.dat +500 -0
lalapps/data/LALSimNeutronStarEOS_SK255_BSK24.dat +1066 -0
lalapps/data/LALSimNeutronStarEOS_SK272.dat +500 -0
lalapps/data/LALSimNeutronStarEOS_SKA.dat +500 -0
lalapps/data/LALSimNeutronStarEOS_SKA_BSK24.dat +1433 -0
lalapps/data/LALSimNeutronStarEOS_SKB.dat +500 -0
lalapps/data/LALSimNeutronStarEOS_SKB_BSK24.dat +1373 -0
lalapps/data/LALSimNeutronStarEOS_SKI2.dat +500 -0
lalapps/data/LALSimNeutronStarEOS_SKI2_BSK24.dat +1348 -0
lalapps/data/LALSimNeutronStarEOS_SKI3.dat +500 -0
lalapps/data/LALSimNeutronStarEOS_SKI3_BSK24.dat +1355 -0
lalapps/data/LALSimNeutronStarEOS_SKI4.dat +497 -0
lalapps/data/LALSimNeutronStarEOS_SKI4_BSK24.dat +1348 -0
lalapps/data/LALSimNeutronStarEOS_SKI5.dat +500 -0
lalapps/data/LALSimNeutronStarEOS_SKI6.dat +500 -0
lalapps/data/LALSimNeutronStarEOS_SKI6_BSK24.dat +1358 -0
lalapps/data/LALSimNeutronStarEOS_SKMP.dat +498 -0
lalapps/data/LALSimNeutronStarEOS_SKOP.dat +500 -0
lalapps/data/LALSimNeutronStarEOS_SKOP_BSK24.dat +1373 -0
lalapps/data/LALSimNeutronStarEOS_SLY.dat +99 -0
lalapps/data/LALSimNeutronStarEOS_SLY2.dat +500 -0
lalapps/data/LALSimNeutronStarEOS_SLY230A.dat +500 -0
lalapps/data/LALSimNeutronStarEOS_SLY230A_BSK24.dat +1116 -0
lalapps/data/LALSimNeutronStarEOS_SLY2_BSK24.dat +1106 -0
lalapps/data/LALSimNeutronStarEOS_SLY4.dat +100 -0
lalapps/data/LALSimNeutronStarEOS_SLY9.dat +498 -0
lalapps/data/LALSimNeutronStarEOS_SLY9_BSK24.dat +1083 -0
lalapps/data/LALSimNeutronStarEOS_SQM1.dat +176 -0
lalapps/data/LALSimNeutronStarEOS_SQM2.dat +180 -0
lalapps/data/LALSimNeutronStarEOS_SQM3.dat +176 -0
lalapps/data/LALSimNeutronStarEOS_WFF1.dat +109 -0
lalapps/data/LALSimNeutronStarEOS_WFF2.dat +109 -0
lalapps/data/LALSimNeutronStarEOS_WFF3.dat +107 -0
lalapps/data/LALSimNeutronStarEOS_XMLSLZ_DDLZ1_BSK24.dat +1227 -0
lalapps/data/LALSimNeutronStarEOS_XMLSLZ_DDME2_BSK24.dat +1272 -0
lalapps/data/LALSimNeutronStarEOS_XMLSLZ_DDMEX_BSK24.dat +1280 -0
lalapps/data/LALSimNeutronStarEOS_XMLSLZ_GM1_BSK24.dat +1288 -0
lalapps/data/LALSimNeutronStarEOS_XMLSLZ_MTVTC_BSK24.dat +1288 -0
lalapps/data/LALSimNeutronStarEOS_XMLSLZ_NL3_BSK24.dat +1230 -0
lalapps/data/LALSimNeutronStarEOS_XMLSLZ_PKDD_BSK24.dat +1288 -0
lalapps/data/LALSimNeutronStarEOS_XMLSLZ_TM1_BSK24.dat +1288 -0
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lalsuite-7.26.2.dev20251210.data/scripts/lalpulsar_knope_collate_results ADDED Viewed

@@ -0,0 +1,675 @@
+#!python
+# -*- coding: utf-8 -*-
+#
+#       lalpulsar_knope_collate_results.py
+#
+#       Copyright 2013, 2016
+#       Matthew Pitkin <matthew.pitkin@ligo.org>,
+#
+#       This program is free software; you can redistribute it and/or modify
+#       it under the terms of the GNU General Public License as published by
+#       the Free Software Foundation; either version 2 of the License, or
+#       (at your option) any later version.
+#
+#       This program is distributed in the hope that it will be useful,
+#       but WITHOUT ANY WARRANTY; without even the implied warranty of
+#       MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+#       GNU General Public License for more details.
+#
+#       You should have received a copy of the GNU General Public License
+#       along with this program; if not, write to the Free Software
+#       Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston,
+#       MA 02110-1301, USA.
+## \file
+## \ingroup lalpulsar_bin_HeterodyneSearch
+"""
+The KNOwn Pulsar pipelinE - lalpulsar_knope_collate_results
+"""
+from __future__ import print_function, division
+# standard library imports
+import argparse
+import ast
+import json
+import datetime
+import os
+import re
+import sys
+from configparser import ConfigParser
+# related third party imports
+import numpy as np
+import matplotlib
+matplotlib.use("Agg")
+# local application/library specific imports
+from lalpulsar import git_version
+from lalpulsar.pulsarpputils import *
+from lalpulsar.pulsarhtmlutils import *
+__author__ = "Matthew Pitkin <matthew.pitkin@ligo.org>"
+__version__ = "git id {}".format(git_version.id)
+__date__ = git_version.date
+# create format for the output page
+htmlpage = """
+<!DOCTYPE html>
+<html lang="en">
+<head>
+  <meta http-equiv="Content-Type" content="text/html; charset=utf-8"/>
+  <meta name="description" content="Known pulsar search results"/>
+  <meta charset="UTF-8">
+  <title>Known pulsar search results</title>
+  <link rel="stylesheet" type="text/css" href="{cssfile}"/>
+</head>
+<body>
+<h1>Results table {nsources}</h1>
+<!-- The table of pulsars and results -->
+<div class="tablediv">
+{resultstable}
+</div>
+<br />
+<!-- Footnotes from the table -->
+{footnotes}
+<br />
+<!-- a footer -->
+<div id="footer">
+{footer}
+</div>
+</body>
+</html>
+"""
+# main function
+if __name__ == "__main__":
+    description = """This script will collate results pages from multiple pulsars into a signal table."""
+    epilog = """An example configuration file could contain the following:
+# a section containing output information
+[output]
+path = path_to_output_directory  # the path to the output directory to contain the page [required]
+# a section containing input directory information
+[input]
+path = path_to_input_directory   # the path to the directory in which the individual results page directories live [required]
+# a section containing general information for the output table
+[general]
+detectors = ['H1', 'L1', 'Joint']   # a list of detctors (including 'Joint') whose results will be output
+sort_value = name                   # the pulsar parameter on which to sort the results (default: 'name') [Allowed: 'name', 'freq', 'ra', 'dec', 'sdlim', 'hul', 'ell', 'sdrat', 'dist']
+sort_direction = ascending          # sort in ascending or decending order (default: 'ascending')
+results = ['h0ul', 'ell']            # a list of result parameters to output (default: ['h0ul'] - the h0 upper limit) [Allowed: 'h0ul', 'ell', 'sdrat', 'q22', 'bsn', 'bci', 'bcin', 'C21ul', 'C22ul']
+parameters = ['f0rot', 'ra', 'dec'] # a list of pulsar parameters to output (default: ['f0rot'] - the pulsar's rotation frequency) [Allowed: 'f0rot', 'f0gw', 'f1rot', 'f1gw', 'sdlim', 'ra', 'dec', 'dist']
+"""
+    parser = argparse.ArgumentParser(
+        description=description,
+        epilog=epilog,
+        formatter_class=argparse.RawDescriptionHelpFormatter,
+    )
+    parser.add_argument("inifile", help="The configuration (.ini) file")
+    # parse input options
+    opts = parser.parse_args()
+    inifile = opts.inifile
+    cp = ConfigParser()
+    try:
+        cp.read(inifile)
+    except:
+        print(
+            "Error... cannot parse configuration file '%s'" % inifile, file=sys.stderr
+        )
+        sys.exit(-1)
+    # get the output path
+    try:
+        outpath = cp.get("output", "path")
+    except:
+        print(
+            "Error... no output directory 'path' specified in [output] section.",
+            file=sys.stderr,
+        )
+        sys.exit(1)
+    # try making directory
+    if not os.access(outpath, os.W_OK) and not os.path.isdir(
+        outpath
+    ):  # check if directory already exists
+        try:
+            os.makedirs(outpath)
+        except:
+            print(
+                "Error... cannot make output directory '%s'." % outpath, file=sys.stderr
+            )
+            sys.exit(1)
+    # get the directory containing all the individual pulsar result directories
+    try:
+        inpath = cp.get("input", "path")
+    except:
+        print(
+            "Error... no input directory 'path' specified in [input] section.",
+            file=sys.stderr,
+        )
+        sys.exit(1)
+    if not os.path.isdir(inpath):
+        print("Error... input path '%s' does not exist." % inpath, file=sys.stderr)
+        sys.exit(1)
+    # check how to sort the results (e.g. by name)
+    try:
+        sorttype = cp.get("general", "sort_value")
+    except:
+        sorttype = "name"  # default to sort by pulsar name
+    # sorting can be by name (equivalently right ascension), frequency, declination, spin-down limit, h0 upper limit, ellipticity upper limit, spin-down ratio or distance
+    if sorttype not in [
+        "name",
+        "freq",
+        "ra",
+        "dec",
+        "sdlim",
+        "h0ul",
+        "ell",
+        "sdrat",
+        "dist",
+    ]:
+        print(
+            "Error... sorting can only be on either 'name', 'freq', 'ra', 'dec', 'sdlim', 'hul', 'ell', 'sdrat' or 'dist'.",
+            file=sys.stderr,
+        )
+        sys.exit(1)
+    # get the direction of the sorting ('ascending' or 'descending')
+    try:
+        sortdirection = cp.get("general", "sort_direction")
+        if sortdirection == "ascending":
+            reverse = False
+        elif sortdirection == "descending":
+            reverse = True
+        else:  # default to ascending
+            reverse = False
+    except:
+        reverse = False  # default to ascending
+    # get list of detectors (and/or 'Joint') to use in the output table
+    try:
+        ifos = ast.literal_eval(cp.get("general", "detectors"))
+    except:
+        print("Error... could not parse list of detectors to include.", file=sys.stderr)
+        sys.exit(1)
+    # get list of value to output (e.g. ['h0ul', 'ell'] for the h0 upper limit and ellipticity limit
+    try:
+        outputlims = [
+            ol.upper() for ol in ast.literal_eval(cp.get("general", "results"))
+        ]  # covert to upper case
+    except:  # as default output the h0 upper limit
+        outputlims = ["H0UL"]
+    # get a list of the pulsar parameters to output
+    try:
+        outputvals = [
+            ov.upper() for ov in ast.literal_eval(cp.get("general", "parameters"))
+        ]  # convert to upper case
+    except:  # as default output the rotational frequency
+        outputvals = ["F0ROT"]
+    # dictionary for output html and LaTeX pages
+    htmlinput = {}
+    latexinput = {}
+    # get directories containing results pages
+    resdirs = os.listdir(inpath)
+    if len(resdirs) == 0:
+        print(
+            "Error... the input directory '%s' contains no other directories." % inpath,
+            file=sys.stderr,
+        )
+        sys.exit(1)
+    resultsdata = {}  # dictionary to hold results data
+    sourcedirs = [
+        os.path.join(inpath, rd)
+        for rd in resdirs
+        if os.path.isfile(os.path.join(inpath, rd, "{}.ini".format(rd)))
+    ]
+    totalsources = len(sourcedirs)
+    cursources = 0  # currently number of completed sources
+    for d in sourcedirs:
+        ld = os.listdir(d)
+        jsonfile = None
+        for fd in ld:
+            if ".json" == os.path.splitext(fd)[-1]:
+                jsonfile = os.path.join(d, fd)
+                break
+        if jsonfile == None:  # no file found, so move on to next directory
+            continue
+        # read in json file
+        try:
+            fp = open(jsonfile, "r")
+            pdata = json.load(fp)
+            fp.close()
+        except:
+            print(
+                "Warning... could not read JSON file '%s'. Skipping this directory."
+                % jsonfile
+            )
+            continue
+        # check dictionary contains a 'Pulsar data' key
+        if "Pulsar data" not in pdata:
+            print(
+                "Warning... no 'Pulsar data' field in JSON file '%s'. Skipping this directory."
+                % jsonfile
+            )
+            continue
+        # check dictionary contains 'PSR' key
+        if "PSR" not in pdata:
+            print(
+                "Warning... no 'PSR' pulsar name field in JSON file '%s'. Skipping this directory."
+                % jsonfile
+            )
+            continue
+        # check that the request detectors are within the dictionary
+        ifopresent = True
+        for ifo in ifos:
+            if ifo not in pdata:
+                print(
+                    "Warning... no key for detector '%s' in JSON file '%s'. Skipping this directory."
+                    % (ifo, jsonfile)
+                )
+                ifopresent = False
+                break
+        if not ifopresent:
+            continue
+        # add data into dictionary
+        resultsdata[pdata["PSR"]] = pdata
+        resultsdata[pdata["PSR"]]["path"] = os.path.relpath(
+            d, outpath
+        )  # relative path to result directory
+        cursources += 1
+    if len(resultsdata) == 0:
+        print("Error... no reults were found!", file=sys.stderr)
+        sys.exit(1)
+    # perform sorting
+    if "freq" == sorttype:  # sort by frequency
+        sortlist = [
+            (resultsdata[pname]["Pulsar data"]["F0"], pname) for pname in resultsdata
+        ]
+    elif "dec" == sorttype:  # sort by declination
+        sortlist = [
+            (resultsdata[pname]["Pulsar data"]["DEC"], pname) for pname in resultsdata
+        ]
+    elif "dist" == sorttype:  # sort by distance
+        sortlist = [
+            (resultsdata[pname]["Pulsar data"]["DIST"], pname) for pname in resultsdata
+        ]
+    elif "sdlim" == sorttype:  # sort by spin-down limit
+        sortlist = [
+            (resultsdata[pname]["Pulsar data"]["spin-down limit"], pname)
+            for pname in resultsdata
+        ]
+    elif (
+        "h0ul" == sorttype
+    ):  # sort on h0 upper limit (get minimum h0 upper limit from all requested IFOs)
+        sortlist = [
+            (
+                min([resultsdata[pname][ifo]["Upper limits"]["H0"] for ifo in ifos]),
+                pname,
+            )
+            for pname in resultsdata
+        ]
+    elif (
+        "ell" == sorttype
+    ):  # sort on ellipticity upper limit (get minimum upper limit from all requested IFOs)
+        sortlist = [
+            (
+                min([resultsdata[pname][ifo]["Upper limits"]["ELL"] for ifo in ifos]),
+                pname,
+            )
+            for pname in resultsdata
+        ]
+    elif (
+        "sdrat" == sorttype
+    ):  # sort on ratio of result to spin-down limit (get minimum upper limit from all requested IFOs)
+        sortlist = [
+            (
+                min(
+                    [
+                        resultsdata[pname][ifo]["Upper limits"]["spin-down ratio"]
+                        for ifo in ifos
+                    ]
+                ),
+                pname,
+            )
+            for pname in resultsdata
+        ]
+    else:  # sort by name (equivalent to sorting by RA) by default
+        sortlist = [(pname, pname) for pname in resultsdata]
+    sortedlist = [
+        p[1] for p in sorted(sortlist, reverse=reverse)
+    ]  # return a list of sorted names
+    nifos = len(ifos)  # number of IFOs (including "Joint")
+    numprepars = 1 + len(outputvals)  # number of parameters in start of table
+    numlims = len(outputlims)  # number of limit parameter to output
+    # check if outputing coherent vs incoherent Bayes factors (Bci or Bcin) - these will only be used for if 'Joint' is present in the detectors
+    showbci = showbcin = 0
+    if "BCI" in outputlims:
+        if "Joint" in ifos:
+            showbci = 1
+        outputlims.pop(outputlims.index("BCI"))
+        numlims -= 1
+    if "BCIN" in outputlims:
+        if "Joint" in ifos:
+            showbcin = 1
+        outputlims.pop(outputlims.index("BCIN"))
+        numlims -= 1
+    # start creating the results table
+    restable = htmltable()
+    ltable = latextable(ncolumns=(numprepars + numlims * nifos + showbci + showbcin))
+    ltable.set_caption("Limits on the gravitational wave amplitude for known pulsars")
+    # first row
+    restable.addrow()
+    ltable.addrow(underline=True)
+    restable.adddata("", dataclass="bottomborder", header=True, colspan=numprepars)
+    ltable.adddata("~", multicolumn=numprepars)
+    for ifo in ifos:
+        ncolspan = numlims
+        if ifo == "Joint":
+            ncolspan += showbci + showbcin
+        restable.adddata(
+            ifo,
+            dataclass=ifo,
+            header=True,
+            datastyle="text-align:center; border-left:1px solid #000; border-bottom:1px solid #000",
+            colspan=ncolspan,
+        )
+        ltable.adddata(ifo, multicolumn=ncolspan)
+    # second row
+    restable.addrow()
+    ltable.addrow(underline=True)
+    restable.adddata("Pulsar", dataclass="bottomborder", header=True)
+    ltable.adddata("Pulsar")
+    for prepar in outputvals:
+        restable.adddata(paramhtmldict[prepar], dataclass="bottomborder", header=True)
+        ltable.adddata(paramlatexdict[prepar])
+    for ifo in ifos:
+        dataclass = "leftborder"  # class for first value
+        datastyle = "border-bottom:1px solid #000"  # style for first value
+        for ol in outputlims:
+            if ol[-2:] == "UL":  # if value is an upper limit add credible region
+                cr = list(resultsdata.values())[0][ifo]["Upper limits"][
+                    "credible region"
+                ]
+                restable.adddata(
+                    paramhtmldict[ol].format(cr),
+                    dataclass=dataclass,
+                    datastyle=datastyle,
+                    header=True,
+                )
+                ltable.adddata(paramlatexdict[ol].format(cr))
+            else:
+                restable.adddata(
+                    paramhtmldict[ol],
+                    dataclass=dataclass,
+                    datastyle=datastyle,
+                    header=True,
+                )
+                ltable.adddata(paramlatexdict[ol])
+            dataclass = "bottomborder"
+            datastyle = ""
+        if (
+            ifo == "Joint"
+        ):  # check whether to show additional coherent vs incoherent Bayes factor values
+            if showbci:
+                restable.adddata(
+                    paramhtmldict["BCI"],
+                    dataclass=dataclass,
+                    datastyle=datastyle,
+                    header=True,
+                )
+                ltable.adddata(paramlatexdict["BCI"])
+            if showbcin:
+                restable.adddata(
+                    paramhtmldict["BCIN"],
+                    dataclass=dataclass,
+                    datastyle=datastyle,
+                    header=True,
+                )
+                ltable.adddata(paramlatexdict["BCIN"])
+    # a dictionary to convert between parameter names
+    convdict = {
+        "RA": "RA",
+        "DEC": "DEC",
+        "H0UL": "H0",
+        "C21UL": "C21",
+        "C22UL": "C22",
+        "I21UL": "I21",
+        "I31UL": "I31",
+        "SDLIM": "spin-down limit",
+        "SDRAT": "spin-down ratio",
+        "BSN": "Signal vs Noise",
+        "BCI": "Coherent vs Incoherent",
+        "BCIN": "Coherent vs Incoherent or Noise",
+    }
+    # checks for whegther footnotes are required
+    dagger = False
+    ddagger = False
+    # loop through par files to produce plots
+    for pname in sortedlist:
+        restable.addrow()
+        ltable.addrow()
+        pulsar = resultsdata[pname]  # the dictionary of information for this pulsar
+        # output pulsar names and pulsar parameters (include link to results page)
+        restable.adddata(
+            atag(os.path.join(pulsar["path"], pname + ".html"), linktext=pname).text
+        )
+        ltable.adddata(
+            re.sub(r"\-", "\\\\textminus", pname)
+        )  # substitute - ('hyphen') for \textminus in names
+        for prepar in outputvals:
+            htmlsdtag = ""
+            latexsdtag = ""
+            # set footnotes for pulsar's that have had a "corrected" spin-down
+            if "SDLIM" in prepar:
+                if (
+                    pulsar["Pulsar data"]["P1_I"] != None
+                ):  # spin-down has been corrected for intrinsic motion effects
+                    if (
+                        pulsar["Pulsar data"]["P1_I"] > 0.0
+                    ):  # double check that intrinsic period derivative is positive
+                        htmlsdtag = htmltag("sup", tagtext="&dagger;").text
+                        latexsdtag = r"$\dagger$"
+                        dagger = True
+                elif pulsar["Pulsar data"]["ASSOC"] != None:
+                    if "GC" in pulsar["Pulsar data"]["ASSOC"]:
+                        htmlsdtag = htmltag("sup", tagtext="&Dagger;").text
+                        latexsdtag = r"$\ddagger$"
+                        ddagger = True
+            if prepar in convdict:
+                pn = convdict[prepar]
+            else:
+                pn = prepar
+            if pn in pulsar["Pulsar data"]:
+                preval = pulsar["Pulsar data"][pn]
+                if preval == None:
+                    prevalhtml = "*"
+                    prevallatex = "*"
+                else:
+                    disphtmlfunc = paramhtmldispfunc.__dict__[prepar]
+                    displatexfunc = paramlatexdispfunc.__dict__[prepar]
+                    prevalhtml = disphtmlfunc(preval)
+                    prevallatex = displatexfunc(preval)
+            else:
+                prevalhtml = "*"
+                prevallatex = "*"
+            restable.adddata(prevalhtml + htmlsdtag)
+            ltable.adddata(prevallatex + latexsdtag)
+        for ifo in ifos:
+            dataclass = "leftborder"
+            for limpar in outputlims:
+                if limpar in convdict:
+                    ln = convdict[limpar]
+                else:
+                    ln = limpar
+                section = "Upper limits"  # generally values will be in the 'Upper limits' section
+                if (
+                    limpar == "BSN"
+                ):  # if getting the Bayes factor look in 'Bayes factors' section
+                    section = "Bayes factors"
+                if ln in pulsar[ifo][section]:
+                    limval = pulsar[ifo][section][ln]
+                    if limval == None:
+                        limvalhtml = "*"
+                        limvallatex = "*"
+                    else:
+                        if limpar == "BSN":  # convert to log base 10
+                            limval = limval / np.log(10.0)
+                        disphtmlfunc = paramhtmldispfunc.__dict__[limpar]
+                        displatexfunc = paramlatexdispfunc.__dict__[limpar]
+                        limvalhtml = disphtmlfunc(limval)
+                        limvallatex = displatexfunc(limval)
+                else:
+                    limvalhtml = "*"
+                    limvallatex = "*"
+                restable.adddata(limvalhtml, dataclass=dataclass)
+                dataclass = ""
+                ltable.adddata(limvallatex)
+            # check if needing to output coherent vs incoherent Bayes factors
+            if ifo == "Joint":
+                for bu, show in [("BCI", showbci), ("BCIN", showbcin)]:
+                    if show:
+                        bn = convdict[bu]
+                        if bn in pulsar[ifo]["Bayes factors"]:
+                            bval = pulsar[ifo]["Bayes factors"][bn]
+                            if bval == None:
+                                bvalhtml = "*"
+                                bvallatex = "*"
+                            else:
+                                bval = bval / np.log(10.0)
+                                disphtmlfunc = paramhtmldispfunc.__dict__[bu]
+                                displatexfunc = paramlatexdispfunc.__dict__[bu]
+                                bvalhtml = disphtmlfunc(bval)
+                                bvallatex = displatexfunc(bval)
+                        else:
+                            bvalhtml = "*"
+                            bvallatex = "*"
+                        restable.adddata(bvalhtml, dataclass=dataclass)
+                        dataclass = ""
+                        ltable.adddata(bvallatex)
+    htmlinput["nsources"] = "(%d/%d sources)" % (cursources, totalsources)
+    htmlinput["resultstable"] = restable.tabletext
+    # add footnotes
+    if dagger or ddagger:
+        htmlfootnotes = htmltag("div", tagclass="footnotes")
+        if dagger:
+            htmlfootnotes += htmltag("sup", tagtext="&dagger;").text
+            htmlfootnotes += " The spin-down limit was calculated using a spin-down "
+            htmlfootnotes += atag(
+                "http://www.atnf.csiro.au/research/pulsar/psrcat/psrcat_help.html?type=normal&highlight=p1_i#p1_i",
+                linktext="corrected",
+            ).text
+            htmlfootnotes += " for proper motion effects.\n"
+            htmlfootnotes += "<br />\n"
+            ltable.set_postamble(
+                "$\\dagger$ The pulsar's spin-down is corrected for proper motion effects. \\\\\n"
+            )
+        if ddagger:
+            htmlfootnotes += htmltag("sup", tagtext="&ddagger;").text
+            htmlfootnotes += " The spin-down limit was calculated using a characteristic spin-down age of 10<sup>9</sup> years.\n"
+            ltable.set_postamble(
+                ltable.postamble
+                + "$\\ddagger$ The pulsar's spin-down is calculated using a characteristic spin-down age of $10^9$ years.\n"
+            )
+        htmlinput["footnotes"] = htmlfootnotes.text
+    else:
+        htmlinput["footnotes"] = ""
+    # create CSS
+    cssfile = os.path.join(outpath, "table.css")
+    fp = open(cssfile, "w")
+    fp.write(results_table_css)
+    fp.close()
+    htmlinput["cssfile"] = os.path.basename(cssfile)
+    # get time/date for file creation
+    now = datetime.datetime.now()
+    # add footer containing author, date and command lines used for page
+    htmlinput["footer"] = "{} - {}<br><br>Command lines used:<br>{}<br>{}<br>".format(
+        __author__, now.strftime("%a %d %b %Y"), " ".join(sys.argv), __version__
+    )
+    # create page
+    try:
+        htmlfile = os.path.join(outpath, "index.html")
+        fp = open(htmlfile, "w")
+        fp.write(htmlpage.format(**htmlinput))
+        fp.close()
+    except:
+        print("Error... there was a problem outputting the html page.", file=sys.stderr)
+        sys.exit(1)
+    # output the LaTeX table
+    try:
+        latexfile = os.path.join(outpath, "resultstable.tex")
+        fp = open(latexfile, "w")
+        fp.write(ltable.tabletext)
+        fp.close()
+    except:
+        print(
+            "Error... there was a problem outputting the LaTeX table.", file=sys.stderr
+        )
+        sys.exit(1)