lalsuite 7.22.1.dev20240408__cp312-cp312-manylinux_2_28_aarch64.whl → 7.26.2.dev20251202__cp312-cp312-manylinux_2_28_aarch64.whl

{lalsuite-7.22.1.dev20240408.data → lalsuite-7.26.2.dev20251202.data}/scripts/lalinference_burst_pp_pipe

@@ -1,5 +1,4 @@
 #!python
-##(in place of shebang, for consistent line numbers)
 # End-to-end LALInference test pipeline
 # (C) 2014 John Veitch
 
@@ -10,9 +9,9 @@ import sys
 import uuid
 from optparse import OptionParser
 
-from six.moves.configparser import ConfigParser
+from configparser import ConfigParser
 
-from glue import pipeline
+from lal import pipeline
 
 from lalinference import lalinference_pipe_utils as pipe_utils
 from lalinference.lalinference_pipe_utils import mkdirs
@@ -43,11 +42,17 @@ inifile=args[0]
 
 prior_cp=ConfigParser()
 prior_cp.optionxform = str
-prior_cp.readfp(open(inifile))
+try:
+  prior_cp.read_file(open(inifile))
+except AttributeError:
+  prior_cp.readfp(open(inifile))
 
 main_cp=ConfigParser()
 main_cp.optionxform = str
-main_cp.readfp(open(inifile))
+try:
+  main_cp.read_file(open(inifile))
+except AttributeError:
+  main_cp.readfp(open(inifile))
 
 
 rundir=os.path.abspath(opts.run_path)
@@ -213,5 +218,3 @@ maindag.write_script()
 # End of program
 print('Successfully created DAG file.')
 print('Now run condor_submit_dag %s\n'%(outerdag.get_dag_file()))
-
-

{lalsuite-7.22.1.dev20240408.data → lalsuite-7.26.2.dev20251202.data}/scripts/lalinference_coherence_test

@@ -1,5 +1,4 @@
 #!python
-##(in place of shebang, for consistent line numbers)
 '''
 This program simply computes the bayes factor between the coherent and incoherent models
 given as input the B files for the run.

{lalsuite-7.22.1.dev20240408.data → lalsuite-7.26.2.dev20251202.data}/scripts/lalinference_compute_roq_weights

@@ -1,5 +1,4 @@
 #!python
-##(in place of shebang, for consistent line numbers)
 import numpy as np
 from math import ceil
 from optparse import OptionParser
@@ -243,7 +242,7 @@ elif os.path.exists(params_linear_path) and os.path.exists(params_quadratic_path
     selected_params_linear = np.load(params_linear_path)
     selected_params_quadratic = np.load(params_quadratic_path)
     fnodes_linear, B_linear = construct_nodes(selected_params_linear, flow_in_params, fhigh_in_params, deltaF_in_params, options.approximant, False)
-    fnodes_quadratic, B_quadratic = construct_nodes(selected_params_linear, flow_in_params, fhigh_in_params, deltaF_in_params, options.approximant, True)
+    fnodes_quadratic, B_quadratic = construct_nodes(selected_params_quadratic, flow_in_params, fhigh_in_params, deltaF_in_params, options.approximant, True)
 else:
     print("No ROQ data found. Please make sure that you have B_(linear, quadratic).npy "
           "and fnodes_(linear, quadratic).npy, or selected_params_(linear, quadratic).npy")

{lalsuite-7.22.1.dev20240408.data → lalsuite-7.26.2.dev20251202.data}/scripts/lalinference_cpnest

@@ -1,9 +1,20 @@
 #!python
-##(in place of shebang, for consistent line numbers)
 import sys
 import argparse
 from lalinference.wrapper import LALInferenceCBCWrapper
 import os.path
+
+if __name__=='__main__':
+    parser = argparse.ArgumentParser(description='Nested sampling for CBC analysis')
+    parser.add_argument('--nlive',type=int,default=1000)
+    parser.add_argument('--nthreads',type=int,default=1)
+    parser.add_argument('--verbose',action='store_true',default=False)
+    parser.add_argument('--outfile',required=True)
+    parser.add_argument('--plot',default=False,const=True,nargs='?')
+    parser.add_argument('--maxmcmc',default=5000,type=int)
+    parser.add_argument('--poolsize',default=500,type=int)
+    opts, args = parser.parse_known_args(sys.argv)
+
 try:
     import cpnest.model
 except ImportError as exc:
@@ -35,15 +46,6 @@ class LIModel(cpnest.model.Model):
         return logp
 
 if __name__=='__main__':
-    parser = argparse.ArgumentParser(description='Nested sampling for CBC analysis')
-    parser.add_argument('--nlive',type=int,default=1000)
-    parser.add_argument('--nthreads',type=int,default=1)
-    parser.add_argument('--verbose',action='store_true',default=False)
-    parser.add_argument('--outfile',required=True)
-    parser.add_argument('--plot',default=False,const=True,nargs='?')
-    parser.add_argument('--maxmcmc',default=5000,type=int)
-    parser.add_argument('--poolsize',default=500,type=int)
-    opts, args = parser.parse_known_args(sys.argv)
     print(args)
     LIstate = LIModel(sys.argv)
     nest=cpnest.CPNest(LIstate, nlive=opts.nlive, nthreads=opts.nthreads, verbose=opts.verbose, maxmcmc=opts.maxmcmc, poolsize=opts.poolsize)
@@ -54,4 +56,3 @@ if __name__=='__main__':
 
 #if __name__=='__main__':
 #    main()
-

lalsuite-7.26.2.dev20251202.data/scripts/lalinference_datadump

@@ -0,0 +1,6 @@
+#!python
+import os
+import sys
+from importlib.resources import files, as_file
+with as_file(files('lalapps') / 'bin' / 'lalinference_datadump') as path:
+    os.execv(path, sys.argv)

{lalsuite-7.22.1.dev20240408.data → lalsuite-7.26.2.dev20251202.data}/scripts/lalinference_evolve_spins_and_append_samples

@@ -1,5 +1,4 @@
 #!python
-##(in place of shebang, for consistent line numbers)
 '''
 Code to read in LALInference HDF5 posterior samples, evolve the spins up to a specified value (default: Schwarzschild ISCO), and write the resulting evolved spin samples to the HDF5 file.
 

lalsuite-7.26.2.dev20251202.data/scripts/lalinference_injectedlike

@@ -0,0 +1,6 @@
+#!python
+import os
+import sys
+from importlib.resources import files, as_file
+with as_file(files('lalapps') / 'bin' / 'lalinference_injectedlike') as path:
+    os.execv(path, sys.argv)

{lalsuite-7.22.1.dev20240408.data → lalsuite-7.26.2.dev20251202.data}/scripts/lalinference_merge_posteriors

@@ -1,5 +1,4 @@
 #!python
-##(in place of shebang, for consistent line numbers)
 
 # resample posteriors (C) John Veitch, 2015
 
@@ -56,5 +55,3 @@ if __name__=='__main__':
     # Write output file
     if opts.output is not None:
         outObj.write_to_file(opts.output)
-
-

lalsuite-7.26.2.dev20251202.data/scripts/lalinference_mpi_wrapper

@@ -0,0 +1,6 @@
+#!python
+import os
+import sys
+from importlib.resources import files, as_file
+with as_file(files('lalapps') / 'bin' / 'lalinference_mpi_wrapper') as path:
+    os.execv(path, sys.argv)

{lalsuite-7.22.1.dev20240408.data → lalsuite-7.26.2.dev20251202.data}/scripts/lalinference_multi_pipe

@@ -1,11 +1,10 @@
 #!python
-##(in place of shebang, for consistent line numbers)
 # DAG generation code for running LALInference pipeline
 # (C) 2012 John Veitch
 # 2013 Salvatore Vitale: extended to work with several ini files
 
 from lalinference import lalinference_pipe_utils as pipe_utils
-from six.moves import configparser
+import configparser
 from optparse import OptionParser
 import sys
 
@@ -88,7 +87,10 @@ first_dag=True
 common_path=opts.run_path
 
 for inifile in inits:
-  cp.readfp(open(inifile))
+  try:
+    cp.read_file(open(inifile))
+  except AttributeError:
+    cp.readfp(open(inifile))
   if opts.run_path is not None:
     cp.set('paths','basedir',opts.run_path)
   if opts.daglog_path is not None:

lalsuite-7.26.2.dev20251202.data/scripts/lalinference_nest

@@ -0,0 +1,6 @@
+#!python
+import os
+import sys
+from importlib.resources import files, as_file
+with as_file(files('lalapps') / 'bin' / 'lalinference_nest') as path:
+    os.execv(path, sys.argv)

{lalsuite-7.22.1.dev20240408.data → lalsuite-7.26.2.dev20251202.data}/scripts/lalinference_nest2pos

@@ -1,5 +1,4 @@
 #!python
-##(in place of shebang, for consistent line numbers)
 from numpy import loadtxt, logaddexp, log, mean
 from optparse import OptionParser
 import gzip

{lalsuite-7.22.1.dev20240408.data → lalsuite-7.26.2.dev20251202.data}/scripts/lalinference_pipe

@@ -1,19 +1,17 @@
 #!python
-##(in place of shebang, for consistent line numbers)
 # DAG generation code for running LALInference pipeline
 # (C) 2012 John Veitch, Vivien Raymond
 
 from lalinference import lalinference_pipe_utils as pipe_utils
 import numpy as np
-from six.moves import configparser
+import configparser
 from optparse import OptionParser
 import sys
 import os
 import uuid
-from glue import pipeline
-from ligo.lw import ligolw
-from ligo.lw import lsctables
-from ligo.lw import utils as ligolw_utils
+from lal import pipeline
+from igwn_ligolw import lsctables
+from igwn_ligolw import utils as ligolw_utils
 
 usage=""" %prog [options] config.ini
 Setup a Condor DAG file to run the LALInference pipeline based on
@@ -216,7 +214,10 @@ inifile=args[0]
 cp=configparser.SafeConfigParser()
 fp=open(inifile)
 cp.optionxform = str
-cp.readfp(fp)
+try:
+    cp.read_file(fp)
+except AttributeError:
+    cp.readfp(fp)
 fp.close()
 
 # Set the base directory for the run
@@ -321,15 +322,15 @@ def setup_roq(cp):
             client = GraceDb(cp.get('analysis', 'service-url'))
         else:
             client = GraceDb()
-        coinc_xml_obj = ligolw_utils.load_fileobj(client.files(gid, "coinc.xml"), contenthandler = lsctables.use_in(ligolw.LIGOLWContentHandler))[0]
+        coinc_xml_obj = ligolw_utils.load_fileobj(client.files(gid, "coinc.xml"))[0]
     elif cp.has_option('input', 'coinc-xml'):
-        coinc_xml_obj = ligolw_utils.load_fileobj(open(cp.get('input', 'coinc-xml'), "rb"), contenthandler = lsctables.use_in(ligolw.LIGOLWContentHandler))[0]
+        coinc_xml_obj = ligolw_utils.load_fileobj(open(cp.get('input', 'coinc-xml'), "rb"))[0]
 
     # Get sim_inspiral from injection file
     if cp.has_option('input','injection-file'):
         print("Only 0-th event in the XML table will be considered while running with ROQ\n")
         row = lsctables.SimInspiralTable.get_table(
-                  ligolw_utils.load_filename(cp.get('input','injection-file'),contenthandler=lsctables.use_in(ligolw.LIGOLWContentHandler))
+                  ligolw_utils.load_filename(cp.get('input','injection-file'))
               )[0]
 
     roq_bounds = pipe_utils.Query_ROQ_Bounds_Type(path, roq_paths)

{lalsuite-7.22.1.dev20240408.data → lalsuite-7.26.2.dev20251202.data}/scripts/lalinference_pp_pipe

@@ -1,5 +1,4 @@
 #!python
-##(in place of shebang, for consistent line numbers)
 # End-to-end LALInference test pipeline
 # (C) 2014 John Veitch
 
@@ -10,9 +9,9 @@ import sys
 import uuid
 from optparse import OptionParser
 
-from six.moves.configparser import ConfigParser
+from configparser import ConfigParser
 
-from glue import pipeline
+from lal import pipeline
 
 from lalinference import lalinference_pipe_utils as pipe_utils
 from lalinference.lalinference_pipe_utils import mkdirs
@@ -43,11 +42,17 @@ inifile=args[0]
 
 prior_cp=ConfigParser()
 prior_cp.optionxform = str
-prior_cp.readfp(open(inifile))
+try:
+  prior_cp.read_file(open(inifile))
+except AttributeError:
+  prior_cp.readfp(open(inifile))
 
 main_cp=ConfigParser()
 main_cp.optionxform = str
-main_cp.readfp(open(inifile))
+try:
+  main_cp.read_file(open(inifile))
+except AttributeError:
+  main_cp.readfp(open(inifile))
 
 # Remove gps start and end time options
 for option in ['gps-start-time','gps-end-time']:
@@ -222,4 +227,3 @@ maindag.write_script()
 # End of program
 print('Successfully created DAG file.')
 print('Now run condor_submit_dag %s\n'%(outerdag.get_dag_file()))
-

{lalsuite-7.22.1.dev20240408.data → lalsuite-7.26.2.dev20251202.data}/scripts/lalinference_review_test

@@ -1,5 +1,4 @@
 #!python
-##(in place of shebang, for consistent line numbers)
 import argparse
 import shutil
 import os
@@ -8,7 +7,7 @@ import subprocess
 import glob
 import lalinference
 
-from six.moves.configparser import SafeConfigParser
+from configparser import ConfigParser
 
 prefix=''
 try:
@@ -103,10 +102,13 @@ except KeyError:
     sys.exit()
 
 def init_ini_file(file=args.ini_file):
-    cp=SafeConfigParser()
+    cp=ConfigParser()
     fp=open(file)
     cp.optionxform = str
-    cp.readfp(fp)
+    try:
+        cp.read_file(fp)
+    except AttributeError:
+        cp.readfp(fp)
     fp.close()
 
     cp.set('condor','lalsuite-install',lalinf_prefix)
@@ -358,4 +360,3 @@ if args.pptest:
             if args.condor_submit:
                 condor_submit_dag = ['condor_submit_dag', os.path.join(args.output, 'pptest', engine, approximant, 'run/priortest.dag')]
                 subprocess.call(condor_submit_dag)
-

lalsuite-7.26.2.dev20251202.data/scripts/lalinference_version

@@ -0,0 +1,6 @@
+#!python
+import os
+import sys
+from importlib.resources import files, as_file
+with as_file(files('lalapps') / 'bin' / 'lalinference_version') as path:
+    os.execv(path, sys.argv)

{lalsuite-7.22.1.dev20240408.data → lalsuite-7.26.2.dev20251202.data}/scripts/lalinspiral_injfind

@@ -1,5 +1,4 @@
 #!python
-##(in place of shebang, for consistent line numbers)
 #
 # Copyright (C) 2006--2009,2013,2014,2016,2017  Kipp Cannon
 #
@@ -36,9 +35,9 @@ from optparse import OptionParser
 import sys
 
 
-from ligo.lw import lsctables
-from ligo.lw import utils as ligolw_utils
-from ligo.lw.utils import process as ligolw_process
+from igwn_ligolw import lsctables
+from igwn_ligolw import utils as ligolw_utils
+from igwn_ligolw.utils import process as ligolw_process
 from lalinspiral import inspinjfind
 
 
@@ -149,7 +148,7 @@ for n, filename in enumerate(filenames, start = 1):
 
 	if options.verbose:
 		print("%d/%d:" % (n, len(filenames)), end=' ', file=sys.stderr)
-	xmldoc = ligolw_utils.load_filename(filename, contenthandler = inspinjfind.LIGOLWContentHandler, verbose = options.verbose)
+	xmldoc = ligolw_utils.load_filename(filename, verbose = options.verbose)
 
 	#
 	# process

{lalsuite-7.22.1.dev20240408.data → lalsuite-7.26.2.dev20251202.data}/scripts/lalinspiral_thinca

@@ -1,5 +1,4 @@
 #!python
-##(in place of shebang, for consistent line numbers)
 #
 # Copyright (C) 2008--2017  Kipp Cannon
 #
@@ -31,17 +30,13 @@ from optparse import OptionParser
 import sys
 
 
-from ligo.lw import ligolw
-from ligo.lw import lsctables
-from ligo.lw import utils as ligolw_utils
-from ligo.lw.utils import process as ligolw_process
-from ligo.lw.utils import segments as ligolw_segments
+from igwn_ligolw import lsctables
+from igwn_ligolw import utils as ligolw_utils
+from igwn_ligolw.utils import process as ligolw_process
+from igwn_ligolw.utils import segments as ligolw_segments
 import lal
 from lalinspiral import thinca
-from ligo.segments import utils as segmentsUtils
-
-
-lsctables.use_in(ligolw.LIGOLWContentHandler)
+from igwn_segments import utils as segmentsUtils
 
 
 __author__ = "Kipp Cannon <kipp.cannon@ligo.org>"
@@ -161,7 +156,7 @@ for n, filename in enumerate(filenames, start = 1):
 
 	if options.verbose:
 		print("%d/%d:" % (n, len(filenames)), end=' ', file=sys.stderr)
-	xmldoc = ligolw_utils.load_filename(filename, verbose = options.verbose, contenthandler = ligolw.LIGOLWContentHandler)
+	xmldoc = ligolw_utils.load_filename(filename, verbose = options.verbose)
 
 	#
 	# Have we already processed it?
@@ -202,7 +197,7 @@ for n, filename in enumerate(filenames, start = 1):
 	#
 	# Extract veto segments if present.
 	#
-	# FIXME:  using the tools in the ligo.lw.utils.segments module
+	# FIXME:  using the tools in the igwn_ligolw.utils.segments module
 	# it's not hard to modify the veto segments in the .xml to be just
 	# those that intersect the search summary segments.  That way, if
 	# multiple documents are inserted into the same database, or merged

lalsuite-7.26.2.dev20251202.data/scripts/lalinspiral_version

@@ -0,0 +1,6 @@
+#!python
+import os
+import sys
+from importlib.resources import files, as_file
+with as_file(files('lalapps') / 'bin' / 'lalinspiral_version') as path:
+    os.execv(path, sys.argv)

lalsuite-7.26.2.dev20251202.data/scripts/lalmetaio_version

@@ -0,0 +1,6 @@
+#!python
+import os
+import sys
+from importlib.resources import files, as_file
+with as_file(files('lalapps') / 'bin' / 'lalmetaio_version') as path:
+    os.execv(path, sys.argv)

lalsuite-7.26.2.dev20251202.data/scripts/lalpulsar_ComputeAntennaPattern

@@ -0,0 +1,6 @@
+#!python
+import os
+import sys
+from importlib.resources import files, as_file
+with as_file(files('lalapps') / 'bin' / 'lalpulsar_ComputeAntennaPattern') as path:
+    os.execv(path, sys.argv)

lalsuite-7.26.2.dev20251202.data/scripts/lalpulsar_ComputeFstatBenchmark

@@ -0,0 +1,6 @@
+#!python
+import os
+import sys
+from importlib.resources import files, as_file
+with as_file(files('lalapps') / 'bin' / 'lalpulsar_ComputeFstatBenchmark') as path:
+    os.execv(path, sys.argv)

lalsuite-7.26.2.dev20251202.data/scripts/lalpulsar_ComputeFstatLatticeCount

@@ -0,0 +1,6 @@
+#!python
+import os
+import sys
+from importlib.resources import files, as_file
+with as_file(files('lalapps') / 'bin' / 'lalpulsar_ComputeFstatLatticeCount') as path:
+    os.execv(path, sys.argv)

lalsuite-7.26.2.dev20251202.data/scripts/lalpulsar_ComputeFstatMCUpperLimit

@@ -0,0 +1,6 @@
+#!python
+import os
+import sys
+from importlib.resources import files, as_file
+with as_file(files('lalapps') / 'bin' / 'lalpulsar_ComputeFstatMCUpperLimit') as path:
+    os.execv(path, sys.argv)

lalsuite-7.26.2.dev20251202.data/scripts/lalpulsar_ComputeFstatistic_v2

@@ -0,0 +1,6 @@
+#!python
+import os
+import sys
+from importlib.resources import files, as_file
+with as_file(files('lalapps') / 'bin' / 'lalpulsar_ComputeFstatistic_v2') as path:
+    os.execv(path, sys.argv)

lalsuite-7.26.2.dev20251202.data/scripts/lalpulsar_ComputePSD

@@ -0,0 +1,6 @@
+#!python
+import os
+import sys
+from importlib.resources import files, as_file
+with as_file(files('lalapps') / 'bin' / 'lalpulsar_ComputePSD') as path:
+    os.execv(path, sys.argv)

{lalsuite-7.22.1.dev20240408.data → lalsuite-7.26.2.dev20251202.data}/scripts/lalpulsar_CopyPublicSFTs

@@ -1,5 +1,4 @@
 #!python
-##(in place of shebang, for consistent line numbers)
 # Copyright (C) 2022 Karl Wette
 #
 # This program is free software; you can redistribute it and/or modify
@@ -17,6 +16,8 @@
 # Free Software Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston,
 # MA  02110-1301  USA
 
+## \file
+## \ingroup lalpulsar_bin_SFTTools
 """Copy SFTs between directories. The destination directory is organised
 following the convention detailed in the SFT spec (T040164)."""
 
@@ -35,6 +36,7 @@ from lal import GetDebugLevel, ClobberDebugLevel
 from lalpulsar import git_version
 from lalpulsar import ValidateSFTFile, SFTErrorMessage
 from lalpulsar.public_sft_directory import public_sft_directory
+from lalpulsar.public_sft_directory import public_sft_directory_readme_md
 
 __author__ = "Karl Wette <karl.wette@ligo.org>"
 __version__ = git_version.id
@@ -67,6 +69,12 @@ def parse_command_line():
         action="store_false",
         help="do not validate destination SFTs",
     )
+    parser.add_argument(
+        "--readme-md",
+        dest="readme_md",
+        action="store_true",
+        help="write README.md in the destination directory",
+    )
     parser.add_argument("source_directory", type=str, help="SFT source directory")
     parser.add_argument("dest_directory", type=str, help="SFT destination directory")
     args = parser.parse_args()
@@ -185,6 +193,12 @@ def copy_all_SFT_files(src_dest_paths, validate, processes):
     print(f"{__file__}: copying {len(src_dest_paths)} SFTs ... done\n", flush=True)
 
 
+def write_readme_md(dest_directory):
+    # write README.md
+    with open(os.path.join(dest_directory, "README.md"), "w") as f:
+        f.write(public_sft_directory_readme_md())
+
+
 if __name__ == "__main__":
     args = parse_command_line()
 
@@ -196,4 +210,7 @@ if __name__ == "__main__":
 
     copy_all_SFT_files(src_dest_paths, args.validate, args.processes)
 
+    if args.readme_md:
+        write_readme_md(args.dest_directory)
+
     print(f"{__file__}: DONE", flush=True)

lalsuite-7.26.2.dev20251202.data/scripts/lalpulsar_DriveHoughMulti

@@ -0,0 +1,6 @@
+#!python
+import os
+import sys
+from importlib.resources import files, as_file
+with as_file(files('lalapps') / 'bin' / 'lalpulsar_DriveHoughMulti') as path:
+    os.execv(path, sys.argv)

lalsuite-7.26.2.dev20251202.data/scripts/lalpulsar_FstatMetric_v2

@@ -0,0 +1,6 @@
+#!python
+import os
+import sys
+from importlib.resources import files, as_file
+with as_file(files('lalapps') / 'bin' / 'lalpulsar_FstatMetric_v2') as path:
+    os.execv(path, sys.argv)

lalsuite-7.26.2.dev20251202.data/scripts/lalpulsar_HierarchSearchGCT

@@ -0,0 +1,6 @@
+#!python
+import os
+import sys
+from importlib.resources import files, as_file
+with as_file(files('lalapps') / 'bin' / 'lalpulsar_HierarchSearchGCT') as path:
+    os.execv(path, sys.argv)

lalsuite-7.26.2.dev20251202.data/scripts/lalpulsar_HierarchicalSearch

@@ -0,0 +1,6 @@
+#!python
+import os
+import sys
+from importlib.resources import files, as_file
+with as_file(files('lalapps') / 'bin' / 'lalpulsar_HierarchicalSearch') as path:
+    os.execv(path, sys.argv)