labfreed 0.2.6a6__py3-none-any.whl → 0.2.8a0__py3-none-any.whl
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- labfreed/__init__.py +1 -1
- labfreed/pac_id/pac_id.py +1 -1
- labfreed/pac_id/url_serializer.py +10 -6
- labfreed/pac_id_resolver/cit_v1.py +0 -3
- labfreed/pac_id_resolver/resolver.py +0 -1
- labfreed/pac_id_resolver/services.py +11 -8
- {labfreed-0.2.6a6.dist-info → labfreed-0.2.8a0.dist-info}/METADATA +29 -22
- {labfreed-0.2.6a6.dist-info → labfreed-0.2.8a0.dist-info}/RECORD +10 -10
- {labfreed-0.2.6a6.dist-info → labfreed-0.2.8a0.dist-info}/WHEEL +0 -0
- {labfreed-0.2.6a6.dist-info → labfreed-0.2.8a0.dist-info}/licenses/LICENSE +0 -0
labfreed/__init__.py
CHANGED
labfreed/pac_id/pac_id.py
CHANGED
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@@ -45,7 +45,7 @@ class PAC_ID(LabFREED_BaseModel):
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from labfreed.pac_id.url_parser import PAC_Parser
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return PAC_Parser.from_url(url, try_pac_cat=try_pac_cat, suppress_validation_errors=suppress_validation_errors, extension_interpreters=extension_interpreters)
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def to_url(self, use_short_notation=
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def to_url(self, use_short_notation:None|bool=None, uppercase_only=False) -> str:
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from labfreed.pac_id.url_serializer import PACID_Serializer
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return PACID_Serializer.to_url(self, use_short_notation=use_short_notation, uppercase_only=uppercase_only)
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@@ -9,20 +9,23 @@ class PACID_Serializer():
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'''Represents a PAC-ID including it's extensions'''
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@classmethod
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def to_url(cls, pac:PAC_ID, use_short_notation=
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def to_url(cls, pac:PAC_ID, use_short_notation:bool|None=None, uppercase_only=False) -> str:
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"""Serializes the PAC-ID including extensions.
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Args:
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use_short_notation (bool, optional):
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use_short_notation (bool|None, optional): None (default): Preserves the identifier as is. Extensions use short form
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True: forces short notation for categories and extensions
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False: forces long notation for categories and extensions
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uppercase_only (bool, optional): Forces all uppercase letters (results in smaller QR)..
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Returns:
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str: Something like this HTTPS://PAC.METTORIUS.COM/-MD/BAL500/1234*N$N/ABC*SUM$TREX/A$T.A:ABC
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"""
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extensions_str = cls._serialize_extensions(pac.extensions, use_short_notation=use_short_notation)
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identifier_str = cls._serialize_identifier(pac, use_short_notation=use_short_notation)
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use_short_notation_for_extensions = True if use_short_notation is None else use_short_notation
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extensions_str = cls._serialize_extensions(pac.extensions, use_short_notation=use_short_notation_for_extensions)
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out = f"HTTPS://PAC.{pac.issuer}{identifier_str}{extensions_str}"
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if uppercase_only:
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@@ -30,9 +33,10 @@ class PACID_Serializer():
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return out
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@classmethod
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def _serialize_identifier(cls, pac:PAC_ID|PAC_CAT, use_short_notation=
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def _serialize_identifier(cls, pac:PAC_ID|PAC_CAT, use_short_notation:None|bool=None):
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''' Serializes the PAC-ID'''
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if isinstance(pac, PAC_CAT) and use_short_notation is not None:
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for c in pac.categories:
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segments = [IDSegment(value=c.key)]
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if isinstance(c, PredefinedCategory):
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@@ -91,7 +91,6 @@ class CIT_v1(LabFREED_BaseModel):
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cols = [c.strip() for c in line.split('\t')]
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if len(cols) < 5:
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logging.error(f'invalid line {line}')
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msg = ValidationMessage(
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level=ValidationMsgLevel.ERROR,
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source='CIT line',
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errors.append(msg)
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continue
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if len(cols) > 5:
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logging.error(f'invalid line {line}')
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msg = ValidationMessage(
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level=ValidationMsgLevel.ERROR,
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source='CIT line',
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)
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entries.append(entry)
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except ValueError:
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logging.error(f'invalid line {line}')
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msg = ValidationMessage(
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level=ValidationMsgLevel.ERROR,
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source='CIT line',
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@@ -2,10 +2,11 @@
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from enum import auto, Enum
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from pydantic import Field
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import requests
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from concurrent.futures import ThreadPoolExecutor, as_completed
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import requests
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from rich import print
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from rich.table import Table
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@@ -24,15 +25,17 @@ class Service(LabFREED_BaseModel):
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url:str
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status:ServiceStatus =ServiceStatus.UNKNOWN
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def check_service_status(self):
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def check_service_status(self, session:requests.Session = None):
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'''Checks the availability of the service.'''
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s = session or requests
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try:
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r = head(self.url, timeout=2)
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r = s.head(self.url, timeout=2)
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if r.status_code < 400:
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self.status = ServiceStatus.ACTIVE
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else:
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self.status = ServiceStatus.INACTIVE
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except RequestException as e:
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except requests.RequestException as e:
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print(f"Request failed: {e}")
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self.status = ServiceStatus.INACTIVE
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@@ -42,12 +45,12 @@ class ServiceGroup(LabFREED_BaseModel):
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origin: str = ""
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services: list[Service] = Field(default_factory=list)
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def update_states(self):
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def update_states(self, session:requests.Session = None):
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'''Triggers each service to check if the url can be reached'''
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if not _has_internet_connection():
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raise ConnectionError("No Internet Connection")
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with ThreadPoolExecutor(max_workers=10) as executor:
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futures = [executor.submit(s.check_service_status) for s in self.services]
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futures = [executor.submit(s.check_service_status, session=session) for s in self.services]
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for _ in as_completed(futures):
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pass # just wait for all to finish
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def _has_internet_connection():
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try:
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get("https://1.1.1.1", timeout=3)
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requests.get("https://1.1.1.1", timeout=3)
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return True
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except RequestException:
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except requests.RequestException:
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return False
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@@ -1,6 +1,6 @@
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Metadata-Version: 2.4
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Name: labfreed
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Version: 0.2.
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Version: 0.2.8a0
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Summary: Python implementation of LabFREED building blocks
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Author-email: Reto Thürer <thuerer.r@buchi.com>
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Requires-Python: >=3.11
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@@ -38,7 +38,7 @@ Provides-Extra: dev
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[](https://pypi.org/project/labfreed/)  [](https://github.com/retothuerer/LabFREED/actions/workflows/run-tests.yml) [](LICENSE)
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This is a Python implementation of [LabFREED](https://labfreed.
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This is a Python implementation of [LabFREED](https://labfreed.org/) building blocks.
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## Supported Building Blocks
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- PAC-ID
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@@ -53,7 +53,7 @@ This is a Python implementation of [LabFREED](https://labfreed.wega-it.com) buil
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- base36 <> str conversions
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- PAC-ID Resolver
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- support for CIT v1
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- draft support for CIT
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- draft support for CIT v2 (improved version)
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- combined use of multiple cit in any combination of version
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- Generation of QR codes (PAC-ID with extensions)
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>> Validation Results
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>> ┌───────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────┐
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>> │ **RECOMMENDATION** in id segment value bal500 │
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>> │ Characters '
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>> │ Characters 'a','l','b' should not be used., Characters SHOULD be limited to upper case letters (A-Z), numbers (0-9), '-' and '+' │
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>> │ │
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>> │ HTTPS://PAC.METTORIUS.COM/-MD
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>> │ HTTPS://PAC.METTORIUS.COM/-MD/👉bal👈500/@1234 │
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>> ├───────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────┤
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>> │ **RECOMMENDATION** in id segment value @1234 │
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>> │ Characters '@' should not be used., Characters SHOULD be limited to upper case letters (A-Z), numbers (0-9), '-' and '+' │
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>> │ │
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>> │ HTTPS://PAC.METTORIUS.COM/-MD/
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>> │ HTTPS://PAC.METTORIUS.COM/-MD/bal500/👉@👈1234 │
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>> ├───────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────┤
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>> │ **RECOMMENDATION** in id segment value bal500 │
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>> │ Characters '
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>> │ Characters 'a','l','b' should not be used., Characters SHOULD be limited to upper case letters (A-Z), numbers (0-9), '-' and '+' │
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>> │ │
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>> │ HTTPS://PAC.METTORIUS.COM/-MD
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>> │ HTTPS://PAC.METTORIUS.COM/-MD/👉bal👈500/@1234 │
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>> ├───────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────┤
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>> │ **RECOMMENDATION** in id segment value @1234 │
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>> │ Characters '@' should not be used., Characters SHOULD be limited to upper case letters (A-Z), numbers (0-9), '-' and '+' │
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>> │ │
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>> │ HTTPS://PAC.METTORIUS.COM/-MD/
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>> │ HTTPS://PAC.METTORIUS.COM/-MD/bal500/👉@👈1234 │
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>> └───────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────┘
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```
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### Save as QR Code
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```
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```text
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>> Categories in
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>> HTTPS://PAC.METTORIUS.COM/-
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>>
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>> HTTPS://PAC.METTORIUS.COM/-DR/XQ90
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>> 8756/-MD/bal500/@1234
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>> ┌────────────────────┬───────────┐
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>> │ Main Category │ │
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>> │ key () │ -DR │
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@@ -248,7 +248,7 @@ trex.print_validation_messages()
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>> Validation Results
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>> ┌────────────────────────────────────────────────────────────┐
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>> │ **ERROR** in TREX table column Date │
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>> │ Column header key contains invalid characters: '
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>> │ Column header key contains invalid characters: 'a','t','e' │
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>> │ │
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>> │ STOP$T.D:20240505T1306 │
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>> │ +TEMP$KEL:10.15 │
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>> │ +COMMENT$T.A:FOO │
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>> │ +COMMENT2$T.T:12G3 │
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>> │ +TABLE$$DURATION$HUR:D👉ate👈$T.D:OK$T.B:COMMENT$T.A:: │
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>> │ 1:
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>> │ 1.1:
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>> │ 1.3:
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>> │ 1:20250513T080159.146:T:FOO:: │
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>> │ 1.1:20250513T080159.146:T:BAR:: │
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>> │ 1.3:20250513T080159.146:F:BLUBB │
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>> └────────────────────────────────────────────────────────────┘
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```
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#### Combine PAC-ID and TREX and serialize
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print(pac_str)
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```
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```text
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>> HTTPS://PAC.METTORIUS.COM/21:1234*MYTREX$TREX/STOP$T.D:20240505T1306+TEMP$KEL:10.15+OK$T.B:F+COMMENT$T.A:FOO+COMMENT2$T.T:12G3+TABLE$$DURATION$HUR:Date$T.D:OK$T.B:COMMENT$T.A::1:
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>> HTTPS://PAC.METTORIUS.COM/21:1234*MYTREX$TREX/STOP$T.D:20240505T1306+TEMP$KEL:10.15+OK$T.B:F+COMMENT$T.A:FOO+COMMENT2$T.T:12G3+TABLE$$DURATION$HUR:Date$T.D:OK$T.B:COMMENT$T.A::1:20250513T080159.146:T:FOO::1.1:20250513T080159.146:T:BAR::1.3:20250513T080159.146:F:BLUBB
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```
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## PAC-ID Resolver
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>> ┡━━━━━━━━━━━━━━╇━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━╇━━━━━━━━━━━┩
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>> │ CAS Search │ https://pubchem.ncbi.nlm.nih.gov/#query=7732-18-5 │ ACTIVE │
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>> └──────────────┴───────────────────────────────────────────────────┴───────────┘
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>> ┃ Service Name ┃ URL
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>> │ Chemical Management │ https://chem-manager.com/METTORIUS.COM/-MS/
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>>
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>> Services from origin 'MY_COMPANY
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>> ┏━━━━━━━━━━━━━━━━━━━━━┳━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━┳━━━━━━━━━━━┓
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>> ┃ Service Name ┃ URL ┃ Reachable ┃
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>> ┡━━━━━━━━━━━━━━━━━━━━━╇━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━╇━━━━━━━━━━━┩
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>> │ Chemical Management │ https://chem-manager.com/METTORIUS.COM/-MS/X3511/CAS:7732-18-5 │ INACTIVE │
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>> └─────────────────────┴────────────────────────────────────────────────────────────────┴───────────┘
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>> Services from origin 'METTORIUS.COM
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>> ┏━━━━━━━━━━━━━━┳━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━┳━━━━━━━━━━━┓
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>> ┃ Service Name ┃ URL ┃ Reachable ┃
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@@ -327,6 +327,13 @@ for sg in service_groups:
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<!-- BEGIN CHANGELOG -->
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## Change Log
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### v0.2.7
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- Improved README. No functional changes
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+
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+
### v0.2.6
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- PAC_ID.to_url() preserves the identifier as is by default but allows to force short or long notation.
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335
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+
- PAC-ID Resolver does not try to resolve PAC-CAT with CIT v1.
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### v0.2.5
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- resolvers checks service states by default
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- improvements and bugfixes in conversion from python types to TREX
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@@ -1,4 +1,4 @@
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1
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-
labfreed/__init__.py,sha256=
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1
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+
labfreed/__init__.py,sha256=T85RGoqlJ09bUZIMDx5Nj1VFwW3rGCSQER_mX5m2gYU,338
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2
2
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labfreed/labfreed_infrastructure.py,sha256=EPDSCaGxWakAoPpHyc6ltf-pOuKyS5829lj_EG6wa74,10072
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3
3
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labfreed/pac_cat/__init__.py,sha256=KNPtQzBD1XVohvG_ucOs7RJj-oi6biUTGB1k-T2o6pk,568
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4
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labfreed/pac_cat/category_base.py,sha256=lFQNiTUukyhWdaSCAI7CZxLtj6kNtnBCE4UsePwsGqE,1801
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@@ -7,15 +7,15 @@ labfreed/pac_cat/predefined_categories.py,sha256=5wnMCj-CrACV2W4lH13w7qynWIwi506
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7
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labfreed/pac_id/__init__.py,sha256=NGMbzkwQ4txKeT5pxdIZordwHO8J3_q84jzPanjKoHg,675
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8
8
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labfreed/pac_id/extension.py,sha256=zuHI8e51otPbpO1r1xDFh32uXTT8L5pCJn74B-aOUpI,1112
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9
9
|
labfreed/pac_id/id_segment.py,sha256=r5JU1SJuRXhZJJxy5T3xjrb598wIDTLpivSJhIUAzjQ,4526
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10
|
-
labfreed/pac_id/pac_id.py,sha256=
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10
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+
labfreed/pac_id/pac_id.py,sha256=PyOa5y2IVLEcmj7ZkFuURC1lrP3BU0Yj8pzAllhtatw,5309
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11
11
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labfreed/pac_id/url_parser.py,sha256=TAQHxFf7Li8GA517mfOivmnJAJgh782oaSDzmOOkyTE,5942
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12
|
-
labfreed/pac_id/url_serializer.py,sha256=
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12
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+
labfreed/pac_id/url_serializer.py,sha256=BgGoU_8W0Lvo153cXH8gX1k8H-FJtGizsEzjRaaEMcg,3270
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13
13
|
labfreed/pac_id_resolver/__init__.py,sha256=RNBlrDOSR42gmSNH9wJVhK_xwEX45cvTKVgWW2bjh7Q,113
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14
14
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labfreed/pac_id_resolver/cit_common.py,sha256=xEkSSumj_IYgnXn3yKvoTBbgExnIfPY7E-RHU-7pcX8,2905
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15
|
-
labfreed/pac_id_resolver/cit_v1.py,sha256=
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15
|
+
labfreed/pac_id_resolver/cit_v1.py,sha256=W7UCO0Gm0w09FSo_USFB1-V2tl3iErDxoe2OHh4fkvc,9383
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16
16
|
labfreed/pac_id_resolver/cit_v2.py,sha256=wM1wf8UWbepatWNgkJ3l0l-HNJHqsqqPMql5k8fkVso,12127
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17
|
-
labfreed/pac_id_resolver/resolver.py,sha256=
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18
|
-
labfreed/pac_id_resolver/services.py,sha256=
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17
|
+
labfreed/pac_id_resolver/resolver.py,sha256=UfSxRwTTjSgL4VoHfsQiaGTj3tt8dTDDd2wVcbr2Xvc,2817
|
|
18
|
+
labfreed/pac_id_resolver/services.py,sha256=fCt-CBUKoEm4-SZqlkt94Or-BnmJ91Q5kZO9ydPw55s,2609
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19
19
|
labfreed/qr/__init__.py,sha256=fdKwP6W2Js--yMbBUdn-g_2uq2VqPpfQJeDLHsMDO-Y,61
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|
20
20
|
labfreed/qr/generate_qr.py,sha256=mSt-U872O3ReHB_UdS-MzYu0wRgdlKcAOEfTxg5CLRk,16616
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21
21
|
labfreed/trex/__init__.py,sha256=r0MYrGk_XxsqSKo9c2i9jRXApTDeTZD8QRXcRpkOVXY,428
|
|
@@ -39,7 +39,7 @@ labfreed/well_known_keys/labfreed/well_known_keys.py,sha256=nqk66kHdSwJTJfMKlP-x
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39
39
|
labfreed/well_known_keys/unece/UneceUnits.json,sha256=kwfQSp_nTuWbADfBBgqTWrvPl6XtM5SedEVLbMJrM7M,898953
|
|
40
40
|
labfreed/well_known_keys/unece/__init__.py,sha256=MSP9lmjg9_D9iqG9Yq2_ajYfQSNS9wIT7FXA1c--59M,122
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|
41
41
|
labfreed/well_known_keys/unece/unece_units.py,sha256=gNDQk6KGl-nGMf9Ycq_fQ8P2xxKITgLkcQWPd4H49gI,1630
|
|
42
|
-
labfreed-0.2.
|
|
43
|
-
labfreed-0.2.
|
|
44
|
-
labfreed-0.2.
|
|
45
|
-
labfreed-0.2.
|
|
42
|
+
labfreed-0.2.8a0.dist-info/licenses/LICENSE,sha256=gHFOv9FRKHxO8cInP3YXyPoJnuNeqrvcHjaE_wPSsQ8,1100
|
|
43
|
+
labfreed-0.2.8a0.dist-info/WHEEL,sha256=G2gURzTEtmeR8nrdXUJfNiB3VYVxigPQ-bEQujpNiNs,82
|
|
44
|
+
labfreed-0.2.8a0.dist-info/METADATA,sha256=KvCNBK689qFYtUn9K2Q3FGM_IHXYEJoSluP3futDVRU,18797
|
|
45
|
+
labfreed-0.2.8a0.dist-info/RECORD,,
|
|
File without changes
|
|
File without changes
|