labfreed 0.2.5a22__py3-none-any.whl → 0.2.6__py3-none-any.whl

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  1. labfreed/__init__.py +11 -11
  2. labfreed/labfreed_infrastructure.py +258 -256
  3. labfreed/pac_cat/__init__.py +19 -19
  4. labfreed/pac_cat/category_base.py +51 -51
  5. labfreed/pac_cat/pac_cat.py +150 -150
  6. labfreed/pac_cat/predefined_categories.py +200 -200
  7. labfreed/pac_id/__init__.py +19 -19
  8. labfreed/pac_id/extension.py +48 -48
  9. labfreed/pac_id/id_segment.py +89 -89
  10. labfreed/pac_id/pac_id.py +140 -140
  11. labfreed/pac_id/url_parser.py +155 -153
  12. labfreed/pac_id/url_serializer.py +84 -80
  13. labfreed/pac_id_resolver/__init__.py +2 -2
  14. labfreed/pac_id_resolver/cit_common.py +82 -0
  15. labfreed/pac_id_resolver/cit_v1.py +245 -149
  16. labfreed/pac_id_resolver/cit_v2.py +313 -303
  17. labfreed/pac_id_resolver/resolver.py +97 -85
  18. labfreed/pac_id_resolver/services.py +79 -79
  19. labfreed/qr/__init__.py +1 -1
  20. labfreed/qr/generate_qr.py +422 -422
  21. labfreed/trex/__init__.py +16 -16
  22. labfreed/trex/python_convenience/__init__.py +3 -3
  23. labfreed/trex/python_convenience/data_table.py +87 -87
  24. labfreed/trex/python_convenience/pyTREX.py +248 -248
  25. labfreed/trex/python_convenience/quantity.py +66 -66
  26. labfreed/trex/table_segment.py +245 -245
  27. labfreed/trex/trex.py +69 -69
  28. labfreed/trex/trex_base_models.py +209 -209
  29. labfreed/trex/value_segments.py +99 -99
  30. labfreed/utilities/base36.py +82 -82
  31. labfreed/well_known_extensions/__init__.py +4 -4
  32. labfreed/well_known_extensions/default_extension_interpreters.py +6 -6
  33. labfreed/well_known_extensions/display_name_extension.py +40 -40
  34. labfreed/well_known_extensions/trex_extension.py +30 -30
  35. labfreed/well_known_keys/gs1/__init__.py +5 -5
  36. labfreed/well_known_keys/gs1/gs1.py +3 -3
  37. labfreed/well_known_keys/labfreed/well_known_keys.py +15 -15
  38. labfreed/well_known_keys/unece/__init__.py +3 -3
  39. labfreed/well_known_keys/unece/unece_units.py +67 -67
  40. {labfreed-0.2.5a22.dist-info → labfreed-0.2.6.dist-info}/METADATA +37 -21
  41. labfreed-0.2.6.dist-info/RECORD +45 -0
  42. {labfreed-0.2.5a22.dist-info → labfreed-0.2.6.dist-info}/licenses/LICENSE +21 -21
  43. labfreed-0.2.5a22.dist-info/RECORD +0 -44
  44. {labfreed-0.2.5a22.dist-info → labfreed-0.2.6.dist-info}/WHEEL +0 -0
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: labfreed
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- Version: 0.2.5a22
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+ Version: 0.2.6
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  Summary: Python implementation of LabFREED building blocks
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  Author-email: Reto Thürer <thuerer.r@buchi.com>
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  Requires-Python: >=3.11
@@ -27,6 +27,10 @@ Requires-Dist: pytest>=8.3.5 ; extra == "dev"
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  Requires-Dist: pdoc>=15.0.1 ; extra == "dev"
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  Requires-Dist: flit>=3.12.0 ; extra == "dev"
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  Requires-Dist: ruff>=0.11.5 ; extra == "dev"
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+ Project-URL: Documentation, https://github.com/retothuerer/LabFREED?tab=readme-ov-file#readme
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+ Project-URL: Homepage, https://github.com/retothuerer/LabFREED
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+ Project-URL: Source, https://github.com/retothuerer/LabFREED
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+ Project-URL: Tracker, https://github.com/retothuerer/LabFREED/issues
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  Provides-Extra: dev
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  # LabFREED for Python
@@ -101,24 +105,24 @@ pac.print_validation_messages()
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  >> Validation Results
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  >> ┌───────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────┐
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  >> │ **RECOMMENDATION** in id segment value bal500 │
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- >> │ Characters 'a','l','b' should not be used., Characters SHOULD be limited to upper case letters (A-Z), numbers (0-9), '-' and '+' │
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+ >> │ Characters 'l','b','a' should not be used., Characters SHOULD be limited to upper case letters (A-Z), numbers (0-9), '-' and '+' │
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  >> │ │
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- >> │ HTTPS://PAC.METTORIUS.COM/-MD/240:👉bal👈500/21:@1234
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+ >> │ HTTPS://PAC.METTORIUS.COM/-MD/👉bal👈500/@1234
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  >> ├───────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────┤
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  >> │ **RECOMMENDATION** in id segment value @1234 │
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  >> │ Characters '@' should not be used., Characters SHOULD be limited to upper case letters (A-Z), numbers (0-9), '-' and '+' │
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  >> │ │
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- >> │ HTTPS://PAC.METTORIUS.COM/-MD/240:bal500/21:👉@👈1234
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+ >> │ HTTPS://PAC.METTORIUS.COM/-MD/bal500/👉@👈1234
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  >> ├───────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────┤
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  >> │ **RECOMMENDATION** in id segment value bal500 │
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- >> │ Characters 'a','l','b' should not be used., Characters SHOULD be limited to upper case letters (A-Z), numbers (0-9), '-' and '+' │
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+ >> │ Characters 'l','b','a' should not be used., Characters SHOULD be limited to upper case letters (A-Z), numbers (0-9), '-' and '+' │
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  >> │ │
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- >> │ HTTPS://PAC.METTORIUS.COM/-MD/240:👉bal👈500/21:@1234
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+ >> │ HTTPS://PAC.METTORIUS.COM/-MD/👉bal👈500/@1234
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  >> ├───────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────┤
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  >> │ **RECOMMENDATION** in id segment value @1234 │
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  >> │ Characters '@' should not be used., Characters SHOULD be limited to upper case letters (A-Z), numbers (0-9), '-' and '+' │
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  >> │ │
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- >> │ HTTPS://PAC.METTORIUS.COM/-MD/240:bal500/21:👉@👈1234
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+ >> │ HTTPS://PAC.METTORIUS.COM/-MD/bal500/👉@👈1234
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  >> └───────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────┘
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  ```
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  ### Save as QR Code
@@ -148,8 +152,8 @@ if isinstance(pac, PAC_CAT):
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  ```
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  ```text
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  >> Categories in
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- >> HTTPS://PAC.METTORIUS.COM/-MD/240:
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- >> bal500/21:@1234
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+ >> HTTPS://PAC.METTORIUS.COM/-DR/XQ90
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+ >> 8756/-MD/bal500/@1234
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  >> ┌────────────────────┬───────────┐
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  >> │ Main Category │ │
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  >> │ key () │ -DR │
@@ -244,7 +248,7 @@ trex.print_validation_messages()
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  >> Validation Results
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  >> ┌────────────────────────────────────────────────────────────┐
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  >> │ **ERROR** in TREX table column Date │
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- >> │ Column header key contains invalid characters: 'a','t','e' │
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+ >> │ Column header key contains invalid characters: 't','a','e' │
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  >> │ │
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  >> │ STOP$T.D:20240505T1306 │
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  >> │ +TEMP$KEL:10.15 │
@@ -252,9 +256,9 @@ trex.print_validation_messages()
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  >> │ +COMMENT$T.A:FOO │
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  >> │ +COMMENT2$T.T:12G3 │
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  >> │ +TABLE$$DURATION$HUR:D👉ate👈$T.D:OK$T.B:COMMENT$T.A:: │
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- >> │ 1:20250425T081731.192:T:FOO:: │
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- >> │ 1.1:20250425T081731.192:T:BAR:: │
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- >> │ 1.3:20250425T081731.192:F:BLUBB │
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+ >> │ 1:20250509T101159.922:T:FOO:: │
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+ >> │ 1.1:20250509T101159.922:T:BAR:: │
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+ >> │ 1.3:20250509T101159.922:F:BLUBB │
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  >> └────────────────────────────────────────────────────────────┘
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  ```
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  #### Combine PAC-ID and TREX and serialize
@@ -266,7 +270,7 @@ pac_str = pac.to_url()
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  print(pac_str)
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  ```
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  ```text
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- >> HTTPS://PAC.METTORIUS.COM/21:1234*MYTREX$TREX/STOP$T.D:20240505T1306+TEMP$KEL:10.15+OK$T.B:F+COMMENT$T.A:FOO+COMMENT2$T.T:12G3+TABLE$$DURATION$HUR:Date$T.D:OK$T.B:COMMENT$T.A::1:20250425T081731.192:T:FOO::1.1:20250425T081731.192:T:BAR::1.3:20250425T081731.192:F:BLUBB
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+ >> HTTPS://PAC.METTORIUS.COM/21:1234*MYTREX$TREX/STOP$T.D:20240505T1306+TEMP$KEL:10.15+OK$T.B:F+COMMENT$T.A:FOO+COMMENT2$T.T:12G3+TABLE$$DURATION$HUR:Date$T.D:OK$T.B:COMMENT$T.A::1:20250509T101159.922:T:FOO::1.1:20250509T101159.922:T:BAR::1.3:20250509T101159.922:F:BLUBB
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  ```
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  ## PAC-ID Resolver
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@@ -292,7 +296,6 @@ cit2.origin = 'MY_COMPANY'
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  pac_str = 'HTTPS://PAC.METTORIUS.COM/-MS/X3511/CAS:7732-18-5'
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  service_groups = PAC_ID_Resolver(cits=[cit, cit2]).resolve(pac_str)
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  for sg in service_groups:
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- sg.update_states()
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  sg.print()
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  ```
@@ -303,12 +306,12 @@ for sg in service_groups:
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  >> ┡━━━━━━━━━━━━━━╇━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━╇━━━━━━━━━━━┩
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  >> │ CAS Search │ https://pubchem.ncbi.nlm.nih.gov/#query=7732-18-5 │ ACTIVE │
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  >> └──────────────┴───────────────────────────────────────────────────┴───────────┘
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- >> Services from origin 'MY_COMPANY
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- >> ┏━━━━━━━━━━━━━━━━━━━━━┳━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━┳━━━━━━━━━━━┓
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- >> ┃ Service Name ┃ URL ┃ Reachable ┃
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- >> ┡━━━━━━━━━━━━━━━━━━━━━╇━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━╇━━━━━━━━━━━┩
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- >> │ Chemical Management │ https://chem-manager.com/METTORIUS.COM/-MS/240:X3511/CAS:7732-18-5 │ INACTIVE │
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- >> └─────────────────────┴────────────────────────────────────────────────────────────────────┴───────────┘
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+ >> Services from origin 'MY_COMPANY
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+ >> ┏━━━━━━━━━━━━━━━━━━━━━┳━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━┳━━━━━━━━━━━┓
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+ >> ┃ Service Name ┃ URL ┃ Reachable ┃
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+ >> ┡━━━━━━━━━━━━━━━━━━━━━╇━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━╇━━━━━━━━━━━┩
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+ >> │ Chemical Management │ https://chem-manager.com/METTORIUS.COM/-MS/X3511/CAS:7732-18-5 │ INACTIVE │
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+ >> └─────────────────────┴────────────────────────────────────────────────────────────────┴───────────┘
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  >> Services from origin 'METTORIUS.COM
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  >> ┏━━━━━━━━━━━━━━┳━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━┳━━━━━━━━━━━┓
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  >> ┃ Service Name ┃ URL ┃ Reachable ┃
@@ -324,6 +327,19 @@ for sg in service_groups:
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  <!-- BEGIN CHANGELOG -->
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  ## Change Log
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+ ### v0.2.6
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+ - PAC_ID.to_url() preserves the identifier as is by default but allows to force short or long notation.
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+ - PAC-ID Resolver does not try to resolve PAC-CAT with CIT v1.
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+
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+ ### v0.2.5
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+ - resolvers checks service states by default
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+ - improvements and bugfixes in conversion from python types to TREX
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+ - follow better naming conventions in CIT v1
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+
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+ ### v0.2.4
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+ - improvements in formatting of validation messages
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+ - bugfix in DataTable
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+
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  ### v0.2.3
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  - improvements in formatting of validation messages
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  - bugfix in DisplayNameExtension
@@ -0,0 +1,45 @@
1
+ labfreed/__init__.py,sha256=bHir6LGZvdIfPIMp63wwyLavW7XflNWRMKIc_AEbcac,325
2
+ labfreed/labfreed_infrastructure.py,sha256=hsz_nVKCT4evmBC4hZSNMwhHdpVXyVCty__RVjG4pZ8,9814
3
+ labfreed/pac_cat/__init__.py,sha256=9-bXwpENC53JXcw_P23zOfHP9LhZe5Zt0R03A9U0H8E,549
4
+ labfreed/pac_cat/category_base.py,sha256=XsN0SgBrVpVs3FBufETbEMAoVX-avDbEOM3HeYP--AQ,1750
5
+ labfreed/pac_cat/pac_cat.py,sha256=MobGLn4cEpxhw1h0h0wNvQr5xo58barlAzqbZCllucc,5168
6
+ labfreed/pac_cat/predefined_categories.py,sha256=qbdHGoPX6Mi42z9wkCLowP7zhnelk7QXU-HKuWJ6_Yk,8632
7
+ labfreed/pac_id/__init__.py,sha256=mEJFUFr7c1ZXMZ6wK43GI-ZQOkYO_xRfJqxoNjjKGa0,656
8
+ labfreed/pac_id/extension.py,sha256=QioDfpAHxeVbB0gknw7bmnyvgJBdxGWAJ1dTM_K_R7w,1064
9
+ labfreed/pac_id/id_segment.py,sha256=TCo8tumsX9xlAG2pJ7SLJWp-r6Rv9tz0e3DXXHFCg7M,4437
10
+ labfreed/pac_id/pac_id.py,sha256=Sev2PtkaIDE4En0kC0Mfj-LgdOlLtCRAuH1dGAlbIC8,5169
11
+ labfreed/pac_id/url_parser.py,sha256=XbUer6n_uqAVvy5qO7J9hmm8snwO_eQnnWnkYw42aIY,5787
12
+ labfreed/pac_id/url_serializer.py,sha256=NFiR3ax9DsvJU8gngIK8oq9JmbOApJAWdsknqYSGmzY,3186
13
+ labfreed/pac_id_resolver/__init__.py,sha256=ay7EfjTI2bRI8wCRg4wDO5jBX06AxfX9ruvdLvAdIcE,111
14
+ labfreed/pac_id_resolver/cit_common.py,sha256=wlqTNHuHMrlOeC30iWgr7p9OxCVL4Lf4XZAxq9k-DDg,2824
15
+ labfreed/pac_id_resolver/cit_v1.py,sha256=e10znXtAM230VLKN8mEFBMvVuKhpdXs9jjMLRXWdgro,9139
16
+ labfreed/pac_id_resolver/cit_v2.py,sha256=rZYXc1sc9cHAdVU1P6JZQOTDa0qqbJt4cEsujWWb-wo,11814
17
+ labfreed/pac_id_resolver/resolver.py,sha256=Q07sj32JwQ4qCCfv3n6IlL8Tp5lOIsMCT8BGZjZ_EnU,2720
18
+ labfreed/pac_id_resolver/services.py,sha256=JfOomN-M1O-GSlEsakoMr_GhYaf3-wi3ScJmMlCXXiM,2383
19
+ labfreed/qr/__init__.py,sha256=mPYR1wPiNT5AQxt25RmsL0CGAxMi2k77k3ZtG3flZSI,60
20
+ labfreed/qr/generate_qr.py,sha256=FzL5o8yQuT3r7x1huqT9EHmZoTTeHpU_lUP-WJXQrCU,16194
21
+ labfreed/trex/__init__.py,sha256=9koNu02tUadsPt6M9Ic7ff8HqwfIbFCShZvhz25o4ZA,412
22
+ labfreed/trex/table_segment.py,sha256=qhPy17VZsDRQlhNOby-KniWQstOCpAcO3GWN71Mu-5M,8909
23
+ labfreed/trex/trex.py,sha256=xPtLfKcE2d9peJQoNQpHvgUqB7Q78fMNwMdkTQcBuGE,2331
24
+ labfreed/trex/trex_base_models.py,sha256=FjahWBFyqnKHjHQgj7jeuBMDt4S2pELat6gJhsqQbwo,7336
25
+ labfreed/trex/value_segments.py,sha256=N4PYG2udxjApn3YzwPfyeGsfN3phJ7AndtoNFj51fMk,3613
26
+ labfreed/trex/python_convenience/__init__.py,sha256=RdfAbC5wcc5R1eYK3SxcSxTZ8I_tGTvnVYx18QMOVTk,134
27
+ labfreed/trex/python_convenience/data_table.py,sha256=BewmLd1i-V1PFrRPa4aswahNNGt9XhVHVJrw4TaU2vo,3071
28
+ labfreed/trex/python_convenience/pyTREX.py,sha256=3JCgy8WdN4PcPEtVF9O4z8a0fBxDjuvoNsC8eR3wQII,9917
29
+ labfreed/trex/python_convenience/quantity.py,sha256=qWB1FjeZEXa3VU2cKKnGlNgJSTEDjsn12OdG8qAhJnw,2195
30
+ labfreed/utilities/base36.py,sha256=WFvUCTbZ-lnMa6ffYgf9XhMO0C0-LpMmL2vtY86Nxj0,2813
31
+ labfreed/well_known_extensions/__init__.py,sha256=TKMQoFzo3fZ_7ZZ1KrDP53tY3X7VEr6_NLcx7BlbuWY,242
32
+ labfreed/well_known_extensions/default_extension_interpreters.py,sha256=mv9_KHuYlfeAZ_lbYrANJl4F-UnjIys2NxC74hG5T8w,195
33
+ labfreed/well_known_extensions/display_name_extension.py,sha256=INryMQ5RsTAwFR3p39NeM8hkKUbV9Alo5es4NC_EkUA,1425
34
+ labfreed/well_known_extensions/trex_extension.py,sha256=CEo_RQb4d0vpEvqq0XOLSdQo8pU8MMmMU1rNBZ3H3EU,899
35
+ labfreed/well_known_keys/gs1/__init__.py,sha256=oOWg_-Nyj9dCTGxx2wnitUubI_V51q6asRgw4rbJ0j4,98
36
+ labfreed/well_known_keys/gs1/gs1.py,sha256=RGi1MIzw-P6B0fOE6NMfM6OVcAUeeJIVAPrxob4esHU,76
37
+ labfreed/well_known_keys/gs1/gs1_ai_enum_sorted.py,sha256=D8hE6vm-GedS7W2uC52oYrvAKa4zM-7X11JeT_k23oM,1252
38
+ labfreed/well_known_keys/labfreed/well_known_keys.py,sha256=1_0tWwAQvX8V-3Uy0kQKt7TVXvC9hpGlsqpPXM6DVEA,316
39
+ labfreed/well_known_keys/unece/UneceUnits.json,sha256=kwfQSp_nTuWbADfBBgqTWrvPl6XtM5SedEVLbMJrM7M,898953
40
+ labfreed/well_known_keys/unece/__init__.py,sha256=CyYOsHXi9dVIDjMj61Y1O01zuUQ2RfnlNcDqpmUunos,119
41
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- The MIT License (MIT)
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-
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- Copyright (c) 2025 Reto Thürer
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-
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- Permission is hereby granted, free of charge, to any person obtaining a copy
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- of this software and associated documentation files (the "Software"), to deal
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- LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
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- OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
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- THE SOFTWARE.
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+ The MIT License (MIT)
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+
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+ Copyright (c) 2025 Reto Thürer
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+
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+ Permission is hereby granted, free of charge, to any person obtaining a copy
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+ of this software and associated documentation files (the "Software"), to deal
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+ in the Software without restriction, including without limitation the rights
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+ to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
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+ copies of the Software, and to permit persons to whom the Software is
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+ furnished to do so, subject to the following conditions:
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+
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+ The above copyright notice and this permission notice shall be included in
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+ all copies or substantial portions of the Software.
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+
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+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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+ IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
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+ FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
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+ AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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+ LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
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+ OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
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+ THE SOFTWARE.
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