labfreed 0.2.12__py3-none-any.whl → 0.3.0a1__py3-none-any.whl

labfreed/trex/python_convenience/quantity.py

@@ -1,3 +1,4 @@
+import re
 from pydantic import BaseModel, model_validator
 from labfreed.well_known_keys.unece.unece_units import unece_units
 
@@ -9,19 +10,27 @@ class Quantity(BaseModel):
     '''unit. Use SI symbols. Set to None of the Quantity is dimensionless'''
     log_least_significant_digit: int|None = None
     
+    
     @model_validator(mode='before')
     @classmethod
     def transform_inputs(cls, d:dict):
         if not isinstance(d, dict):
             return d
+        
         # decimals_to_log_significant_digits
         if decimals:= d.pop('decimals', None):
             d['log_least_significant_digit'] = - decimals
         
         #dimensionless_unit
-        unit= d.get('unit')
+        unit:str= d.get('unit')
         if unit and unit in ['1', '', 'dimensionless']:
             d['unit'] = None
+        
+        #try to coerce to ucum. catch the two most likely mistakes to use blanks for multiplication and ^ for exponents.
+        if unit:
+            unit = unit.replace('/ ', '/').replace(' /', '/').replace(' ', '.').replace('^', '')
+            d['unit'] = unit
+            
         return d
     
         
@@ -36,14 +45,86 @@ class Quantity(BaseModel):
         ''' for clarity returns the value'''
         return self.value
     
+    @classmethod
+    def from_str_value(cls, value:str, unit:str|None, log_least_significant_digit=None):
+        '''
+        Creates a quantity from a string representing a number (e.g. -12.345E-8 ).
+        It does some magic to find the least significant digit. NOTE: for numbers like 11000 it is ambiguous if the 
+        trailing zeros are significant. They will be treated as significant. Use scientific notation to be specific (i.e. 11e3 if the zeros are not significant)
+        '''
+        if '.' not in value and 'E' not in value: 
+            num_val = int(value)
+        else:
+            num_val = float(value)  
+        
+        
+        if log_least_significant_digit is None:
+            log_least_significant_digit = cls._find_log_significant_digits(value)
+        
+        q = Quantity(value = num_val, unit=unit, log_least_significant_digit=log_least_significant_digit)
+        return q
+    
+    @classmethod
+    def from_str_with_unit(cls, value:str):
+        ''' assumes value and unit are separated by " " '''
+        try:
+            parts = value.strip().split(' ', 1)
+            if len(parts) == 2:
+                str_value = parts[0]
+                unit = parts[1]
+                return cls.from_str_value(str_value, unit)
+        except Exception:
+            return None
+
+    @staticmethod
+    def _find_log_significant_digits(value:str):
+        s = value.strip()
+        m = re.match(r'^(?P<mantissa>-?\d+(\.\d+)?)([Ee]-?(?P<exponent>\d+))?$', s)
+        if m:
+            exponent = int( m.group('exponent') or 0 )
+            mantissa = m.group('mantissa')
+            
+        if '.' not in mantissa:
+            digits_after_decimal = 0
+            int_part = mantissa
+            m = re.match(r'-?\d+?(?P<trailing_zeros>0*)(\.\d+)?$', int_part)
+            if m:
+                trailing_zeros = m.group('trailing_zeros')
+                possible_non_significant_digits = len(trailing_zeros) # there is no way to know if they are really insignificant.  # noqa: F841
+                log_least_significant_digit =  exponent
+            
+        else:
+            int_part, frac_part = mantissa.rsplit('.', 1)
+            digits_after_decimal = len(frac_part)
+            
+            log_least_significant_digit = -digits_after_decimal + exponent
+            
+        return log_least_significant_digit
+
+
+
+            
+
+
+    
+    def value_as_str(self):
+        if self.log_least_significant_digit is not None:
+            log_digit = self.log_least_significant_digit
+            if log_digit <= 0:
+                val = f"{self.value:.{-log_digit}f}"
+            else:
+                factor = 10 ** log_digit
+                rounded = round(self.value / factor) * factor
+                val = str(int(rounded))
+        else:
+            val = str(self.value)
+        return val
+    
     def __str__(self):
         unit_symbol = self.unit
         if self.unit == "dimensionless" or not self.unit:
             unit_symbol = ""
-        if self.log_least_significant_digit is not None:
-            val = f"{self.value:.{self.log_least_significant_digit}f}"
-        else:
-            val = str(self.value)
+        val = self.value_as_str()
         return f"{val} {unit_symbol}"
       
     def __repr__(self):

labfreed/trex/value_segments.py

@@ -14,7 +14,7 @@ class ValueSegment(TREX_Segment, Value, ABC):
     
     @model_validator(mode='after')
     def _validate_type(self):
-        valid_types = valid_types = unece_unit_codes() + ['T.D', 'T.B', 'T.A', 'T.T', 'T.X', 'E']
+        valid_types = unece_unit_codes() + ['T.D', 'T.B', 'T.A', 'T.T', 'T.X', 'E']
         if self.type not in valid_types:
             self._add_validation_message(
                     source=f"TREX value segment {self.key}",

labfreed/utilities/ensure_utc_time.py

@@ -0,0 +1,6 @@
+from datetime import datetime, timezone
+
+
+def ensure_utc(dt: datetime) -> datetime:
+    '''Converts to UTC time. If dt has no timezone it is assumed to be in UTC and the utc timezone is explicitly added'''
+    return dt.replace(tzinfo=timezone.utc) if dt.tzinfo is None else dt.astimezone(timezone.utc)

labfreed/utilities/translations.py

@@ -0,0 +1,60 @@
+from pydantic import BaseModel, model_validator
+from typing import List, Optional
+import re
+
+
+class Translation(BaseModel):
+    language_code: str
+    text: str
+    
+    @staticmethod
+    def create(language_code:str, text:str):
+        '''provides a shorter form to init the model without the need to use keywords only'''
+        return Translation(language_code=language_code, text=text)
+    
+
+    @model_validator(mode="after")
+    def validate_language(self):
+        if not re.fullmatch(r"^[a-z]{2,3}(-[a-z]{2,3})?$", self.language_code.lower()):
+            raise ValueError(f"Invalid language code: {self.language_code}")
+        return self
+    
+    
+    @property
+    def language(self) -> str:
+        return self.language_code.split("-")[0].lower()
+
+    @property
+    def region(self) -> Optional[str]:
+        parts = self.language_code.split("-")
+        return parts[1].upper() if len(parts) == 2 else None
+    
+class Term(BaseModel):
+    key: str
+    translations: List[Translation]
+    
+    @staticmethod
+    def create(key:str, translations:List[Translation]|List[tuple]):
+        '''provides a shorter form to init the model without the need to use keywords only'''
+        translations = [ t if isinstance(t, Translation) else Translation.create(*t) for t in translations]
+        return Term(key=key, translations=translations)
+    
+    
+    def in_language(self, language_key: str) -> str | None:
+        for t in self.translations:
+            if t.language_code == language_key:
+                return t.text
+        return None
+    
+class Terms(BaseModel):
+    terms: List[Term]
+
+    def translations_for_term(self, term_key: str) -> Term | None:
+        for t in self.terms:
+            if t.key == term_key:
+                return t
+        return None
+    
+
+    
+

labfreed/well_known_extensions/display_name_extension.py

@@ -8,7 +8,7 @@ from labfreed.utilities.base36 import from_base36, to_base36
 
 class DisplayNameExtension(ExtensionBase, LabFREED_BaseModel):
     name:Literal['N'] = 'N'
-    type:Literal['N'] = 'N'
+    type:Literal['TEXT'] = 'TEXT'
     display_name: str       
     
     @computed_field
@@ -28,8 +28,8 @@ class DisplayNameExtension(ExtensionBase, LabFREED_BaseModel):
         if name != 'N':
             logging.warning(f'Name {name} was given, but this extension should only be used with name "N". Will ignore input')
             
-        if type != 'N':
-            logging.warning(f'Type {name} was given, but this extension should only be used with type "N". Will try to parse data as display names')
+        if type != 'TEXT':
+            logging.warning(f'Type {name} was given, but this extension should only be used with type "TEXT". Will try to parse data as display names')
         
         display_name = from_base36(data)
          

labfreed/well_known_keys/gs1/gs1_ai_enum_sorted.py

@@ -54,4 +54,8 @@ class GS1ApplicationIdentifier(Enum):
     NHRN_AIM = "714"
     NHRN_NDC = "715"
     NHRN_AIC = "716"
+    
+    def as_url(self) -> str:
+        # prefix the enum’s name to point to the description in the web
+        return f"ref.gs1.org/ai/{self.name}"
   

labfreed/well_known_keys/labfreed/well_known_keys.py

@@ -4,7 +4,7 @@ from enum import Enum
 class WellKnownKeys(Enum):
     GTIN = '01'
     BATCH = '10'
-    CONTAINER_CODE = '20'
+    VARIANT = '20'
     SERIAL = '21'
     ADDITIONAL_IDENTIFIER = '240'
     SECONDARY_SERIAL = '250'
@@ -15,4 +15,14 @@ class WellKnownKeys(Enum):
     METHOD_ID = 'MTD'
     REPORT_ID = 'RPT'
     TIMESTAMP = 'TS'
-    VERSION = 'V'
+    VERSION = 'V'
+    
+    MAXWEIGHT = "MAXWEIGHT"
+    LASTCALIBRATION = "LASTCAL"
+    NOMINALWEIGHT = "NOMINALWEIGHT"
+    
+    
+    def as_url(self) -> str:
+        # prefix the enum’s name to point to the description in the web
+        return f"labfreed.org/wkk/{self.name}"
+    

labfreed/well_known_keys/unece/unece_units.py

@@ -26,7 +26,8 @@ def unece_unit(unit_code):
         return unit[0]
     
 def unit_symbol(unit:dict) ->str:
-    return unit.get('symbol')
+    symbol:str = unit.get('symbol')
+    return symbol
 
 def unit_name(unit:dict) ->str:
     return unit.get('name')

{labfreed-0.2.12.dist-info → labfreed-0.3.0a1.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: labfreed
-Version: 0.2.12
+Version: 0.3.0a1
 Summary: Python implementation of LabFREED building blocks
 Author-email: Reto Thürer <thuerer.r@buchi.com>
 Requires-Python: >=3.11
@@ -28,16 +28,23 @@ Requires-Dist: pytest>=8.3.5 ; extra == "dev"
 Requires-Dist: pdoc>=15.0.1 ; extra == "dev"
 Requires-Dist: flit>=3.12.0 ; extra == "dev"
 Requires-Dist: ruff>=0.11.5 ; extra == "dev"
+Requires-Dist: Flask>=3.1.1 ; extra == "extended"
+Requires-Dist: openpyxl>=3.1.5 ; extra == "extended"
 Project-URL: Documentation, https://github.com/retothuerer/LabFREED?tab=readme-ov-file#readme
 Project-URL: Homepage, https://github.com/retothuerer/LabFREED
 Project-URL: Source, https://github.com/retothuerer/LabFREED
 Project-URL: Tracker, https://github.com/retothuerer/LabFREED/issues
 Provides-Extra: dev
+Provides-Extra: extended
 
 # LabFREED for Python
 
 [![PyPI](https://img.shields.io/pypi/v/labfreed.svg)](https://pypi.org/project/labfreed/) ![Python Version](https://img.shields.io/pypi/pyversions/labfreed) [![Test Labfreed](https://github.com/retothuerer/LabFREED/actions/workflows/run-tests.yml/badge.svg)](https://github.com/retothuerer/LabFREED/actions/workflows/run-tests.yml) [![License: MIT](https://img.shields.io/badge/License-MIT-blue.svg)](LICENSE) 
 
+<!--
+[![Ruff](https://img.shields.io/badge/style-Ruff-black?logo=ruff&labelColor=gray)](https://github.com/astral-sh/ruff)
+-->
+
 
 This is a Python implementation of [LabFREED](https://labfreed.org/) building blocks.
 

labfreed-0.3.0a1.dist-info/RECORD

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labfreed/well_known_keys/gs1/gs1.py

@@ -1,4 +0,0 @@
-'''
-Data from 
-https://ref.gs1.org/ai/GS1_Application_Identifiers.jsonld
-'''

labfreed-0.2.12.dist-info/RECORD

@@ -1,45 +0,0 @@
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