labelarray 0.1.0__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- labelarray/__init__.py +82 -0
- labelarray/__version__.py +1 -0
- labelarray/_compiled.py +101 -0
- labelarray/align.py +40 -0
- labelarray/array.py +474 -0
- labelarray/collection.py +267 -0
- labelarray/contract.py +47 -0
- labelarray/errors.py +21 -0
- labelarray/grouped.py +259 -0
- labelarray/index.py +470 -0
- labelarray/labels.py +244 -0
- labelarray/py.typed +0 -0
- labelarray/sums.py +317 -0
- labelarray/transforms.py +610 -0
- labelarray-0.1.0.dist-info/METADATA +187 -0
- labelarray-0.1.0.dist-info/RECORD +19 -0
- labelarray-0.1.0.dist-info/WHEEL +5 -0
- labelarray-0.1.0.dist-info/licenses/LICENSE +21 -0
- labelarray-0.1.0.dist-info/top_level.txt +1 -0
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Metadata-Version: 2.4
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Name: labelarray
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Version: 0.1.0
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Summary: Labelled N-D arrays in pure NumPy, with exact label semantics and reproducible reductions
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Author: Rigoberto Leyva Salmeron
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License-Expression: MIT
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Project-URL: Homepage, https://github.com/rleyvasal/labelarray
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Keywords: numpy,arrays,labelled arrays,named axes,xarray,reproducibility
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Classifier: Development Status :: 3 - Alpha
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Classifier: Intended Audience :: Science/Research
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Classifier: Programming Language :: Python :: 3
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Classifier: Topic :: Scientific/Engineering
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Requires-Python: >=3.11
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Description-Content-Type: text/markdown
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License-File: LICENSE
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Requires-Dist: numpy>=2.0
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Provides-Extra: xarray
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Requires-Dist: xarray>=2024.6; extra == "xarray"
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Requires-Dist: pandas>=2.2.2; extra == "xarray"
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Provides-Extra: fast
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Requires-Dist: numba>=0.60; extra == "fast"
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Provides-Extra: dev
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Requires-Dist: xarray>=2024.6; extra == "dev"
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Requires-Dist: pandas>=2.2.2; extra == "dev"
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Requires-Dist: numba>=0.60; extra == "dev"
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Requires-Dist: pytest>=7.0; extra == "dev"
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Dynamic: license-file
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# labelarray
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Labelled N-D arrays in pure NumPy, with exact label semantics and
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reproducible reductions. It needs NumPy only; xarray is used only to convert
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to and from xarray objects. It is the array layer of
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[tidy3a](https://github.com/rleyvasal/tidy3a), released on its own.
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It is deliberately small. What it offers that other array libraries do not:
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1. **Exact labels.** Labels match only when they are the same kind
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(booleans, numbers, times, durations, text, bytes) and exactly equal, in
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lookups, alignment, and joins. The integer `2**53 + 1` never matches the
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float `2**53`; pandas, and so xarray, pair labels through float64.
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2. **Reproducible reductions.** Float32 sums and means are correctly
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rounded: the float32 nearest the exact result, the same in any memory
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layout. Grouped reductions are bit-identical to reducing each group on
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its own.
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3. **Collections.** Arrays sharing axes, with one label array per axis,
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joined and aligned under those rules.
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**Status:** version `0.1.0`, the first release on its own; the API may still
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change before 1.0. What changed in each release is in
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[CHANGELOG.md](CHANGELOG.md).
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## Installing
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Requires Python 3.11 or newer.
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```bash
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pip install labelarray # NumPy only
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pip install "labelarray[xarray]" # with xarray: to_xarray() and from_xarray()
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pip install "labelarray[fast]" # with Numba: compiled grouped float32 sums and means
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```
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Results are the same with or without `fast`; it only makes large grouped
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sums and means faster.
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## Arrays
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An `Array` is a NumPy array with one name per axis, labels for any of its
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axes, attributes, and a name:
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```python
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import numpy as np
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from labelarray import Array
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air = Array(
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np.array([[271.0, 272.0, 273.0], [281.0, 282.0, 283.0]], dtype="float32"),
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dims=("lat", "time"),
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coords={"lat": [10.0, 20.0], "time": np.arange("2026-01-01", "2026-01-04", dtype="datetime64[D]")},
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attrs={"units": "K"},
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name="air",
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)
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print(air.sel(lat=20.0).data) # [281. 282. 283.]
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print(air.isel(time=[0, 2]).labels("time")) # ['2026-01-01' '2026-01-03']
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print(air.reduce("mean", ["time"]).data) # [272. 282.]
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```
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`isel` takes positions, slices, or masks; `sel` takes labels, looked up
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exactly; one label or position removes the axis, a list keeps it.
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`transpose`, `rename` (axes), `reduce` (sum, mean, min, max, median, std,
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var, any, all, count, with `na_rm` and `min_count`), and `dot` (the sum of
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products over named axes) complete the methods.
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NumPy's ufuncs, `np.where`, and Python's operators broadcast by axis name.
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Labels on a shared axis must match: the same labels in another order are
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matched by label, and anything else is an `AlignError`. There is no outer
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join by default; ask for one with `Collection.join`.
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```python
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import numpy as np
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from labelarray import Array
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a = Array([1.0, 2.0, 3.0], ("x",), {"x": [1, 2, 3]})
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b = Array([30.0, 10.0, 20.0], ("x",), {"x": [3, 1, 2]})
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print((a + b).data) # [11. 22. 33.]
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print(np.sqrt(a * 4).data) # [2. 2.82842712 3.46410162]
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```
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Labels are copied once into a read-only array the library owns, and each
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label array's index is built on first use and kept with it: a sorted index,
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a sort-once index for unsorted labels, or a grid index for evenly spaced
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numbers and times, which looks labels up arithmetically. `register_index`
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adds index classes for other label types, under the same exactness
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obligations.
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## Collections
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A `Collection` holds variables with different axes, each axis with one size
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and at most one label array:
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```python
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from labelarray import Array, Collection
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left = Collection({"a": Array([1.0, 2.0, 3.0], ("k",))}, {"k": [1, 3, 5]})
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right = Collection({"b": Array([10.0, 20.0], ("k",))}, {"k": [5, 1]})
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both = left.join(right, "inner")
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print(both.coords["k"]) # [1 5]
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print(both.array("b").data) # [20. 10.]
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print(left.join(right, "left").array("b").data) # [20. nan 10.]
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```
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`isel`, `sel`, `select` (variables), `assign`, `rename` (variables), `join`
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(left, inner, or outer), `nearest` (each label matched to its nearest within
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a tolerance), `to_dict`, `to_xarray`, and `from_xarray` are its methods.
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Missing positions after a join promote integers and booleans as xarray
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does, and attributes that conflict are dropped.
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## Grouping
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A `Grouping` assigns each position a group code; `factorize` makes one from
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key values, optionally after a key transform (`Bins`, `Duration`, `Round`,
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`GridCells`), with every missing key (NaN, NaT) one group, dropped unless
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asked for. `grouped.reduce` reduces every group at once:
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```python
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import numpy as np
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from labelarray import Array, Grouping, factorize, grouped
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intensity = Array(np.array([10, 20, 30, 40, 50], dtype="float32"), ("point",))
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codes, labels = factorize(np.array([0, 0, 1, 1, 2]))
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rings = Grouping(codes, labels)
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print(grouped.reduce(intensity, "mean", rings, "point", "ring").data) # [15. 35. 50.]
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print(grouped.counts(rings, "ring").data) # [2 2 1]
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```
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`grouped.broadcast` puts a result per group back on each position.
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## Errors
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Every error is a `LabelArrayError` (a `ValueError`): `LabelError` for labels
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that cannot be found, ordered, or compared; `AlignError` for axes that
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cannot be paired; `GroupError` for keys that cannot be grouped; and
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`ShapeError` for axis names, sizes, and ranks that do not fit.
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## Development
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From a checkout, install the development dependencies and run the tests:
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```bash
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python -m pip install -e ".[dev]"
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python -m pytest -q
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```
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xarray and pandas are test dependencies: the tests check the library against
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xarray and its label lookups against pandas. Before pushing, run the CI
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checks in fresh environments with only declared dependencies (requires
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[uv](https://docs.astral.sh/uv/)):
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```bash
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scripts/check.sh
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```
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The [release procedure](docs/releasing.md) describes the GitHub Release
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workflow.
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## License
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MIT
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labelarray/__init__.py,sha256=wzbqZlZjLGMrWrdmdceqHBGuEdYHUOd4iiod5ntuKFY,2311
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labelarray/__version__.py,sha256=kUR5RAFc7HCeiqdlX36dZOHkUI5wI6V_43RpEcD8b-0,22
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labelarray/_compiled.py,sha256=6DFveFFYoihzAT8P7-aLyZtrx0HJikvsb7sYXf7Nzvk,4592
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labelarray/align.py,sha256=EFgfCuGj5kpRXOhrhJjYB9b5Z93vSfkjAs6HDyA_cCE,1715
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labelarray/array.py,sha256=HJr3aWEWbkIFQFt70G0WkHysdYrireuOtUj628PKDLo,22052
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labelarray/collection.py,sha256=yc7fsT3UHJviq8sELzpAnxqv7_K7RCMfPT0tapkSPHM,13307
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labelarray/contract.py,sha256=JKvVzXo_xrZdO3dnn_s1EoyxBUZB5SSz_7yOahPNbG4,2706
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labelarray/errors.py,sha256=saQfw2361CttBnsi5xQXKPvri_m-8iXKJReyvaCOc-o,612
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labelarray/grouped.py,sha256=IaWEtACEg8fXkZSY-zm2fkwzJKOS1OivkBJS0txIgGA,13089
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labelarray/index.py,sha256=PZbICb7Sr8CJuiQh03-JeMpYSr0vi0Rr5mdvI6i1jkc,21902
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labelarray/labels.py,sha256=MRUWlIMz2FcPvr8Y2Mmbd5bLKpU6t2frrcGLVGQF1pM,9810
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labelarray/py.typed,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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labelarray/sums.py,sha256=9I0hpGDFkBTLpkWHy4A3WsE2bor38GV_ZmmLAPBAtO0,16250
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labelarray/transforms.py,sha256=AaE3cXoeNVg7oBfCpS1xRf6tkLnygAlbGYKRGkqS6zQ,28121
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labelarray-0.1.0.dist-info/licenses/LICENSE,sha256=sjpfmtLhkcM74AL9VMpifL0CRdeiMoLyUO9OKZ_hg9I,1082
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labelarray-0.1.0.dist-info/METADATA,sha256=sKG3e8GBCuiob_q-3ohd2P5VRUQB0F_CddmNNKrYa-A,6915
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labelarray-0.1.0.dist-info/WHEEL,sha256=mOdXR9C3wMVov7cSY8PY-XCzo3SmmWCHvGQr5csJoao,91
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labelarray-0.1.0.dist-info/top_level.txt,sha256=TUW9Diy4WR9SJn9-uvP4osLdZFrwXdYW3GB40EwdGL0,11
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labelarray-0.1.0.dist-info/RECORD,,
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MIT License
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Copyright (c) 2026 Rigoberto Leyva Salmeron
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Permission is hereby granted, free of charge, to any person obtaining a copy
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of this software and associated documentation files (the "Software"), to deal
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in the Software without restriction, including without limitation the rights
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to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
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copies of the Software, and to permit persons to whom the Software is
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furnished to do so, subject to the following conditions:
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The above copyright notice and this permission notice shall be included in all
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copies or substantial portions of the Software.
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THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
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FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
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AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
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OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
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SOFTWARE.
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labelarray
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