kumoai 2.13.0.dev202511211730__py3-none-any.whl → 2.15.0.dev202601131732__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (59) hide show
  1. kumoai/__init__.py +35 -26
  2. kumoai/_version.py +1 -1
  3. kumoai/client/client.py +6 -0
  4. kumoai/client/jobs.py +26 -0
  5. kumoai/client/pquery.py +6 -2
  6. kumoai/connector/utils.py +44 -9
  7. kumoai/experimental/rfm/__init__.py +70 -68
  8. kumoai/experimental/rfm/authenticate.py +3 -4
  9. kumoai/experimental/rfm/backend/__init__.py +0 -0
  10. kumoai/experimental/rfm/backend/local/__init__.py +42 -0
  11. kumoai/experimental/rfm/{local_graph_store.py → backend/local/graph_store.py} +65 -127
  12. kumoai/experimental/rfm/backend/local/sampler.py +312 -0
  13. kumoai/experimental/rfm/backend/local/table.py +113 -0
  14. kumoai/experimental/rfm/backend/snow/__init__.py +37 -0
  15. kumoai/experimental/rfm/backend/snow/sampler.py +407 -0
  16. kumoai/experimental/rfm/backend/snow/table.py +245 -0
  17. kumoai/experimental/rfm/backend/sqlite/__init__.py +32 -0
  18. kumoai/experimental/rfm/backend/sqlite/sampler.py +454 -0
  19. kumoai/experimental/rfm/backend/sqlite/table.py +184 -0
  20. kumoai/experimental/rfm/base/__init__.py +30 -0
  21. kumoai/experimental/rfm/base/column.py +152 -0
  22. kumoai/experimental/rfm/base/expression.py +44 -0
  23. kumoai/experimental/rfm/base/mapper.py +69 -0
  24. kumoai/experimental/rfm/base/sampler.py +783 -0
  25. kumoai/experimental/rfm/base/source.py +19 -0
  26. kumoai/experimental/rfm/base/sql_sampler.py +385 -0
  27. kumoai/experimental/rfm/base/table.py +722 -0
  28. kumoai/experimental/rfm/base/utils.py +36 -0
  29. kumoai/experimental/rfm/{local_graph.py → graph.py} +581 -154
  30. kumoai/experimental/rfm/infer/__init__.py +8 -0
  31. kumoai/experimental/rfm/infer/dtype.py +84 -0
  32. kumoai/experimental/rfm/infer/multicategorical.py +1 -1
  33. kumoai/experimental/rfm/infer/pkey.py +128 -0
  34. kumoai/experimental/rfm/infer/stype.py +35 -0
  35. kumoai/experimental/rfm/infer/time_col.py +63 -0
  36. kumoai/experimental/rfm/pquery/executor.py +27 -27
  37. kumoai/experimental/rfm/pquery/pandas_executor.py +30 -32
  38. kumoai/experimental/rfm/relbench.py +76 -0
  39. kumoai/experimental/rfm/rfm.py +783 -481
  40. kumoai/experimental/rfm/sagemaker.py +15 -7
  41. kumoai/experimental/rfm/task_table.py +292 -0
  42. kumoai/pquery/predictive_query.py +10 -6
  43. kumoai/pquery/training_table.py +16 -2
  44. kumoai/testing/decorators.py +1 -1
  45. kumoai/testing/snow.py +50 -0
  46. kumoai/trainer/distilled_trainer.py +175 -0
  47. kumoai/utils/__init__.py +3 -2
  48. kumoai/utils/display.py +87 -0
  49. kumoai/utils/progress_logger.py +192 -13
  50. kumoai/utils/sql.py +3 -0
  51. {kumoai-2.13.0.dev202511211730.dist-info → kumoai-2.15.0.dev202601131732.dist-info}/METADATA +10 -8
  52. {kumoai-2.13.0.dev202511211730.dist-info → kumoai-2.15.0.dev202601131732.dist-info}/RECORD +55 -30
  53. kumoai/experimental/rfm/local_graph_sampler.py +0 -182
  54. kumoai/experimental/rfm/local_pquery_driver.py +0 -689
  55. kumoai/experimental/rfm/local_table.py +0 -545
  56. kumoai/experimental/rfm/utils.py +0 -344
  57. {kumoai-2.13.0.dev202511211730.dist-info → kumoai-2.15.0.dev202601131732.dist-info}/WHEEL +0 -0
  58. {kumoai-2.13.0.dev202511211730.dist-info → kumoai-2.15.0.dev202601131732.dist-info}/licenses/LICENSE +0 -0
  59. {kumoai-2.13.0.dev202511211730.dist-info → kumoai-2.15.0.dev202601131732.dist-info}/top_level.txt +0 -0
@@ -0,0 +1,454 @@
1
+ import warnings
2
+ from collections import defaultdict
3
+ from typing import TYPE_CHECKING
4
+
5
+ import numpy as np
6
+ import pandas as pd
7
+ import pyarrow as pa
8
+ from kumoapi.pquery import ValidatedPredictiveQuery
9
+
10
+ from kumoai.experimental.rfm.backend.sqlite import SQLiteTable
11
+ from kumoai.experimental.rfm.base import SQLSampler, Table
12
+ from kumoai.experimental.rfm.pquery import PQueryPandasExecutor
13
+ from kumoai.utils import ProgressLogger, quote_ident
14
+
15
+ if TYPE_CHECKING:
16
+ from kumoai.experimental.rfm import Graph
17
+
18
+
19
+ class SQLiteSampler(SQLSampler):
20
+ def __init__(
21
+ self,
22
+ graph: 'Graph',
23
+ verbose: bool | ProgressLogger = True,
24
+ optimize: bool = False,
25
+ ) -> None:
26
+ super().__init__(graph=graph, verbose=verbose)
27
+
28
+ for table in graph.tables.values():
29
+ assert isinstance(table, SQLiteTable)
30
+ self._connection = table._connection
31
+
32
+ if optimize:
33
+ with self._connection.cursor() as cursor:
34
+ cursor.execute("PRAGMA temp_store = MEMORY")
35
+ cursor.execute("PRAGMA cache_size = -2000000") # 2 GB
36
+
37
+ # Collect database indices for speeding sampling:
38
+ index_dict: dict[str, set[tuple[str, ...]]] = defaultdict(set)
39
+ for table_name, primary_key in self.primary_key_dict.items():
40
+ source_table = self.source_table_dict[table_name]
41
+ if primary_key not in source_table:
42
+ continue # No physical column.
43
+ if source_table[primary_key].is_unique_key:
44
+ continue
45
+ index_dict[table_name].add((primary_key, ))
46
+ for src_table_name, foreign_key, _ in graph.edges:
47
+ source_table = self.source_table_dict[src_table_name]
48
+ if foreign_key not in source_table:
49
+ continue # No physical column.
50
+ if source_table[foreign_key].is_unique_key:
51
+ continue
52
+ time_column = self.time_column_dict.get(src_table_name)
53
+ if time_column is not None and time_column in source_table:
54
+ index_dict[src_table_name].add((foreign_key, time_column))
55
+ else:
56
+ index_dict[src_table_name].add((foreign_key, ))
57
+
58
+ # Only maintain missing indices:
59
+ with self._connection.cursor() as cursor:
60
+ for table_name in list(index_dict.keys()):
61
+ indices = index_dict[table_name]
62
+ source_name = self.source_name_dict[table_name]
63
+ sql = f"PRAGMA index_list({source_name})"
64
+ cursor.execute(sql)
65
+ for _, index_name, *_ in cursor.fetchall():
66
+ sql = f"PRAGMA index_info({quote_ident(index_name)})"
67
+ cursor.execute(sql)
68
+ # Fetch index information and sort by `seqno`:
69
+ index_info = tuple(info[2] for info in sorted(
70
+ cursor.fetchall(), key=lambda x: x[0]))
71
+ # Remove all indices in case primary index already exists:
72
+ for index in list(indices):
73
+ if index_info[0] == index[0]:
74
+ indices.discard(index)
75
+ if len(indices) == 0:
76
+ del index_dict[table_name]
77
+
78
+ if optimize and len(index_dict) > 0:
79
+ if not isinstance(verbose, ProgressLogger):
80
+ verbose = ProgressLogger.default(
81
+ msg="Optimizing SQLite database",
82
+ verbose=verbose,
83
+ )
84
+
85
+ with verbose as logger, self._connection.cursor() as cursor:
86
+ for table_name, indices in index_dict.items():
87
+ for index in indices:
88
+ name = f"kumo_index_{table_name}_{'_'.join(index)}"
89
+ name = quote_ident(name)
90
+ columns = ', '.join(quote_ident(v) for v in index)
91
+ columns += ' DESC' if len(index) > 1 else ''
92
+ source_name = self.source_name_dict[table_name]
93
+ sql = (f"CREATE INDEX IF NOT EXISTS {name}\n"
94
+ f"ON {source_name}({columns})")
95
+ cursor.execute(sql)
96
+ self._connection.commit()
97
+ if len(index) > 1:
98
+ logger.log(f"Created index on {index} in table "
99
+ f"'{table_name}'")
100
+ else:
101
+ logger.log(f"Created index on '{index[0]}' in "
102
+ f"table '{table_name}'")
103
+
104
+ elif len(index_dict) > 0:
105
+ num = sum(len(indices) for indices in index_dict.values())
106
+ index_repr = '1 index' if num == 1 else f'{num} indices'
107
+ num = len(index_dict)
108
+ table_repr = '1 table' if num == 1 else f'{num} tables'
109
+ warnings.warn(f"Missing {index_repr} in {table_repr} for optimal "
110
+ f"database querying. For improving runtime, we "
111
+ f"strongly suggest to create indices for primary "
112
+ f"and foreign keys, e.g., automatically by "
113
+ f"instantiating KumoRFM via "
114
+ f"`KumoRFM(graph, optimize=True)`.")
115
+
116
+ def _get_min_max_time_dict(
117
+ self,
118
+ table_names: list[str],
119
+ ) -> dict[str, tuple[pd.Timestamp, pd.Timestamp]]:
120
+ selects: list[str] = []
121
+ for table_name in table_names:
122
+ column = self.time_column_dict[table_name]
123
+ column_ref = self.table_column_ref_dict[table_name][column]
124
+ select = (f"SELECT\n"
125
+ f" ? as table_name,\n"
126
+ f" MIN({column_ref}) as min_date,\n"
127
+ f" MAX({column_ref}) as max_date\n"
128
+ f"FROM {self.source_name_dict[table_name]}")
129
+ selects.append(select)
130
+ sql = "\nUNION ALL\n".join(selects)
131
+
132
+ out_dict: dict[str, tuple[pd.Timestamp, pd.Timestamp]] = {}
133
+ with self._connection.cursor() as cursor:
134
+ cursor.execute(sql, table_names)
135
+ for table_name, _min, _max in cursor.fetchall():
136
+ out_dict[table_name] = (
137
+ pd.Timestamp.max if _min is None else pd.Timestamp(_min),
138
+ pd.Timestamp.min if _max is None else pd.Timestamp(_max),
139
+ )
140
+ return out_dict
141
+
142
+ def _sample_entity_table(
143
+ self,
144
+ table_name: str,
145
+ columns: set[str],
146
+ num_rows: int,
147
+ random_seed: int | None = None,
148
+ ) -> pd.DataFrame:
149
+ # NOTE SQLite does not natively support passing a `random_seed`.
150
+
151
+ source_table = self.source_table_dict[table_name]
152
+ filters: list[str] = []
153
+
154
+ key = self.primary_key_dict[table_name]
155
+ if key not in source_table or source_table[key].is_nullable:
156
+ key_ref = self.table_column_ref_dict[table_name][key]
157
+ filters.append(f" {key_ref} IS NOT NULL")
158
+
159
+ column = self.time_column_dict.get(table_name)
160
+ if column is None:
161
+ pass
162
+ elif column not in source_table or source_table[column].is_nullable:
163
+ column_ref = self.table_column_ref_dict[table_name][column]
164
+ filters.append(f" {column_ref} IS NOT NULL")
165
+
166
+ # TODO Make this query more efficient - it does full table scan.
167
+ projections = [
168
+ self.table_column_proj_dict[table_name][column]
169
+ for column in columns
170
+ ]
171
+ sql = (f"SELECT {', '.join(projections)}\n"
172
+ f"FROM {self.source_name_dict[table_name]}")
173
+ if len(filters) > 0:
174
+ sql += f"\nWHERE{' AND'.join(filters)}"
175
+ sql += f"\nORDER BY RANDOM() LIMIT {num_rows}"
176
+
177
+ with self._connection.cursor() as cursor:
178
+ # NOTE This may return duplicate primary keys. This is okay.
179
+ cursor.execute(sql)
180
+ table = cursor.fetch_arrow_table()
181
+
182
+ return Table._sanitize(
183
+ df=table.to_pandas(types_mapper=pd.ArrowDtype),
184
+ dtype_dict=self.table_dtype_dict[table_name],
185
+ stype_dict=self.table_stype_dict[table_name],
186
+ )
187
+
188
+ def _sample_target(
189
+ self,
190
+ query: ValidatedPredictiveQuery,
191
+ entity_df: pd.DataFrame,
192
+ train_index: np.ndarray,
193
+ train_time: pd.Series,
194
+ num_train_examples: int,
195
+ test_index: np.ndarray,
196
+ test_time: pd.Series,
197
+ num_test_examples: int,
198
+ columns_dict: dict[str, set[str]],
199
+ time_offset_dict: dict[
200
+ tuple[str, str, str],
201
+ tuple[pd.DateOffset | None, pd.DateOffset],
202
+ ],
203
+ ) -> tuple[pd.Series, np.ndarray, pd.Series, np.ndarray]:
204
+ train_y, train_mask = self._sample_target_set(
205
+ query=query,
206
+ entity_df=entity_df,
207
+ index=train_index,
208
+ anchor_time=train_time,
209
+ num_examples=num_train_examples,
210
+ columns_dict=columns_dict,
211
+ time_offset_dict=time_offset_dict,
212
+ )
213
+
214
+ test_y, test_mask = self._sample_target_set(
215
+ query=query,
216
+ entity_df=entity_df,
217
+ index=test_index,
218
+ anchor_time=test_time,
219
+ num_examples=num_test_examples,
220
+ columns_dict=columns_dict,
221
+ time_offset_dict=time_offset_dict,
222
+ )
223
+
224
+ return train_y, train_mask, test_y, test_mask
225
+
226
+ def _by_pkey(
227
+ self,
228
+ table_name: str,
229
+ index: pd.Series,
230
+ columns: set[str],
231
+ ) -> tuple[pd.DataFrame, np.ndarray]:
232
+ source_table = self.source_table_dict[table_name]
233
+ key = self.primary_key_dict[table_name]
234
+ key_ref = self.table_column_ref_dict[table_name][key]
235
+ projections = [
236
+ self.table_column_proj_dict[table_name][column]
237
+ for column in columns
238
+ ]
239
+
240
+ tmp = pa.table([pa.array(index)], names=['__kumo_id__'])
241
+ tmp_name = f'tmp_{table_name}_{key}_{id(tmp)}'
242
+
243
+ sql = (f"SELECT "
244
+ f"tmp.rowid - 1 as __kumo_batch__, "
245
+ f"{', '.join(projections)}\n"
246
+ f"FROM {quote_ident(tmp_name)} tmp\n"
247
+ f"JOIN {self.source_name_dict[table_name]} ent\n")
248
+ if key in source_table and source_table[key].is_unique_key:
249
+ sql += (f" ON {key_ref} = tmp.__kumo_id__")
250
+ else:
251
+ sql += (f" ON ent.rowid = (\n"
252
+ f" SELECT rowid\n"
253
+ f" FROM {self.source_name_dict[table_name]}\n"
254
+ f" WHERE {key_ref} == tmp.__kumo_id__\n"
255
+ f" LIMIT 1\n"
256
+ f")")
257
+
258
+ with self._connection.cursor() as cursor:
259
+ cursor.adbc_ingest(tmp_name, tmp, mode='replace')
260
+ cursor.execute(sql)
261
+ table = cursor.fetch_arrow_table()
262
+
263
+ batch = table['__kumo_batch__'].to_numpy()
264
+ batch_index = table.schema.get_field_index('__kumo_batch__')
265
+ table = table.remove_column(batch_index)
266
+
267
+ return Table._sanitize(
268
+ df=table.to_pandas(),
269
+ dtype_dict=self.table_dtype_dict[table_name],
270
+ stype_dict=self.table_stype_dict[table_name],
271
+ ), batch
272
+
273
+ def _by_fkey(
274
+ self,
275
+ table_name: str,
276
+ foreign_key: str,
277
+ index: pd.Series,
278
+ num_neighbors: int,
279
+ anchor_time: pd.Series | None,
280
+ columns: set[str],
281
+ ) -> tuple[pd.DataFrame, np.ndarray]:
282
+ time_column = self.time_column_dict.get(table_name)
283
+
284
+ # NOTE SQLite does not have a native datetime format. Currently, we
285
+ # assume timestamps are given as `TEXT` in `ISO-8601 UTC`:
286
+ tmp = pa.table([pa.array(index)], names=['__kumo_id__'])
287
+ if time_column is not None and anchor_time is not None:
288
+ anchor_time = anchor_time.dt.strftime("%Y-%m-%d %H:%M:%S")
289
+ tmp = tmp.append_column('__kumo_time__', pa.array(anchor_time))
290
+ tmp_name = f'tmp_{table_name}_{foreign_key}_{id(tmp)}'
291
+
292
+ key_ref = self.table_column_ref_dict[table_name][foreign_key]
293
+ projections = [
294
+ self.table_column_proj_dict[table_name][column]
295
+ for column in columns
296
+ ]
297
+ sql = (f"SELECT "
298
+ f"tmp.rowid - 1 as __kumo_batch__, "
299
+ f"{', '.join(projections)}\n"
300
+ f"FROM {quote_ident(tmp_name)} tmp\n"
301
+ f"JOIN {self.source_name_dict[table_name]} fact\n"
302
+ f"ON fact.rowid IN (\n"
303
+ f" SELECT rowid\n"
304
+ f" FROM {self.source_name_dict[table_name]}\n"
305
+ f" WHERE {key_ref} = tmp.__kumo_id__\n")
306
+ if time_column is not None and anchor_time is not None:
307
+ time_ref = self.table_column_ref_dict[table_name][time_column]
308
+ sql += f" AND {time_ref} <= tmp.__kumo_time__\n"
309
+ if time_column is not None:
310
+ time_ref = self.table_column_ref_dict[table_name][time_column]
311
+ sql += f" ORDER BY {time_ref} DESC\n"
312
+ sql += (f" LIMIT {num_neighbors}\n"
313
+ f")")
314
+
315
+ with self._connection.cursor() as cursor:
316
+ cursor.adbc_ingest(tmp_name, tmp, mode='replace')
317
+ cursor.execute(sql)
318
+ table = cursor.fetch_arrow_table()
319
+
320
+ batch = table['__kumo_batch__'].to_numpy()
321
+ batch_index = table.schema.get_field_index('__kumo_batch__')
322
+ table = table.remove_column(batch_index)
323
+
324
+ return Table._sanitize(
325
+ df=table.to_pandas(),
326
+ dtype_dict=self.table_dtype_dict[table_name],
327
+ stype_dict=self.table_stype_dict[table_name],
328
+ ), batch
329
+
330
+ # Helper Methods ##########################################################
331
+
332
+ def _by_time(
333
+ self,
334
+ table_name: str,
335
+ foreign_key: str,
336
+ index: pd.Series,
337
+ anchor_time: pd.Series,
338
+ min_offset: pd.DateOffset | None,
339
+ max_offset: pd.DateOffset,
340
+ columns: set[str],
341
+ ) -> tuple[pd.DataFrame, np.ndarray]:
342
+ time_column = self.time_column_dict[table_name]
343
+
344
+ # NOTE SQLite does not have a native datetime format. Currently, we
345
+ # assume timestamps are given as `TEXT` in `ISO-8601 UTC`:
346
+ tmp = pa.table([pa.array(index)], names=['__kumo_id__'])
347
+ end_time = anchor_time + max_offset
348
+ end_time = end_time.dt.strftime("%Y-%m-%d %H:%M:%S")
349
+ tmp = tmp.append_column('__kumo_end__', pa.array(end_time))
350
+ if min_offset is not None:
351
+ start_time = anchor_time + min_offset
352
+ start_time = start_time.dt.strftime("%Y-%m-%d %H:%M:%S")
353
+ tmp = tmp.append_column('__kumo_start__', pa.array(start_time))
354
+ tmp_name = f'tmp_{table_name}_{foreign_key}_{id(tmp)}'
355
+
356
+ key_ref = self.table_column_ref_dict[table_name][foreign_key]
357
+ time_ref = self.table_column_ref_dict[table_name][time_column]
358
+ projections = [
359
+ self.table_column_proj_dict[table_name][column]
360
+ for column in columns
361
+ ]
362
+ sql = (f"SELECT "
363
+ f"tmp.rowid - 1 as __kumo_batch__, "
364
+ f"{', '.join(projections)}\n"
365
+ f"FROM {quote_ident(tmp_name)} tmp\n"
366
+ f"JOIN {self.source_name_dict[table_name]}\n"
367
+ f" ON {key_ref} = tmp.__kumo_id__\n"
368
+ f" AND {time_ref} <= tmp.__kumo_end__")
369
+ if min_offset is not None:
370
+ sql += f"\n AND {time_ref} > tmp.__kumo_start__"
371
+
372
+ with self._connection.cursor() as cursor:
373
+ cursor.adbc_ingest(tmp_name, tmp, mode='replace')
374
+ cursor.execute(sql)
375
+ table = cursor.fetch_arrow_table()
376
+
377
+ batch = table['__kumo_batch__'].to_numpy()
378
+ batch_index = table.schema.get_field_index('__kumo_batch__')
379
+ table = table.remove_column(batch_index)
380
+
381
+ return Table._sanitize(
382
+ df=table.to_pandas(types_mapper=pd.ArrowDtype),
383
+ dtype_dict=self.table_dtype_dict[table_name],
384
+ stype_dict=self.table_stype_dict[table_name],
385
+ ), batch
386
+
387
+ def _sample_target_set(
388
+ self,
389
+ query: ValidatedPredictiveQuery,
390
+ entity_df: pd.DataFrame,
391
+ index: np.ndarray,
392
+ anchor_time: pd.Series,
393
+ num_examples: int,
394
+ columns_dict: dict[str, set[str]],
395
+ time_offset_dict: dict[
396
+ tuple[str, str, str],
397
+ tuple[pd.DateOffset | None, pd.DateOffset],
398
+ ],
399
+ batch_size: int = 10_000,
400
+ ) -> tuple[pd.Series, np.ndarray]:
401
+
402
+ count = 0
403
+ ys: list[pd.Series] = []
404
+ mask = np.full(len(index), False, dtype=bool)
405
+ for start in range(0, len(index), batch_size):
406
+ df = entity_df.iloc[index[start:start + batch_size]]
407
+ time = anchor_time.iloc[start:start + batch_size]
408
+
409
+ feat_dict: dict[str, pd.DataFrame] = {query.entity_table: df}
410
+ time_dict: dict[str, pd.Series] = {}
411
+ time_column = self.time_column_dict.get(query.entity_table)
412
+ if time_column in columns_dict[query.entity_table]:
413
+ time_dict[query.entity_table] = df[time_column]
414
+ batch_dict: dict[str, np.ndarray] = {
415
+ query.entity_table: np.arange(len(df)),
416
+ }
417
+ for edge_type, (_min, _max) in time_offset_dict.items():
418
+ table_name, foreign_key, _ = edge_type
419
+ feat_dict[table_name], batch_dict[table_name] = self._by_time(
420
+ table_name=table_name,
421
+ foreign_key=foreign_key,
422
+ index=df[self.primary_key_dict[query.entity_table]],
423
+ anchor_time=time,
424
+ min_offset=_min,
425
+ max_offset=_max,
426
+ columns=columns_dict[table_name],
427
+ )
428
+ time_column = self.time_column_dict.get(table_name)
429
+ if time_column in columns_dict[table_name]:
430
+ time_dict[table_name] = feat_dict[table_name][time_column]
431
+
432
+ y, _mask = PQueryPandasExecutor().execute(
433
+ query=query,
434
+ feat_dict=feat_dict,
435
+ time_dict=time_dict,
436
+ batch_dict=batch_dict,
437
+ anchor_time=time,
438
+ num_forecasts=query.num_forecasts,
439
+ )
440
+ ys.append(y)
441
+ mask[start:start + batch_size] = _mask
442
+
443
+ count += len(y)
444
+ if count >= num_examples:
445
+ break
446
+
447
+ if len(ys) == 0:
448
+ y = pd.Series([], dtype=float)
449
+ elif len(ys) == 1:
450
+ y = ys[0]
451
+ else:
452
+ y = pd.concat(ys, axis=0, ignore_index=True)
453
+
454
+ return y, mask
@@ -0,0 +1,184 @@
1
+ import re
2
+ from collections import Counter
3
+ from collections.abc import Sequence
4
+ from typing import cast
5
+
6
+ import pandas as pd
7
+ from kumoapi.model_plan import MissingType
8
+ from kumoapi.typing import Dtype
9
+
10
+ from kumoai.experimental.rfm.backend.sqlite import Connection
11
+ from kumoai.experimental.rfm.base import (
12
+ ColumnSpec,
13
+ ColumnSpecType,
14
+ DataBackend,
15
+ SourceColumn,
16
+ SourceForeignKey,
17
+ Table,
18
+ )
19
+ from kumoai.utils import quote_ident
20
+
21
+
22
+ class SQLiteTable(Table):
23
+ r"""A table backed by a :class:`sqlite` database.
24
+
25
+ Args:
26
+ connection: The connection to a :class:`sqlite` database.
27
+ name: The name of this table.
28
+ source_name: The source name of this table. If set to ``None``,
29
+ ``name`` is being used.
30
+ columns: The selected columns of this table.
31
+ primary_key: The name of the primary key of this table, if it exists.
32
+ time_column: The name of the time column of this table, if it exists.
33
+ end_time_column: The name of the end time column of this table, if it
34
+ exists.
35
+ """
36
+ def __init__(
37
+ self,
38
+ connection: Connection,
39
+ name: str,
40
+ source_name: str | None = None,
41
+ columns: Sequence[ColumnSpecType] | None = None,
42
+ primary_key: MissingType | str | None = MissingType.VALUE,
43
+ time_column: str | None = None,
44
+ end_time_column: str | None = None,
45
+ ) -> None:
46
+
47
+ self._connection = connection
48
+
49
+ super().__init__(
50
+ name=name,
51
+ source_name=source_name,
52
+ columns=columns,
53
+ primary_key=primary_key,
54
+ time_column=time_column,
55
+ end_time_column=end_time_column,
56
+ )
57
+
58
+ @property
59
+ def backend(self) -> DataBackend:
60
+ return cast(DataBackend, DataBackend.SQLITE)
61
+
62
+ def _get_source_columns(self) -> list[SourceColumn]:
63
+ source_columns: list[SourceColumn] = []
64
+ with self._connection.cursor() as cursor:
65
+ sql = f"PRAGMA table_info({self._quoted_source_name})"
66
+ cursor.execute(sql)
67
+ columns = cursor.fetchall()
68
+
69
+ if len(columns) == 0:
70
+ raise ValueError(f"Table '{self.source_name}' does not exist "
71
+ f"in the SQLite database")
72
+
73
+ unique_keys: set[str] = set()
74
+ sql = f"PRAGMA index_list({self._quoted_source_name})"
75
+ cursor.execute(sql)
76
+ for _, index_name, is_unique, *_ in cursor.fetchall():
77
+ if bool(is_unique):
78
+ sql = f"PRAGMA index_info({quote_ident(index_name)})"
79
+ cursor.execute(sql)
80
+ index = cursor.fetchall()
81
+ if len(index) == 1:
82
+ unique_keys.add(index[0][2])
83
+
84
+ # Special SQLite case that creates a rowid alias for
85
+ # `INTEGER PRIMARY KEY` annotated columns:
86
+ rowid_candidates = [
87
+ column for _, column, dtype, _, _, is_pkey in columns
88
+ if bool(is_pkey) and dtype.strip().upper() == 'INTEGER'
89
+ ]
90
+ if len(rowid_candidates) == 1:
91
+ unique_keys.add(rowid_candidates[0])
92
+
93
+ for _, column, dtype, notnull, _, is_pkey in columns:
94
+ source_column = SourceColumn(
95
+ name=column,
96
+ dtype=self._to_dtype(dtype),
97
+ is_primary_key=bool(is_pkey),
98
+ is_unique_key=column in unique_keys,
99
+ is_nullable=not bool(is_pkey) and not bool(notnull),
100
+ )
101
+ source_columns.append(source_column)
102
+
103
+ return source_columns
104
+
105
+ def _get_source_foreign_keys(self) -> list[SourceForeignKey]:
106
+ source_foreign_keys: list[SourceForeignKey] = []
107
+ with self._connection.cursor() as cursor:
108
+ sql = f"PRAGMA foreign_key_list({self._quoted_source_name})"
109
+ cursor.execute(sql)
110
+ rows = cursor.fetchall()
111
+ counts = Counter(row[0] for row in rows)
112
+ for idx, _, dst_table, foreign_key, primary_key, *_ in rows:
113
+ if counts[idx] == 1:
114
+ source_foreign_key = SourceForeignKey(
115
+ name=foreign_key,
116
+ dst_table=dst_table,
117
+ primary_key=primary_key,
118
+ )
119
+ source_foreign_keys.append(source_foreign_key)
120
+ return source_foreign_keys
121
+
122
+ def _get_source_sample_df(self) -> pd.DataFrame:
123
+ with self._connection.cursor() as cursor:
124
+ columns = [quote_ident(col) for col in self._source_column_dict]
125
+ sql = (f"SELECT {', '.join(columns)} "
126
+ f"FROM {self._quoted_source_name} "
127
+ f"ORDER BY rowid "
128
+ f"LIMIT {self._NUM_SAMPLE_ROWS}")
129
+ cursor.execute(sql)
130
+ table = cursor.fetch_arrow_table()
131
+
132
+ if len(table) == 0:
133
+ raise RuntimeError(f"Table '{self.source_name}' is empty")
134
+
135
+ return self._sanitize(
136
+ df=table.to_pandas(types_mapper=pd.ArrowDtype),
137
+ dtype_dict={
138
+ column.name: column.dtype
139
+ for column in self._source_column_dict.values()
140
+ },
141
+ stype_dict=None,
142
+ )
143
+
144
+ def _get_num_rows(self) -> int | None:
145
+ return None
146
+
147
+ def _get_expr_sample_df(
148
+ self,
149
+ columns: Sequence[ColumnSpec],
150
+ ) -> pd.DataFrame:
151
+ with self._connection.cursor() as cursor:
152
+ projections = [
153
+ f"{column.expr} AS {quote_ident(column.name)}"
154
+ for column in columns
155
+ ]
156
+ sql = (f"SELECT {', '.join(projections)} "
157
+ f"FROM {self._quoted_source_name} "
158
+ f"ORDER BY rowid "
159
+ f"LIMIT {self._NUM_SAMPLE_ROWS}")
160
+ cursor.execute(sql)
161
+ table = cursor.fetch_arrow_table()
162
+
163
+ if len(table) == 0:
164
+ raise RuntimeError(f"Table '{self.source_name}' is empty")
165
+
166
+ return self._sanitize(
167
+ df=table.to_pandas(types_mapper=pd.ArrowDtype),
168
+ dtype_dict={column.name: column.dtype
169
+ for column in columns},
170
+ stype_dict=None,
171
+ )
172
+
173
+ @staticmethod
174
+ def _to_dtype(dtype: str | None) -> Dtype | None:
175
+ if dtype is None:
176
+ return None
177
+ dtype = dtype.strip().upper()
178
+ if re.search('INT', dtype):
179
+ return Dtype.int
180
+ if re.search('TEXT|CHAR|CLOB', dtype):
181
+ return Dtype.string
182
+ if re.search('REAL|FLOA|DOUB', dtype):
183
+ return Dtype.float
184
+ return None # NUMERIC affinity.
@@ -0,0 +1,30 @@
1
+ from kumoapi.common import StrEnum
2
+
3
+
4
+ class DataBackend(StrEnum):
5
+ LOCAL = 'local'
6
+ SQLITE = 'sqlite'
7
+ SNOWFLAKE = 'snowflake'
8
+
9
+
10
+ from .source import SourceColumn, SourceForeignKey # noqa: E402
11
+ from .expression import Expression, LocalExpression # noqa: E402
12
+ from .column import ColumnSpec, ColumnSpecType, Column # noqa: E402
13
+ from .table import Table # noqa: E402
14
+ from .sampler import SamplerOutput, Sampler # noqa: E402
15
+ from .sql_sampler import SQLSampler # noqa: E402
16
+
17
+ __all__ = [
18
+ 'DataBackend',
19
+ 'SourceColumn',
20
+ 'SourceForeignKey',
21
+ 'Expression',
22
+ 'LocalExpression',
23
+ 'ColumnSpec',
24
+ 'ColumnSpecType',
25
+ 'Column',
26
+ 'Table',
27
+ 'SamplerOutput',
28
+ 'Sampler',
29
+ 'SQLSampler',
30
+ ]