konfai 1.0.4__py3-none-any.whl → 1.0.6__py3-none-any.whl

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Files changed (14) hide show
  1. konfai/data/augmentation.py +1 -1
  2. konfai/data/transform.py +1 -1
  3. konfai/evaluator.py +3 -5
  4. konfai/metric/measure.py +1 -1
  5. konfai/network/network.py +1 -1
  6. konfai/predictor.py +1 -1
  7. konfai/utils/utils.py +1 -1
  8. {konfai-1.0.4.dist-info → konfai-1.0.6.dist-info}/METADATA +26 -4
  9. {konfai-1.0.4.dist-info → konfai-1.0.6.dist-info}/RECORD +14 -14
  10. /konfai/utils/{Registration.py → registration.py} +0 -0
  11. {konfai-1.0.4.dist-info → konfai-1.0.6.dist-info}/WHEEL +0 -0
  12. {konfai-1.0.4.dist-info → konfai-1.0.6.dist-info}/entry_points.txt +0 -0
  13. {konfai-1.0.4.dist-info → konfai-1.0.6.dist-info}/licenses/LICENSE +0 -0
  14. {konfai-1.0.4.dist-info → konfai-1.0.6.dist-info}/top_level.txt +0 -0
konfai/data/augmentation.py CHANGED
@@ -58,7 +58,7 @@ class DataAugmentationsList():
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  def load(self, key: str):
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  for augmentation, prob in self.dataAugmentationsLoader.items():
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- module, name = _getModule(augmentation, "augmentation")
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+ module, name = _getModule(augmentation, "data.augmentation")
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  dataAugmentation: DataAugmentation = getattr(importlib.import_module(module), name)(config = None, DL_args="{}.Dataset.augmentations.{}.dataAugmentations".format(DEEP_LEARNING_API_ROOT(), key))
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  dataAugmentation.load(prob.prob)
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  self.dataAugmentations.append(dataAugmentation)
konfai/data/transform.py CHANGED
@@ -36,7 +36,7 @@ class TransformLoader:
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  pass
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  def getTransform(self, classpath : str, DL_args : str) -> Transform:
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- module, name = _getModule(classpath, "transform")
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+ module, name = _getModule(classpath, "data.transform")
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  return config("{}.{}".format(DL_args, classpath))(getattr(importlib.import_module(module), name))(config = None)
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  class Clip(Transform):
konfai/evaluator.py CHANGED
@@ -27,7 +27,7 @@ class CriterionsLoader():
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  def getCriterions(self, output_group : str, target_group : str) -> dict[torch.nn.Module, CriterionsAttr]:
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  criterions = {}
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  for module_classpath, criterionsAttr in self.criterionsLoader.items():
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- module, name = _getModule(module_classpath, "measure")
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+ module, name = _getModule(module_classpath, "metric.measure")
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  criterions[config("{}.metrics.{}.targetsCriterions.{}.criterionsLoader.{}".format(DEEP_LEARNING_API_ROOT(), output_group, target_group, module_classpath))(getattr(importlib.import_module(module), name))(config = None)] = criterionsAttr
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  return criterions
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@@ -90,7 +90,7 @@ class Evaluator(DistributedObject):
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  if os.environ["DEEP_LEANING_API_CONFIG_MODE"] != "Done":
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  exit(0)
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  super().__init__(train_name)
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- self.metric_path = METRICS_DIRECTORY()+self.name+"/"
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+ self.metric_path = EVALUATIONS_DIRECTORY()+self.name+"/"
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  self.predict_path = PREDICTIONS_DIRECTORY()+self.name+"/"
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  self.metricsLoader = metrics
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  self.dataset = dataset
@@ -141,6 +141,4 @@ class Evaluator(DistributedObject):
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  batch_iter.set_description(description(self.update({k: (v[0], v[4]) for k,v in data_dict.items()}, self.statistics_validation)))
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  outputs = synchronize_data(world_size, gpu, self.statistics_validation.measures)
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  if global_rank == 0:
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- self.statistics_validation.write(outputs)
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-
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- # 69.8936 ± 13.2773 (107) 28.6021 (117) 0.8641 (118)
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+ self.statistics_validation.write(outputs)
konfai/metric/measure.py CHANGED
@@ -244,7 +244,7 @@ class PerceptualLoss(Criterion):
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  def getLoss(self) -> dict[torch.nn.Module, float]:
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  result: dict[torch.nn.Module, float] = {}
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  for loss, l in self.losses.items():
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- module, name = _getModule(loss, "measure")
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+ module, name = _getModule(loss, "metric.measure")
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  result[config(self.DL_args)(getattr(importlib.import_module(module), name))(config=None)] = l
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  return result
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konfai/network/network.py CHANGED
@@ -96,7 +96,7 @@ class CriterionsLoader():
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  def getCriterions(self, model_classname : str, output_group : str, target_group : str) -> dict[torch.nn.Module, CriterionsAttr]:
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  criterions = {}
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  for module_classpath, criterionsAttr in self.criterionsLoader.items():
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- module, name = _getModule(module_classpath, "measure")
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+ module, name = _getModule(module_classpath, "metric.measure")
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  criterionsAttr.isTorchCriterion = module.startswith("torch")
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  criterionsAttr.sheduler = criterionsAttr.l.getShedulers("{}.Model.{}.outputsCriterions.{}.targetsCriterions.{}.criterionsLoader.{}".format(DEEP_LEARNING_API_ROOT(), model_classname, output_group, target_group, module_classpath))
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  criterions[config("{}.Model.{}.outputsCriterions.{}.targetsCriterions.{}.criterionsLoader.{}".format(DEEP_LEARNING_API_ROOT(), model_classname, output_group, target_group, module_classpath))(getattr(importlib.import_module(module), name))(config = None)] = criterionsAttr
konfai/predictor.py CHANGED
@@ -55,7 +55,7 @@ class OutDataset(Dataset, NeedDevice, ABC):
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  transform_type.append(transform)
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  if self._patchCombine is not None:
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- module, name = _getModule(self._patchCombine, "HDF5")
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+ module, name = _getModule(self._patchCombine, "data.HDF5")
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  self.patchCombine = getattr(importlib.import_module(module), name)(config = None, DL_args = "{}.outsDataset.{}.OutDataset".format(DEEP_LEARNING_API_ROOT(), name_layer))
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  def setPatchConfig(self, patchSize: Union[list[int], None], overlap: Union[int, None], nb_data_augmentation: int) -> None:
konfai/utils/utils.py CHANGED
@@ -35,7 +35,7 @@ def _getModule(classpath : str, type : str) -> tuple[str, str]:
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  module = ".".join(classpath.split("_")[:-1])
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  name = classpath.split("_")[-1]
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  else:
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- module = ""+type
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+ module = "konfai."+type
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  name = classpath
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  return module, name
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{konfai-1.0.4.dist-info → konfai-1.0.6.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: konfai
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- Version: 1.0.4
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+ Version: 1.0.6
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  Summary: Modular and configurable Deep Learning framework with YAML and PyTorch
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  Author-email: Valentin Boussot <boussot.v@gmail.com>
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  License-Expression: Apache-2.0
@@ -33,7 +33,7 @@ Dynamic: license-file
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  # 🧠 KonfAI
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- <img src="logo.png" alt="KonfAI Logo" width="200" align="right"/>
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+ <img src="https://raw.githubusercontent.com/vboussot/KonfAI/main/logo.png" alt="KonfAI Logo" width="200" align="right"/>
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  **KonfAI** is a modular and highly configurable deep learning framework built on PyTorch, driven entirely by YAML configuration files.
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@@ -54,8 +54,30 @@ It is designed to support complex medical imaging workflows, flexible model arch
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  ## 🚀 Installation
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- ```bash
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- git clone https://github.com/vboussot/KonfAI.git && cd KonfAI
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+ ### From PyPI (recommended)
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+
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+ Install KonfAI from PyPI:
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+
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+ ```
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+ pip install konfai
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+ ```
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+
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+ This will install the command-line tools:
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+
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+ ```
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+ konfai --help
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+ konfai-cluster --help
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+ ```
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+
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+ ---
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+
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+ ### From GitHub
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+
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+ Clone the repository and install:
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+
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+ ```
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+ git clone https://github.com/vboussot/KonfAI.git
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+ cd KonfAI
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  pip install -e .
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  ```
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{konfai-1.0.4.dist-info → konfai-1.0.6.dist-info}/RECORD RENAMED
@@ -1,15 +1,15 @@
1
1
  konfai/__init__.py,sha256=jXMTNml38eX6FSq9d3C_gJVgRLTKHPBUXqOLC7Pqkuo,828
2
- konfai/evaluator.py,sha256=emXNtEdKNf_YoJ-mkvdAuIwiwL6n5OvkWKAJmV6oMGc,7440
2
+ konfai/evaluator.py,sha256=WLJ_hEwY2smB6F2KBLCVH_j13WVe3biuETSg2_NTXdk,7396
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  konfai/main.py,sha256=voh5P5UUY0vjBOsd79O23cVK2LR8WH4c_8ep-kI967E,2149
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- konfai/predictor.py,sha256=Xmx8TSrYGPYkUjo82n-_7g5oznVzOv26tuytpeyYdtI,20173
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+ konfai/predictor.py,sha256=-CtMHDaZgnCSz-eKC3MG5_y7CWQI89afWpr7i897RVI,20178
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  konfai/trainer.py,sha256=x4Sni2JBOPgcSnpRwHHIQFB7cc0-cZ4L8X9pwZQt0qs,16866
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  konfai/data/HDF5.py,sha256=Amexa4zMfsamo0odxHgKBwWlR7WquhGnAmFFVETcpQw,14355
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  konfai/data/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
8
- konfai/data/augmentation.py,sha256=UA-Kpg9luU2CJPTW2Cjqry_AYpMxAdeXKgPIX8a1oSI,31729
8
+ konfai/data/augmentation.py,sha256=-1KYIVE_CuFwGg-AA5M9g5rDpkhwUWczfZA8JVhxNM4,31734
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  konfai/data/dataset.py,sha256=azYz6yiwMHNaXlmXRY05PBHHcmrYjnpbXo0jcyachRk,23914
10
- konfai/data/transform.py,sha256=aiNMd_nGGwQreH6A7h1OcVJGlGHSkKb8Y0I0YoQVSuY,25150
10
+ konfai/data/transform.py,sha256=AI2k0e_ocphxccOyaHUhKtA9-E5B5SwZ0Du-C1mfG84,25155
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  konfai/metric/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
12
- konfai/metric/measure.py,sha256=68tuBL6XteJTuQ4KgBBg3mTbNFdK9gfYHCyyqYfYW1c,21805
12
+ konfai/metric/measure.py,sha256=VN4SF1b8WHWckAsoObWKMfTOnOGf9Zm3DKyrK-bkNwg,21812
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  konfai/metric/schedulers.py,sha256=UoSr1TW_hrus3DhvOEbDefxCSUGz7lJS_8vbz0GEye8,1370
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  konfai/models/classification/convNeXt.py,sha256=TucP-EsQ4wlUX2MvbGYwOwUySJlo9Ljg65n3n-yivS0,9239
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  konfai/models/classification/resnet.py,sha256=4EtjXBYLOjE89ywjoPkSR1MflpeMTG2dth1jvw6-lAw,7954
@@ -24,16 +24,16 @@ konfai/models/segmentation/NestedUNet.py,sha256=GnAwQYHzivHN1qouifJyneh9nOFHSloG
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  konfai/models/segmentation/UNet.py,sha256=Icd_YddkHpExRxyvhoBTsd4McVkaBOF4Y3L_NrNA6Gs,4214
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  konfai/network/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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  konfai/network/blocks.py,sha256=EN1JN929zzV0FfecgFnVvv8u-WwENFRxloOpfCBkqeU,13529
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- konfai/network/network.py,sha256=VIFgZPsUUzpY07uuni84LQ-fGfODc06TsdaWVTpmxGo,45768
27
+ konfai/network/network.py,sha256=7JL7gtWB8vk8wHaQsritaVGDN_fjrmDNkHfIkqJtLSE,45775
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  konfai/utils/ITK.py,sha256=OxTieDNNYHGkn7zxJsAG-6ecRG1VYMvn1dlBbBe1DOs,13955
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- konfai/utils/Registration.py,sha256=v1srEBOcgDnHrx0YtsK6bcj0yCMH7wNeaQ3wC7gEvOw,8898
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  konfai/utils/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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  konfai/utils/config.py,sha256=tzIkNUA88EXGpkH-GUFA-BehxC47wAuDbu0M0kWfUIY,9887
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  konfai/utils/dataset.py,sha256=DTAt8AEsAkDWM8ZtiXPUQfS5DQBqdYmXuw2sjOTIYV4,35517
33
- konfai/utils/utils.py,sha256=i7bfAMuIjaafy8wMFFgZQWHPJDkpXN61f_mNd4F29Kw,20179
34
- konfai-1.0.4.dist-info/licenses/LICENSE,sha256=xx0jnfkXJvxRnG63LTGOxlggYnIysveWIZ6H3PNdCrQ,11357
35
- konfai-1.0.4.dist-info/METADATA,sha256=jnUYKDmbnKUFJ9cyIlCz5HNuGsurJrKXNtDFPbilEzw,2035
36
- konfai-1.0.4.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
37
- konfai-1.0.4.dist-info/entry_points.txt,sha256=fG82HRN5-g39ACSOCtij_I3N6EHxfYnMR0D7TI_8pW8,81
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- konfai-1.0.4.dist-info/top_level.txt,sha256=xF470dkIlFoFqTZEOlRehKJr4WU_8OKGXrJqYm9vWKs,7
39
- konfai-1.0.4.dist-info/RECORD,,
32
+ konfai/utils/registration.py,sha256=v1srEBOcgDnHrx0YtsK6bcj0yCMH7wNeaQ3wC7gEvOw,8898
33
+ konfai/utils/utils.py,sha256=hRxqq1cOXewFG417kYQZUGzKqaCK14GNQqjFdRBIVGs,20186
34
+ konfai-1.0.6.dist-info/licenses/LICENSE,sha256=xx0jnfkXJvxRnG63LTGOxlggYnIysveWIZ6H3PNdCrQ,11357
35
+ konfai-1.0.6.dist-info/METADATA,sha256=le1r8uFUsi1q5S2NlQQ0oXKtgrnRl-XYX0KnVanFWWw,2312
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+ konfai-1.0.6.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
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+ konfai-1.0.6.dist-info/entry_points.txt,sha256=fG82HRN5-g39ACSOCtij_I3N6EHxfYnMR0D7TI_8pW8,81
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+ konfai-1.0.6.dist-info/top_level.txt,sha256=xF470dkIlFoFqTZEOlRehKJr4WU_8OKGXrJqYm9vWKs,7
39
+ konfai-1.0.6.dist-info/RECORD,,
/konfai/utils/{Registration.py → registration.py} RENAMED
File without changes
{konfai-1.0.4.dist-info → konfai-1.0.6.dist-info}/WHEEL RENAMED
File without changes