kitikiplot 0.2.5__py3-none-any.whl → 0.2.7__py3-none-any.whl

kitikiplot/core/kitiki_cell.py

@@ -3,7 +3,7 @@ File Name: kitiki_cell.py
 Description: This file defines the 'KitikiCell' class for each rectangular cell in KitikiPlot
 Author: Boddu Sri Pavan
 Date Created: 21-10-2024
-Last Modified: 19-02-2025
+Last Modified: 31-05-2025
 """
 
 # Import necessary libraries
@@ -79,6 +79,8 @@ class KitikiCell(ColorConfig):
                 fallback_hatch: str,
                 display_hatch: bool,
                 transpose: bool,
+                focus,
+                focus_alpha,
                 **kitiki_cell_kwargs: dict) -> mpatches.Rectangle:
         
         """
@@ -143,7 +145,26 @@ class KitikiCell(ColorConfig):
             align_factor= (self.rows-x)*self.stride*cell_height if align else 0
 
             # Calculate dimensions for the rectangle based on grid position and size parameters
-            rect_dim= (window_gap*(x+1)+ cell_width*(x+1) , cell_height*(self.cols-y-1)+align_factor)
+            dim_x= window_gap*(x+1)+ cell_width*(x+1)
+            dim_y= cell_height*(self.cols-y-1)+align_factor
+
+            if focus == None:   
+                rect_dim= ( dim_x, dim_y )
+
+            else:
+
+                align_factor= (self.rows)*self.stride*cell_height
+                focus_dim_y= cell_height*(self.cols-y-1)+align_factor
+
+                # Calculate dimensions for the rectangle based on grid position and size parameters
+                rect_dim= ( dim_x, focus_dim_y )
+
+                max_y= cell_height*(self.cols-1)+ ((self.rows)*self.stride*cell_height)
+
+                if (focus_dim_y > max_y - (cell_height*self.window_length + cell_height*x*self.stride)) and  (focus_dim_y <= max_y - (cell_height*x*self.stride)):
+                    kitiki_cell_kwargs["alpha"]= 1
+                else:
+                    kitiki_cell_kwargs["alpha"]= focus_alpha
 
         # Adjust dimensions if 'transpose' is set to 'True'
         else:
@@ -155,7 +176,10 @@ class KitikiCell(ColorConfig):
             align_factor= x*self.stride*cell_height if align else 0
 
             # Calculate dimensions for the rectangle based on grid position and size parameters for transposed layout
-            rect_dim= (cell_height*(y+1)+ align_factor, window_gap*(self.rows- x+1)+ cell_width*(self.rows- x+1))
+            dim_x= cell_height*(y+1)+ align_factor
+            dim_y= window_gap*(self.rows- x+1)+ cell_width*(self.rows- x+1)
+
+            rect_dim= (dim_x, dim_y)
 
 
         # Clean up all local variables for efficient memory management

kitikiplot/core/kitiki_color_config.py

@@ -94,14 +94,10 @@ class ColorConfig:
             # Convert 'list' to 'pd.DataFrame' using stride and window_length, and initialize 'data' attribute
             self.data= self._convert_list_to_dataframe( list(data), stride, window_length)
 
-        # Store the stride value
-        self.stride= stride
-
-        # Set 'rows' to number of rows in the DataFrame
         self.rows= self.data.shape[0]
-
-        # Set 'cols' to number of columns in the DataFrame
         self.cols= self.data.shape[1]
+        self.stride= stride
+        self.window_length= window_length
 
     @staticmethod
     def _convert_list_to_dataframe( data: Union[pd.DataFrame, list], stride: int = 1, window_length: int = 10) -> pd.DataFrame:

kitikiplot/core/kitikiplot.py

@@ -8,6 +8,7 @@ Last Modified: 19-02-2025
 
 # Import necessary libraries
 from typing import List, Union
+import numpy as np
 import pandas as pd
 import matplotlib
 import matplotlib.pyplot as plt
@@ -245,15 +246,24 @@ class KitikiPlot(KitikiCell):
             # This allows for plotting only a subset of the data based on the user-defined range
             window_range= range( window_range[0], window_range[1])
 
+        if focus != None:
+            col_range= self.rows + self.window_length - 1
+            print( "COLUMN Range: ", col_range )
+        else:
+            col_range= self.cols
+
+        each_sample= np.concatenate( (data[0], data[1:data.shape[0], (-1)*self.stride:].flatten()) )
+
         # Generate cells for each sample in the specified window range and time frame columns
         for index in window_range:
 
-            each_sample= data[ index ]
+            if focus == None:
+                each_sample= data[ index ]
 
-            for time_frame in range(self.cols):
+            for time_frame in range( col_range ):
 
                 kitiki_cell_kwargs["alpha"]= focus_alpha if focus != None and ( time_frame< focus[0] or time_frame>= focus[1] ) else 1
-
+                
                 # Create each cell using specified parameters and add it to patches list 
                 cell_gen= self.create(  x= index,
                                         y= time_frame,
@@ -269,6 +279,8 @@ class KitikiPlot(KitikiCell):
                                         fallback_hatch= fallback_hatch,
                                         display_hatch= display_hatch,
                                         transpose= transpose,
+                                        focus= focus,
+                                        focus_alpha= focus_alpha,
                                         **kitiki_cell_kwargs
                                     )
                 patches.append( cell_gen )

kitikiplot/ecology/linear.py

@@ -8,7 +8,7 @@ Last Modified: 25-05-2025
 
 from kitikiplot.core import KitikiPlot
 
-def plot( data, focus, focus_alpha, xlabel, ylabel, xticks_values, ytick_prefix, cmap ):
+def plot( data, focus, focus_alpha, xlabel, ylabel, xticks_values, ytick_prefix, cmap= {} ):
 
     ktk= KitikiPlot( data= data, stride= 1, window_length= len(data) )
 

{kitikiplot-0.2.5.dist-info → kitikiplot-0.2.7.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.3
 Name: kitikiplot
-Version: 0.2.5
+Version: 0.2.7
 Summary: A Python library to visualize categorical sliding window data.
 License: MIT
 Keywords: sliding window,sequential,time-series,genome,categorical data
@@ -39,10 +39,8 @@ Description-Content-Type: text/markdown
 KitikiPlot is a Python library for visualizing sequential and time-series categorical "Sliding Window" data. <br>
 (The term 'kitiki' means 'window' in Telugu)
 
-Our preprint is published in **TechRxiv**. Find it <a href="https://www.techrxiv.org/users/877016/articles/1256589-kitikiplot-a-python-library-to-visualize-categorical-sliding-window-data"> here <a/>
+Genome Grid Plot Generator: 🤗 <a href= "https://huggingface.co/spaces/BodduSriPavan111/genomics">HuggingFace Demo</a>
 
-Research paper is published in **GIS Science Journal** Volume 12 Issue 1, 186-193, 2025 (Scopus indexed with Impact factor **6.1**). </br>
-Read it here: <a href="https://zenodo.org/records/14632005">https://zenodo.org/records/14632005</a>
 <!--
 ## Table of Contents</h2>
 - [Why Kitkiplot?](#What-and-why)
@@ -97,6 +95,11 @@ To join the Discord server for more discussion, click <a href="https://discord.g
 <a href="https://www.linkedin.com/in/boddusripavan/"> Boddu Sri Pavan </a>
 
 ## Citation
+Our preprint is published in **TechRxiv**. Find it <a href="https://www.techrxiv.org/users/877016/articles/1256589-kitikiplot-a-python-library-to-visualize-categorical-sliding-window-data"> here <a/>
+
+Research paper is published in **GIS Science Journal** Volume 12 Issue 1, 186-193, 2025 (Scopus indexed with Impact factor **6.1**). </br>
+Read it here: <a href="https://zenodo.org/records/14632005">https://zenodo.org/records/14632005</a>
+
 APA <br>
 > Boddu Sri Pavan, Chandrasheker Thummanagoti, & Boddu Swathi Sree. (2025). KitikiPlot A Python library to visualize categorical sliding window data. https://doi.org/10.5281/zenodo.14632005.
 

kitikiplot-0.2.7.dist-info/RECORD

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kitikiplot-0.2.5.dist-info/RECORD

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