kitikiplot 0.2.0__py3-none-any.whl → 0.2.2__py3-none-any.whl

kitikiplot/genomics/linear.py

@@ -0,0 +1,41 @@
+"""
+File Name: linear.py
+Description: This file defines linear genomic plot
+Author: Boddu Sri Pavan
+Date Created: 21-05-2025
+Last Modified: 21-05-2025
+"""
+
+from kitikiplot.core import KitikiPlot
+
+from Bio import SeqIO
+
+def plot( nucleotide_sequence: str )->  bool:
+    """
+    Generates linear genomic plot for short genome sequences.
+
+    Parameters
+    ----------
+    nucleotide_sequence : str
+        - Sequence of 'A', 'T', 'G', and 'C'.
+    """
+
+    # Preprocess input genomic sequence
+    nucleotide_sequence=nucleotide_sequence.upper()
+
+    ktk= KitikiPlot( data= nucleotide_sequence, stride= 1, window_length= len(nucleotide_sequence) )
+
+    ktk.plot(
+                figsize= (20, 1),
+                cell_width= 2,
+                cmap= {'A': '#007FFF', 'T': "#fffc00", "G": "#00ff00", "C": "#960018"},
+                transpose= True,
+                xlabel= "Nucleotides",
+                ylabel= "Window",
+                display_yticks= False,
+                xtick_prefix= "Nucleotide",
+                xticks_rotation= 90,
+                title= "Genome Visualization",
+                display_legend= True,
+                legend_kwargs= {"bbox_to_anchor": (1.01, 1), "loc":'upper left', "borderaxespad": 0.}
+            )

{kitikiplot-0.2.0.dist-info → kitikiplot-0.2.2.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.3
 Name: kitikiplot
-Version: 0.2.0
+Version: 0.2.2
 Summary: A Python library to visualize categorical sliding window data.
 License: MIT
 Keywords: sliding window,sequential,time-series,genome,categorical data
@@ -14,6 +14,7 @@ Classifier: Programming Language :: Python :: 3.11
 Classifier: Programming Language :: Python :: 3.12
 Classifier: Programming Language :: Python :: 3.13
 Classifier: Topic :: Scientific/Engineering :: Visualization
+Requires-Dist: biopython (>=1.85)
 Requires-Dist: matplotlib (>=3.10.1)
 Requires-Dist: numpy (>=2.2.5)
 Requires-Dist: pandas (>=2.2.3)

kitikiplot-0.2.2.dist-info/RECORD

@@ -0,0 +1,10 @@
+kitikiplot/core/__init__.py,sha256=7LpJy1V-PZ-JlfjsnRMjMXxTKaFt0JP0mj-A0SgS-sE,34
+kitikiplot/core/kitiki_cell.py,sha256=9kn33x8-4Zp_fVdmp5NK-V7fm3hDXZOxwCNO3uDZqIo,7016
+kitikiplot/core/kitiki_color_config.py,sha256=34KEE1CQJeMnB6gA-FgTHiIEP7rF1_17xv2XOakh1ds,11969
+kitikiplot/core/kitikiplot.py,sha256=uH5eQnWxswQsDC1b77cu5U_2m3ODfKRGqCxcredRagQ,19746
+kitikiplot/genomics/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+kitikiplot/genomics/linear.py,sha256=SCEgyyB4CoFzvFFR1EjQVSbRxXM10jpiBDXv4haw5mk,1279
+kitikiplot-0.2.2.dist-info/LICENSE,sha256=14Bs-3ieyNjj9kCnVLv8CHRXEvQVM6P5uLe-pz7cBI0,1088
+kitikiplot-0.2.2.dist-info/METADATA,sha256=MmY0KrakS9qSRV_luDRSHzuoyuQcbBXEOWdOC81R7H0,5303
+kitikiplot-0.2.2.dist-info/WHEEL,sha256=fGIA9gx4Qxk2KDKeNJCbOEwSrmLtjWCwzBz351GyrPQ,88
+kitikiplot-0.2.2.dist-info/RECORD,,

kitikiplot-0.2.0.dist-info/RECORD

@@ -1,8 +0,0 @@
-kitikiplot/__init__.py,sha256=7LpJy1V-PZ-JlfjsnRMjMXxTKaFt0JP0mj-A0SgS-sE,34
-kitikiplot/kitiki_cell.py,sha256=9kn33x8-4Zp_fVdmp5NK-V7fm3hDXZOxwCNO3uDZqIo,7016
-kitikiplot/kitiki_color_config.py,sha256=34KEE1CQJeMnB6gA-FgTHiIEP7rF1_17xv2XOakh1ds,11969
-kitikiplot/kitikiplot.py,sha256=uH5eQnWxswQsDC1b77cu5U_2m3ODfKRGqCxcredRagQ,19746
-kitikiplot-0.2.0.dist-info/LICENSE,sha256=14Bs-3ieyNjj9kCnVLv8CHRXEvQVM6P5uLe-pz7cBI0,1088
-kitikiplot-0.2.0.dist-info/METADATA,sha256=K4SKM7omJRZ7DVIajHrkmtUBMMLgV0plWdqtEahkdXQ,5269
-kitikiplot-0.2.0.dist-info/WHEEL,sha256=fGIA9gx4Qxk2KDKeNJCbOEwSrmLtjWCwzBz351GyrPQ,88
-kitikiplot-0.2.0.dist-info/RECORD,,