khoj 1.42.9.dev17__py3-none-any.whl → 1.42.9.dev26__py3-none-any.whl

khoj/processor/content/org_mode/orgnode.py

@@ -58,7 +58,7 @@ def makelist_with_filepath(filename):
     return makelist(f, filename)
 
 
-def makelist(file, filename) -> List["Orgnode"]:
+def makelist(file, filename, start_line: int = 1, ancestry_lines: int = 0) -> List["Orgnode"]:
     """
     Read an org-mode file and return a list of Orgnode objects
     created from this file.
@@ -66,7 +66,7 @@ def makelist(file, filename) -> List["Orgnode"]:
     ctr = 0
 
     if type(file) == str:
-        f = file.split("\n")
+        f = file.splitlines()
     else:
         f = file
 
@@ -114,14 +114,23 @@ def makelist(file, filename) -> List["Orgnode"]:
                     logbook = list()
                 thisNode.properties = property_map
                 nodelist.append(thisNode)
-            property_map = {"LINE": f"file:{normalize_filename(filename)}::{ctr}"}
+            # Account for ancestry lines that were prepended when calculating line numbers
+            if ancestry_lines > 0:
+                calculated_line = start_line + ctr - 1 - ancestry_lines
+                if calculated_line <= 0:
+                    calculated_line = 1  # Fallback to line 1 if calculation results in invalid line number
+            else:
+                calculated_line = start_line + ctr - 1
+                if calculated_line <= 0:
+                    calculated_line = ctr  # Use the original behavior if start_line calculation fails
+            property_map = {"LINE": f"file://{normalize_filename(filename)}#line={calculated_line}"}
             previous_level = level
             previous_heading: str = heading
             level = heading_search.group(1)
             heading = heading_search.group(2)
             bodytext = ""
             tags = list()  # set of all tags in headline
-            tag_search = re.search(r"(.*?)\s*:([a-zA-Z0-9].*?):$", heading)
+            tag_search = re.search(r"(.*?)\s+:([a-zA-Z0-9@_].*?):\s*$", heading)
             if tag_search:
                 heading = tag_search.group(1)
                 parsedtags = tag_search.group(2)
@@ -260,14 +269,6 @@ def makelist(file, filename) -> List["Orgnode"]:
         # Prefix filepath/title to ancestors
         n.ancestors = [file_title] + n.ancestors
 
-        # Set SOURCE property to a file+heading based org-mode link to the entry
-        if n.level == 0:
-            n.properties["LINE"] = f"file:{normalize_filename(filename)}::0"
-            n.properties["SOURCE"] = f"[[file:{normalize_filename(filename)}]]"
-        else:
-            escaped_heading = n.heading.replace("[", "\\[").replace("]", "\\]")
-            n.properties["SOURCE"] = f"[[file:{normalize_filename(filename)}::*{escaped_heading}]]"
-
     return nodelist
 
 
@@ -520,10 +521,11 @@ class Orgnode(object):
             n = n + "\n"
 
         # Output Property Drawer
-        n = n + indent + ":PROPERTIES:\n"
-        for key, value in self._properties.items():
-            n = n + indent + f":{key}: {value}\n"
-        n = n + indent + ":END:\n"
+        if self._properties:
+            n = n + indent + ":PROPERTIES:\n"
+            for key, value in self._properties.items():
+                n = n + indent + f":{key}: {value}\n"
+            n = n + indent + ":END:\n"
 
         # Output Body
         if self.hasBody:

khoj/processor/content/text_to_entries.py

@@ -81,8 +81,35 @@ class TextToEntries(ABC):
             chunked_entry_chunks = text_splitter.split_text(entry.compiled)
             corpus_id = uuid.uuid4()
 
+            line_start = None
+            last_offset = 0
+            if entry.uri and entry.uri.startswith("file://"):
+                if "#line=" in entry.uri:
+                    line_start = int(entry.uri.split("#line=", 1)[-1].split("&", 1)[0])
+                else:
+                    line_start = 0
+
             # Create heading prefixed entry from each chunk
             for chunk_index, compiled_entry_chunk in enumerate(chunked_entry_chunks):
+                # set line start in uri of chunked entries
+                entry_uri = entry.uri
+                if line_start is not None:
+                    # Find the chunk in the raw text to get an accurate line number.
+                    # Search for the unmodified chunk from the last offset.
+                    searchable_chunk = compiled_entry_chunk.strip()
+                    if searchable_chunk:
+                        chunk_start_pos_in_raw = entry.raw.find(searchable_chunk, last_offset)
+                        if chunk_start_pos_in_raw != -1:
+                            # Found the chunk. Calculate its line offset from the start of the raw text.
+                            line_offset_in_raw = entry.raw[:chunk_start_pos_in_raw].count("\n")
+                            new_line_num = line_start + line_offset_in_raw
+                            entry_uri = re.sub(r"#line=\d+", f"#line={new_line_num}", entry.uri)
+                            # Update search position for the next chunk to start after the current one.
+                            last_offset = chunk_start_pos_in_raw + len(searchable_chunk)
+                        else:
+                            # Chunk not found in raw text, likely from a heading. Use original line_start.
+                            entry_uri = re.sub(r"#line=\d+", f"#line={line_start}", entry.uri)
+
                 # Prepend heading to all other chunks, the first chunk already has heading from original entry
                 if chunk_index > 0 and entry.heading:
                     # Snip heading to avoid crossing max_tokens limit
@@ -99,6 +126,7 @@ class TextToEntries(ABC):
                 entry.raw = compiled_entry_chunk if raw_is_compiled else TextToEntries.clean_field(entry.raw)
                 entry.heading = TextToEntries.clean_field(entry.heading)
                 entry.file = TextToEntries.clean_field(entry.file)
+                entry_uri = TextToEntries.clean_field(entry_uri)
 
                 chunked_entries.append(
                     Entry(
@@ -107,6 +135,7 @@ class TextToEntries(ABC):
                         heading=entry.heading,
                         file=entry.file,
                         corpus_id=corpus_id,
+                        uri=entry_uri,
                     )
                 )
 
@@ -192,6 +221,7 @@ class TextToEntries(ABC):
                             file_type=file_type,
                             hashed_value=entry_hash,
                             corpus_id=entry.corpus_id,
+                            url=entry.uri,
                             search_model=model,
                             file_object=file_object,
                         )

khoj/processor/conversation/google/utils.py

@@ -76,7 +76,11 @@ def _is_retryable_error(exception: BaseException) -> bool:
     if isinstance(exception, gerrors.APIError):
         return exception.code in [429, 502, 503, 504]
     # client errors
-    if isinstance(exception, httpx.TimeoutException) or isinstance(exception, httpx.NetworkError):
+    if (
+        isinstance(exception, httpx.TimeoutException)
+        or isinstance(exception, httpx.NetworkError)
+        or isinstance(exception, httpx.ReadError)
+    ):
         return True
     # validation errors
     if isinstance(exception, ValueError):

khoj/processor/conversation/utils.py

@@ -646,7 +646,7 @@ def generate_chatml_messages_with_context(
 
         if not is_none_or_empty(chat.context):
             references = "\n\n".join(
-                {f"# File: {item.file}\n## {item.compiled}\n" for item in chat.context or [] if isinstance(item, dict)}
+                {f"# URI: {item.uri}\n## {item.compiled}\n" for item in chat.context or [] if isinstance(item, dict)}
             )
             message_context += [{"type": "text", "text": f"{prompts.notes_conversation.format(references=references)}"}]
 

khoj/routers/helpers.py

@@ -1263,8 +1263,9 @@ async def search_documents(
         compiled_references = [
             {
                 "query": item.additional["query"],
-                "compiled": item.additional["compiled"],
+                "compiled": item["entry"],
                 "file": item.additional["file"],
+                "uri": item.additional["uri"],
             }
             for item in search_results
         ]
@@ -2867,6 +2868,7 @@ async def view_file_content(
             {
                 "query": query,
                 "file": path,
+                "uri": path,
                 "compiled": filtered_text,
             }
         ]
@@ -2878,7 +2880,7 @@ async def view_file_content(
         logger.error(error_msg, exc_info=True)
 
         # Return an error result in the expected format
-        yield [{"query": query, "file": path, "compiled": error_msg}]
+        yield [{"query": query, "file": path, "uri": path, "compiled": error_msg}]
 
 
 async def grep_files(
@@ -2982,7 +2984,7 @@ async def grep_files(
             max_results,
         )
         if not line_matches:
-            yield {"query": query, "file": path_prefix, "compiled": "No matches found."}
+            yield {"query": query, "file": path_prefix, "uri": path_prefix, "compiled": "No matches found."}
             return
 
         # Truncate matched lines list if too long
@@ -2991,7 +2993,7 @@ async def grep_files(
                 f"... {len(line_matches) - max_results} more results found. Use stricter regex or path to narrow down results."
             ]
 
-        yield {"query": query, "file": path_prefix or "", "compiled": "\n".join(line_matches)}
+        yield {"query": query, "file": path_prefix, "uri": path_prefix, "compiled": "\n".join(line_matches)}
 
     except Exception as e:
         error_msg = f"Error using grep files tool: {str(e)}"
@@ -3000,6 +3002,7 @@ async def grep_files(
             {
                 "query": _generate_query(0, 0, path_prefix or "", regex_pattern, lines_before, lines_after),
                 "file": path_prefix,
+                "uri": path_prefix,
                 "compiled": error_msg,
             }
         ]
@@ -3032,7 +3035,7 @@ async def list_files(
             file_objects = await FileObjectAdapters.aget_file_objects_by_path_prefix(user, path)
 
         if not file_objects:
-            yield {"query": _generate_query(0, path, pattern), "file": path, "compiled": "No files found."}
+            yield {"query": _generate_query(0, path, pattern), "file": path, "uri": path, "compiled": "No files found."}
             return
 
         # Extract file names from file objects
@@ -3047,7 +3050,7 @@ async def list_files(
 
         query = _generate_query(len(files), path, pattern)
         if not files:
-            yield {"query": query, "file": path, "compiled": "No files found."}
+            yield {"query": query, "file": path, "uri": path, "compiled": "No files found."}
             return
 
         # Truncate the list if it's too long
@@ -3057,9 +3060,9 @@ async def list_files(
                 f"... {len(files) - max_files} more files found. Use glob pattern to narrow down results."
             ]
 
-        yield {"query": query, "file": path, "compiled": "\n- ".join(files)}
+        yield {"query": query, "file": path, "uri": path, "compiled": "\n- ".join(files)}
 
     except Exception as e:
         error_msg = f"Error listing files in {path}: {str(e)}"
         logger.error(error_msg, exc_info=True)
-        yield {"query": query, "file": path, "compiled": error_msg}
+        yield {"query": query, "file": path, "uri": path, "compiled": error_msg}

khoj/search_type/text_search.py

@@ -157,6 +157,7 @@ def collate_results(hits, dedupe=True):
                     "additional": {
                         "source": hit.file_source,
                         "file": hit.file_path,
+                        "uri": hit.url,
                         "compiled": hit.compiled,
                         "heading": hit.heading,
                     },
@@ -180,6 +181,7 @@ def deduplicated_search_responses(hits: List[SearchResponse]):
                     "additional": {
                         "source": hit.additional["source"],
                         "file": hit.additional["file"],
+                        "uri": hit.additional["uri"],
                         "query": hit.additional["query"],
                         "compiled": hit.additional["compiled"],
                         "heading": hit.additional["heading"],

khoj/utils/rawconfig.py

@@ -176,6 +176,7 @@ class Entry:
     compiled: str
     heading: Optional[str]
     file: Optional[str]
+    uri: Optional[str] = None
     corpus_id: str
 
     def __init__(
@@ -184,6 +185,7 @@ class Entry:
         compiled: str = None,
         heading: Optional[str] = None,
         file: Optional[str] = None,
+        uri: Optional[str] = None,
         corpus_id: uuid.UUID = None,
     ):
         self.raw = raw
@@ -191,6 +193,14 @@ class Entry:
         self.heading = heading
         self.file = file
         self.corpus_id = str(corpus_id)
+        if uri:
+            self.uri = uri
+        elif file and (file.startswith("http") or file.startswith("file://")):
+            self.uri = file
+        elif file:
+            self.uri = f"file://{file}"
+        else:
+            self.uri = None
 
     def to_json(self) -> str:
         return json.dumps(self.__dict__, ensure_ascii=False)
@@ -206,4 +216,5 @@ class Entry:
             file=dictionary.get("file", None),
             heading=dictionary.get("heading", None),
             corpus_id=dictionary.get("corpus_id", None),
+            uri=dictionary.get("uri", None),
         )

{khoj-1.42.9.dev17.dist-info → khoj-1.42.9.dev26.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: khoj
-Version: 1.42.9.dev17
+Version: 1.42.9.dev26
 Summary: Your Second Brain
 Project-URL: Homepage, https://khoj.dev
 Project-URL: Documentation, https://docs.khoj.dev

{khoj-1.42.9.dev17.dist-info → khoj-1.42.9.dev26.dist-info}/RECORD

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