kaiko-eva 0.2.1__py3-none-any.whl → 0.3.0__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (91) hide show
  1. eva/core/data/dataloaders/__init__.py +2 -1
  2. eva/core/data/dataloaders/collate_fn/__init__.py +5 -0
  3. eva/core/data/dataloaders/collate_fn/collate.py +24 -0
  4. eva/core/data/dataloaders/dataloader.py +4 -0
  5. eva/core/interface/interface.py +34 -1
  6. eva/core/metrics/defaults/classification/multiclass.py +45 -35
  7. eva/core/models/modules/__init__.py +2 -1
  8. eva/core/models/modules/scheduler.py +51 -0
  9. eva/core/models/transforms/extract_cls_features.py +1 -1
  10. eva/core/models/transforms/extract_patch_features.py +1 -1
  11. eva/core/models/wrappers/base.py +17 -14
  12. eva/core/models/wrappers/from_function.py +5 -4
  13. eva/core/models/wrappers/from_torchhub.py +5 -6
  14. eva/core/models/wrappers/huggingface.py +8 -5
  15. eva/core/models/wrappers/onnx.py +4 -4
  16. eva/core/trainers/_recorder.py +4 -1
  17. eva/core/trainers/functional.py +40 -43
  18. eva/core/utils/factory.py +66 -0
  19. eva/core/utils/registry.py +42 -0
  20. eva/core/utils/requirements.py +26 -0
  21. eva/language/__init__.py +13 -0
  22. eva/language/data/__init__.py +5 -0
  23. eva/language/data/datasets/__init__.py +9 -0
  24. eva/language/data/datasets/classification/__init__.py +7 -0
  25. eva/language/data/datasets/classification/base.py +63 -0
  26. eva/language/data/datasets/classification/pubmedqa.py +149 -0
  27. eva/language/data/datasets/language.py +13 -0
  28. eva/language/models/__init__.py +25 -0
  29. eva/language/models/modules/__init__.py +5 -0
  30. eva/language/models/modules/text.py +85 -0
  31. eva/language/models/modules/typings.py +16 -0
  32. eva/language/models/wrappers/__init__.py +11 -0
  33. eva/language/models/wrappers/huggingface.py +69 -0
  34. eva/language/models/wrappers/litellm.py +77 -0
  35. eva/language/models/wrappers/vllm.py +149 -0
  36. eva/language/utils/__init__.py +5 -0
  37. eva/language/utils/str_to_int_tensor.py +95 -0
  38. eva/vision/data/dataloaders/__init__.py +2 -1
  39. eva/vision/data/dataloaders/worker_init.py +35 -0
  40. eva/vision/data/datasets/__init__.py +5 -5
  41. eva/vision/data/datasets/segmentation/__init__.py +4 -4
  42. eva/vision/data/datasets/segmentation/btcv.py +3 -0
  43. eva/vision/data/datasets/segmentation/consep.py +5 -4
  44. eva/vision/data/datasets/segmentation/lits17.py +231 -0
  45. eva/vision/data/datasets/segmentation/metadata/__init__.py +1 -0
  46. eva/vision/data/datasets/segmentation/metadata/_msd_task7_pancreas.py +287 -0
  47. eva/vision/data/datasets/segmentation/msd_task7_pancreas.py +243 -0
  48. eva/vision/data/datasets/segmentation/total_segmentator_2d.py +1 -1
  49. eva/vision/data/transforms/__init__.py +11 -2
  50. eva/vision/data/transforms/base/__init__.py +5 -0
  51. eva/vision/data/transforms/base/monai.py +27 -0
  52. eva/vision/data/transforms/common/__init__.py +2 -1
  53. eva/vision/data/transforms/common/squeeze.py +24 -0
  54. eva/vision/data/transforms/croppad/__init__.py +4 -0
  55. eva/vision/data/transforms/croppad/rand_crop_by_label_classes.py +74 -0
  56. eva/vision/data/transforms/croppad/rand_crop_by_pos_neg_label.py +6 -2
  57. eva/vision/data/transforms/croppad/rand_spatial_crop.py +89 -0
  58. eva/vision/data/transforms/intensity/rand_scale_intensity.py +6 -2
  59. eva/vision/data/transforms/intensity/rand_shift_intensity.py +8 -4
  60. eva/vision/models/modules/semantic_segmentation.py +27 -11
  61. eva/vision/models/networks/backbones/__init__.py +2 -3
  62. eva/vision/models/networks/backbones/_utils.py +1 -1
  63. eva/vision/models/networks/backbones/pathology/bioptimus.py +4 -4
  64. eva/vision/models/networks/backbones/pathology/gigapath.py +2 -2
  65. eva/vision/models/networks/backbones/pathology/histai.py +3 -3
  66. eva/vision/models/networks/backbones/pathology/hkust.py +2 -2
  67. eva/vision/models/networks/backbones/pathology/kaiko.py +7 -7
  68. eva/vision/models/networks/backbones/pathology/lunit.py +3 -3
  69. eva/vision/models/networks/backbones/pathology/mahmood.py +3 -3
  70. eva/vision/models/networks/backbones/pathology/owkin.py +3 -3
  71. eva/vision/models/networks/backbones/pathology/paige.py +3 -3
  72. eva/vision/models/networks/backbones/radiology/swin_unetr.py +2 -2
  73. eva/vision/models/networks/backbones/radiology/voco.py +5 -5
  74. eva/vision/models/networks/backbones/registry.py +2 -44
  75. eva/vision/models/networks/backbones/timm/backbones.py +2 -2
  76. eva/vision/models/networks/backbones/universal/__init__.py +8 -1
  77. eva/vision/models/networks/backbones/universal/vit.py +53 -3
  78. eva/vision/models/networks/decoders/segmentation/decoder2d.py +1 -1
  79. eva/vision/models/networks/decoders/segmentation/linear.py +1 -1
  80. eva/vision/models/networks/decoders/segmentation/semantic/common.py +2 -2
  81. eva/vision/models/networks/decoders/segmentation/typings.py +1 -1
  82. eva/vision/models/wrappers/from_registry.py +14 -9
  83. eva/vision/models/wrappers/from_timm.py +6 -5
  84. {kaiko_eva-0.2.1.dist-info → kaiko_eva-0.3.0.dist-info}/METADATA +22 -12
  85. {kaiko_eva-0.2.1.dist-info → kaiko_eva-0.3.0.dist-info}/RECORD +89 -58
  86. {kaiko_eva-0.2.1.dist-info → kaiko_eva-0.3.0.dist-info}/WHEEL +1 -1
  87. eva/vision/data/datasets/segmentation/lits.py +0 -199
  88. eva/vision/data/datasets/segmentation/lits_balanced.py +0 -94
  89. /eva/vision/data/datasets/segmentation/{_total_segmentator.py → metadata/_total_segmentator.py} +0 -0
  90. {kaiko_eva-0.2.1.dist-info → kaiko_eva-0.3.0.dist-info}/entry_points.txt +0 -0
  91. {kaiko_eva-0.2.1.dist-info → kaiko_eva-0.3.0.dist-info}/licenses/LICENSE +0 -0
@@ -2,18 +2,20 @@
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  from typing import Any, Callable, Dict
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+ import torch
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  from typing_extensions import override
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- from eva.core.models import wrappers
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- from eva.vision.models.networks.backbones import BackboneModelRegistry
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+ from eva.core.models.wrappers import base
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+ from eva.core.utils import factory
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+ from eva.vision.models.networks.backbones import backbone_registry
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11
 
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- class ModelFromRegistry(wrappers.BaseModel):
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+ class ModelFromRegistry(base.BaseModel[torch.Tensor, torch.Tensor]):
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  """Wrapper class for vision backbone models.
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  This class can be used by load backbones available in eva's
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  model registry by name. New backbones can be registered by using
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- the `@register_model(model_name)` decorator.
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+ the `@backbone_registry.register(model_name)` decorator.
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  """
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  def __init__(
@@ -21,7 +23,7 @@ class ModelFromRegistry(wrappers.BaseModel):
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  model_name: str,
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  model_kwargs: Dict[str, Any] | None = None,
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  model_extra_kwargs: Dict[str, Any] | None = None,
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- tensor_transforms: Callable | None = None,
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+ transforms: Callable | None = None,
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  ) -> None:
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  """Initializes the model.
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@@ -29,10 +31,10 @@ class ModelFromRegistry(wrappers.BaseModel):
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  model_name: The name of the model to load.
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  model_kwargs: The arguments used for instantiating the model.
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  model_extra_kwargs: Extra arguments used for instantiating the model.
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- tensor_transforms: The transforms to apply to the output tensor
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+ transforms: The transforms to apply to the output tensor
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  produced by the model.
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  """
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- super().__init__(tensor_transforms=tensor_transforms)
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+ super().__init__(transforms=transforms)
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  self._model_name = model_name
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  self._model_kwargs = model_kwargs or {}
@@ -42,7 +44,10 @@ class ModelFromRegistry(wrappers.BaseModel):
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  @override
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  def load_model(self) -> None:
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- self._model = BackboneModelRegistry.load_model(
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- self._model_name, self._model_kwargs | self._model_extra_kwargs
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+ self._model = factory.ModuleFactory(
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+ registry=backbone_registry,
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+ name=self._model_name,
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+ init_args=self._model_kwargs | self._model_extra_kwargs,
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  )
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+
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  ModelFromRegistry.__name__ = self._model_name
@@ -4,12 +4,13 @@ from typing import Any, Callable, Dict, Tuple
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  from urllib import parse
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  import timm
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+ import torch
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  from typing_extensions import override
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- from eva.core.models import wrappers
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+ from eva.core.models.wrappers import base
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- class TimmModel(wrappers.BaseModel):
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+ class TimmModel(base.BaseModel[torch.Tensor, torch.Tensor]):
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  """Model wrapper for `timm` models.
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  Note that only models with `forward_intermediates`
@@ -23,7 +24,7 @@ class TimmModel(wrappers.BaseModel):
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  checkpoint_path: str = "",
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  out_indices: int | Tuple[int, ...] | None = None,
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  model_kwargs: Dict[str, Any] | None = None,
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- tensor_transforms: Callable | None = None,
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+ transforms: Callable | None = None,
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  ) -> None:
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  """Initializes the encoder.
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@@ -34,10 +35,10 @@ class TimmModel(wrappers.BaseModel):
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  out_indices: Returns last n blocks if `int`, all if `None`, select
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  matching indices if sequence.
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  model_kwargs: Extra model arguments.
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- tensor_transforms: The transforms to apply to the output tensor
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+ transforms: The transforms to apply to the output tensor
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  produced by the model.
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  """
40
- super().__init__(tensor_transforms=tensor_transforms)
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+ super().__init__(transforms=transforms)
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  self._model_name = model_name
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  self._pretrained = pretrained
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
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  Name: kaiko-eva
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- Version: 0.2.1
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+ Version: 0.3.0
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  Summary: Evaluation Framework for oncology foundation models.
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  Keywords: machine-learning,evaluation-framework,oncology,foundation-models
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  Author-Email: Ioannis Gatopoulos <ioannis@kaiko.ai>, =?utf-8?q?Nicolas_K=C3=A4nzig?= <nicolas@kaiko.ai>, Roman Moser <roman@kaiko.ai>
@@ -242,6 +242,9 @@ Requires-Dist: imagesize>=1.4.1; extra == "vision"
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  Requires-Dist: scipy>=1.14.0; extra == "vision"
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  Requires-Dist: monai>=1.3.2; extra == "vision"
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  Requires-Dist: einops>=0.8.1; extra == "vision"
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+ Provides-Extra: language
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+ Requires-Dist: datasets>=3.2.0; extra == "language"
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+ Requires-Dist: litellm>=1.61.8; extra == "language"
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  Provides-Extra: all
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  Requires-Dist: h5py>=3.10.0; extra == "all"
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  Requires-Dist: nibabel>=4.0.1; extra == "all"
@@ -255,6 +258,8 @@ Requires-Dist: imagesize>=1.4.1; extra == "all"
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  Requires-Dist: scipy>=1.14.0; extra == "all"
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  Requires-Dist: monai>=1.3.2; extra == "all"
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  Requires-Dist: einops>=0.8.1; extra == "all"
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+ Requires-Dist: datasets>=3.2.0; extra == "all"
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+ Requires-Dist: litellm>=1.61.8; extra == "all"
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  Description-Content-Type: text/markdown
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  <div align="center">
@@ -293,7 +298,7 @@ Check out the [documentation](https://kaiko-ai.github.io/eva/) for more informat
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  ### Highlights:
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  - Easy and reliable benchmark of Oncology FMs
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- - Supports path-level classification, slide-level classification and semantic segmentation downstream tasks
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+ - Supports patch-level classification, slide-level classification, semantic segmentation, and text classification downstream tasks
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  - Automatic embedding inference and evaluation of a downstream task
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  - Native support of popular medical [datasets](https://kaiko-ai.github.io/eva/dev/datasets/) and models
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  - Produce statistics over multiple evaluation fits and multiple metrics
@@ -308,6 +313,9 @@ pip install kaiko-eva
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  # to install the expanded `vision` version
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  pip install 'kaiko-eva[vision]'
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+ # to install the expanded `language` version
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+ pip install 'kaiko-eva[language]'
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+
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  # to install everything
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  pip install 'kaiko-eva[all]'
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  ```
@@ -448,26 +456,28 @@ input, resulting in a faster evaluation.
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  Here are some examples to get you started:
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  - Perform a downstream offline **classification** evaluation of `DINO ViT-S/16`
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- on the `BACH` dataset with linear probing by first inferring the embeddings
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- and then performing 5 sequential fits:
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+ on the `BACH` dataset with linear probing by first pre-calculating the embeddings:
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  ```sh
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- export DOWNLOAD_DATA=true
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- eva predict_fit --config https://raw.githubusercontent.com/kaiko-ai/eva/main/configs/vision/dino_vit/offline/bach.yaml
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+ DOWNLOAD_DATA=true \
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+ MODEL_NAME=universal/vit_small_patch16_224_dino \
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+ eva predict_fit --config https://raw.githubusercontent.com/kaiko-ai/eva/main/configs/vision/pathology/offline/classification/bach.yaml
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  ```
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458
- - Perform a downstream online **segmentation** evaluation of `DINO ViT-S/16` on the
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- `MoNuSAC` dataset with the `ConvDecoderMS` decoder:
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+ - Perform a downstream online **segmentation** evaluation of `DINO ViT-S/16` on the `MoNuSAC` dataset with the `ConvDecoderWithImage` decoder:
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  ```sh
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- export DOWNLOAD_DATA=true
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- eva fit --config https://raw.githubusercontent.com/kaiko-ai/eva/main/configs/vision/dino_vit/online/monusac.yaml
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+ DOWNLOAD_DATA=true \
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+ MODEL_NAME=universal/vit_small_patch16_224_dino \
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+ eva fit --config https://raw.githubusercontent.com/kaiko-ai/eva/main/configs/vision/pathology/online/segmentation/monusac.yaml
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  ```
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473
+ By default `eva` will perform 5 evaluation runs using different seeds, however, you can control the number of runs through the `N_RUNS` environment variable or in the configuration file. The results will be saved to `./logs` by default, or to `OUTPUT_ROOT` if specified.
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+
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  For more examples, take a look at the [configs](https://github.com/kaiko-ai/eva/tree/main/configs)
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- and [tutorials](https://kaiko-ai.github.io/eva/dev/user-guide/advanced/replicate_evaluations/).
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+ and [tutorials](https://kaiko-ai.github.io/eva/main/user-guide/advanced/replicate_evaluations/).
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477
 
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  > [!NOTE]
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  > All the datasets that support automatic download in the repo have by default the option to automatically download set to false.
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- > For automatic download you have to manually set the environmental variable `DOWNLOAD_DATA=true` or in the configuration file `download=true`.
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+ > For automatic download you have to manually set the environment variable `DOWNLOAD_DATA=true` or in the configuration file `download=true`.
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  ## Leaderboards
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@@ -16,8 +16,10 @@ eva/core/cli/cli.py,sha256=AZ4B4OP3D2af9H2RYBd5nxoy5I9DlaClZaadSWpPEPI,422
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  eva/core/cli/logo.py,sha256=x6-vGWI0s9gza-xxQrBDi2wneb2wFU_mQGHgpAiq2MQ,786
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  eva/core/cli/setup.py,sha256=kR-7l4X5Hu8kSLoQZGYGIeLXtn9S_EU52dauDy6fm0w,2663
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  eva/core/data/__init__.py,sha256=yG3BeOWhp1EjVYMFqx8M_TBWFDyfIwwksQGQmMdSPaI,340
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- eva/core/data/dataloaders/__init__.py,sha256=fbNClVZ8J3QoGi4qiPq635ig1j9GdI7six3RhfwDbjY,110
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- eva/core/data/dataloaders/dataloader.py,sha256=Ek_OqlOuQSiipFjBJ39DFyWvW3CdqAB2bufOcEs0ChU,2525
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+ eva/core/data/dataloaders/__init__.py,sha256=0AvpsPOdh4NX5rwkX9Th1M_rzxZVVzTPTdC5oTGFd5w,194
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+ eva/core/data/dataloaders/collate_fn/__init__.py,sha256=CfSAVrPD36shpyYAkob2ny05VWymb95MutawQcZkbuo,134
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+ eva/core/data/dataloaders/collate_fn/collate.py,sha256=oBdxaDCIaXBB6H8LB90Qsi2Inw1tyHGF4kAFBINPOeQ,689
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+ eva/core/data/dataloaders/dataloader.py,sha256=amRIwbmI6Hi2qS-ciKkv7ehgkBbMCHx7XUaEMlttWkw,2688
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  eva/core/data/datamodules/__init__.py,sha256=qZchYbgxo9lxYnGoqdk0C6MfS2IbF0WItO0kCdP9Mqc,229
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  eva/core/data/datamodules/call.py,sha256=jjj9w3UXYuQB-qyCcw1EZpRJW10OC1I3dvgvsuQWLck,940
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  eva/core/data/datamodules/datamodule.py,sha256=_pK59oXDe53oDkmv6eoJUvfl44WlFkrbC8KXSRMs_20,5533
@@ -46,7 +48,7 @@ eva/core/data/transforms/padding/pad_2d_tensor.py,sha256=J4maGFmeQf9IHRxt5kU-6eI
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  eva/core/data/transforms/sampling/__init__.py,sha256=BFKbvRjlZrwS0GcNrM54ZSWt6PrQARfFlXM1jJ-wpvo,149
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  eva/core/data/transforms/sampling/sample_from_axis.py,sha256=Zbhp94lVa70WQKmSOKMTsOMe2c7wLqNZto7JqWhSdtI,1229
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  eva/core/interface/__init__.py,sha256=chdpKXipxe1NP-Fgr_d9r6X1gMna0XiEa38waJ6FzTM,98
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- eva/core/interface/interface.py,sha256=GzjneNHhTIEuLbydUG9cSmpHjJ4_IENGM-glN8RaRxY,2741
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+ eva/core/interface/interface.py,sha256=VNagHKsr2T7Ufm1rpA0NCnMi6F2qpKEmMBq_3eGZIRE,3826
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  eva/core/loggers/__init__.py,sha256=4YMLNlN9LnuKqhBI1R1keh69dmMD-2lcH3HKwwyn380,266
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  eva/core/loggers/dummy.py,sha256=Y7ypH0ecSAIkkZ5LzTmNNEzlKkqeaHfUNMCDKVOg6D4,1204
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  eva/core/loggers/experimental_loggers.py,sha256=p5uCK_9QCYufRhE-LZQUJWbhGElyobX_zRM78yX4p2o,230
@@ -64,7 +66,7 @@ eva/core/metrics/binary_balanced_accuracy.py,sha256=MabsXAtVfLqSaSIIpE0HIM6bo8uR
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  eva/core/metrics/defaults/__init__.py,sha256=IeqLcoxLNddtuuFao5r85ZVxTyFP6iFsj1K8iXCTSes,255
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  eva/core/metrics/defaults/classification/__init__.py,sha256=xMzE4yV8NoUdcmk2FCKohEUav1GJcxYn60S1KNgXbJY,316
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  eva/core/metrics/defaults/classification/binary.py,sha256=9ll6ZOcNGQdsg7ln9DAQ0u-OzsXSzEbueXe-dVJkJZ8,2322
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- eva/core/metrics/defaults/classification/multiclass.py,sha256=8Aesy_rKtp4KxfXJtDCmk6FsGxIFS4Ywu2CH1VIRL7M,2518
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+ eva/core/metrics/defaults/classification/multiclass.py,sha256=i5Oimxps3kjIwGAHKIdylOPJUUkzo6_wfG5JAw6vyAc,2796
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  eva/core/metrics/structs/__init__.py,sha256=cvn7E4k5vJmpwJj_zezmtZa_Nl_RddDM1G-MO8TP0po,422
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  eva/core/metrics/structs/collection.py,sha256=bNfCekHN8pzD49-YTqVxrmxFtiQfNxnv-RwkxCL6rbc,149
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@@ -72,10 +74,11 @@ eva/core/metrics/structs/module.py,sha256=pHpIAt5HQDoYWvyFXxYTZleTKMW1iaTCgwAkty
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  eva/core/metrics/structs/typings.py,sha256=qJd-FiD2IhJgBeo8FyP0vpVUIH4RKb1k6zYvHtjUA04,388
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+ eva/core/models/modules/__init__.py,sha256=_4VjN9Qs4_mftEVgt0KqVxCRAtDcKYbUnBA3Ox1Pzis,350
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+ eva/core/models/transforms/extract_cls_features.py,sha256=A-oNNiGYBkMLK_E9DrzJUJuTZETERX75w0lg35-rj0g,1498
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+ eva/core/models/transforms/extract_patch_features.py,sha256=5UsHjZnh3Uk2jAfi3GLtxoJ14ALTrfVoWUy8nTspRDY,2218
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+ eva/core/models/wrappers/base.py,sha256=S3LGbb_wo2ZTeDvoLvSlaymBsRN6UAuKrCmVAGasHWY,1452
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+ eva/core/models/wrappers/huggingface.py,sha256=-_fA81YRnoMc7O7SbrnCEj1dM_xArpQ8WdsZk9z_f1E,1449
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+ eva/core/models/wrappers/onnx.py,sha256=34li_xSwPryN8nJDrFyif_Hve1AEH7Ry9E_lZmf7JJM,1834
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- eva/core/trainers/functional.py,sha256=rLtQZw8TcAa4NYIf901TmoQiJDNm4RGVLN-64nku3Jo,4445
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+ eva/core/trainers/functional.py,sha256=tsBfpXjEQ8BiBJ9wZWp0AUUOOxy7UUrLX4GSjQZTeCs,4510
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+ eva/core/utils/factory.py,sha256=upWPWkWW7p3_ZoePAzbkkZvEPiAY4OaOQkwNvh0oa-E,2397
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+ eva/core/utils/registry.py,sha256=iEDVsQ7DdPXhzfW32z3lWNgwjagR_jh_g4VkvajjRK4,1348
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+ eva/core/utils/requirements.py,sha256=u01QPnBDu0YApncxgvg7xEANubyGSptqja12cycg3k0,909
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+ eva/language/__init__.py,sha256=EQxtGM6zT3y-6EGecGAo2IXKS6J8dyWNOGP2mvD7fZ0,360
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+ eva/language/data/__init__.py,sha256=ONF-CLBK2HO2p1bMCAbdvaHfSsYjdSE9-O3lWgwQQGk,89
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+ eva/language/data/datasets/__init__.py,sha256=AeGw3EVyz5w8Ja2m8Hd3FoKkCeG68M0BwtF64VCvOk4,211
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+ eva/language/data/datasets/classification/__init__.py,sha256=HXtgJpMt9CgqvdeWc147bOn-9YeUMcL8v-0UHHkY_A4,144
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+ eva/language/data/datasets/classification/base.py,sha256=53Tbu8dRSMuNfRB_xEBk_3wSe0jRqd_S-IwE9WIpgW0,1669
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+ eva/language/data/datasets/classification/pubmedqa.py,sha256=AxqW5OQAtDBLVX-Sr0WIt3E7GBbkGMUPOvhOlKLTLh8,5439
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+ eva/language/data/datasets/language.py,sha256=Kjy1X9xZBIfjjEYJKMikgKhLaquugRSjXTYM_HWiHmw,305
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+ eva/language/models/__init__.py,sha256=ggL8uDv_J8vQTr5fc5j8UENoPA24h2Bo3uNSdd_vRU0,606
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+ eva/language/models/modules/__init__.py,sha256=UWO_yq7kPzTrptl6iWTFy07E_Cyzf-sTu-zAK-sN3CI,112
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+ eva/language/models/modules/text.py,sha256=wknEnS_t8IToLTo_F9AG4EXkt0_6o4n6dYm-8AVxgOY,2906
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+ eva/language/models/modules/typings.py,sha256=dWq3FTbvGZGoIMTEIX1yWBk_VFKIHsvxaTvBXlbJfCA,379
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+ eva/language/models/wrappers/__init__.py,sha256=syKHBqX3MRD2oq_MjDjvoNC6W0F8TdmGYqhwrGLBahI,402
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+ eva/language/models/wrappers/huggingface.py,sha256=l3wVOB4QOe2_yeG4xwNm0imP_kWbjM8RG0ISE4ANAyE,2396
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+ eva/language/models/wrappers/litellm.py,sha256=0GSo3gxUv1Ah6FQ6VqTiiu_0TVx-h4xUkZqdOAGbKTM,2619
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+ eva/language/models/wrappers/vllm.py,sha256=LXadfveGSHmjWAlOBrJm1QHkKzB_O-s3M8U7bnKfW-E,5684
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+ eva/language/utils/__init__.py,sha256=jqrU3o80NAwt6HbNDWSM3e3B1-65vw811DqiUWT0Bys,150
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+ eva/language/utils/str_to_int_tensor.py,sha256=YlNppLlAoX0ZRVfcDX4BStCQPbS1NNParcwptxH0_wE,3143
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- eva/vision/data/dataloaders/__init__.py,sha256=7AOD_UF3hMokrGxJ2tbawH44ujQaesDsaW-3HWorYv8,128
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+ eva/vision/data/dataloaders/__init__.py,sha256=9ykBD4vyZ-Yv3IEnqvVcSMURS-gXWjOunA43brQK6Hg,207
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- eva/vision/data/datasets/__init__.py,sha256=NW034jrOnpDwYBQfsTjWG6jDJY_dPWKV-cq37HkBm10,1014
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+ eva/vision/data/dataloaders/worker_init.py,sha256=lFWywHGCC4QxHeDXrneF8DQ45XG3WmVltEELJrPyLz0,1182
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+ eva/vision/data/datasets/__init__.py,sha256=s3h4w71LiM6dT6AYWzCG2-nexkSuuTWixw4KrCGAhS8,1026
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- eva/vision/data/datasets/segmentation/_total_segmentator.py,sha256=DTaQaAisY7j1h0-zYk1_81Sr4b3D9PTMieYX0PMPtIc,3127
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- eva/vision/data/datasets/segmentation/consep.py,sha256=SBH1vD3RjFNRMVeo07d2PqSAInZsWHR2d3xCpCoDVpM,6014
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+ eva/vision/data/datasets/segmentation/btcv.py,sha256=9rlEqGyb2SGJBY6Oj42FlHajQF8csf1Jq6jeuPSsfXI,8396
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+ eva/vision/data/datasets/segmentation/consep.py,sha256=VgP69sjwPVfIY8-5MbsNDu1tdDrTac2DQI2e5vukk9c,6065
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- eva/vision/data/datasets/segmentation/lits.py,sha256=AsKsTQZBNXlYU_UllBrdr04rS8K4TDkG_vqR-aVr5ik,7267
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- eva/vision/data/datasets/segmentation/lits_balanced.py,sha256=OQ2AK6-wLE0uMvgQJtfBJTUJqS_WBfmsJXgBfe4gU8A,3451
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+ eva/vision/data/datasets/segmentation/lits17.py,sha256=kcSCKxsgtUuCD1YEYvrb_L_BgOtZC8xDq1lX8ldSZc4,7635
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+ eva/vision/data/datasets/segmentation/metadata/__init__.py,sha256=o9Od0v6N9dNdf8hfefn2QaNNCD2sZMvc2K58zHA_Nrg,24
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+ eva/vision/data/datasets/segmentation/metadata/_msd_task7_pancreas.py,sha256=O2-ye0A7wIjcI_D857uvpYw-jckTqfhBUrhinqSNWq0,2553
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+ eva/vision/data/datasets/segmentation/metadata/_total_segmentator.py,sha256=DTaQaAisY7j1h0-zYk1_81Sr4b3D9PTMieYX0PMPtIc,3127
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- eva/vision/data/datasets/segmentation/total_segmentator_2d.py,sha256=3cWpJkZmJ7IUJhigw69YLFOg2_-yzXSLGXqWVPUsn8Y,16978
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+ eva/vision/data/datasets/segmentation/msd_task7_pancreas.py,sha256=dTsPD73PAP15VOXdHnX4eQqbpz2jGpCB31YISzinUd4,8964
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+ eva/vision/data/datasets/segmentation/total_segmentator_2d.py,sha256=TGz67AGuv8_Bm5DM5TyCtzRTuGXOuctZZNxdQtBxF1g,16987
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- eva/vision/data/transforms/__init__.py,sha256=Bv1aPvjahteAZzVGSuxzHz2LRwa63NV7IcoPzKUt_fY,720
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- eva/vision/data/transforms/common/__init__.py,sha256=ZHzpdr-THc9CgFFbAVMWUiZrUNUiHnCDM8GYhM7tMfU,138
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+ eva/vision/data/transforms/__init__.py,sha256=39KkoDaIILjgbCEi_WD48a0p6TKV7Woe6744a-CLeOU,863
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+ eva/vision/data/transforms/base/__init__.py,sha256=d3gAnEHx8WZHuUpKLr0YAC1JR60qhRY02yeoADrx1Yw,143
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+ eva/vision/data/transforms/base/monai.py,sha256=g2U4eNxKiPm6TXjHjKZ4L8-1zxa1tEf-c73kKI_7WwQ,1081
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+ eva/vision/data/transforms/common/__init__.py,sha256=LWA5u0VsWzEEugdKpjpePr7fgV_XIGdASGwoaOU29Ac,211
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- eva/vision/data/transforms/croppad/__init__.py,sha256=d36WGe9x39p-d7VymRM29qdquv8YEa0RfsTfwt7Cou4,375
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+ eva/vision/data/transforms/common/squeeze.py,sha256=N9G2XRKOCuqaaLc27jWy8a-x1kgxez0hM2fDPH4w5Ak,726
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+ eva/vision/data/transforms/croppad/__init__.py,sha256=sa-M4JMdZGB39JqWOLAJvoun4YK3N4hBFuM--DZ8SnE,606
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- eva/vision/data/transforms/croppad/rand_crop_by_pos_neg_label.py,sha256=8CwMYAOQgOIb1Uw1jc219aqY3s2tCWd6r-2nU7kqOLc,5538
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+ eva/vision/data/transforms/croppad/rand_crop_by_label_classes.py,sha256=9oRY1ZuvUGuJNRkAT7JEquWBrYmNAD82FebrbvwVEtc,2587
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+ eva/vision/data/transforms/croppad/rand_crop_by_pos_neg_label.py,sha256=5omKDSECPdnWEt-AXlu8oeN7N-qa1MXekEggZ08KeIQ,5670
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+ eva/vision/data/transforms/croppad/rand_spatial_crop.py,sha256=yKAW5GN1B1vac74REYpBbrRhKxI2BhGA_LDEJ_AcO5w,3769
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- eva/vision/data/transforms/intensity/rand_scale_intensity.py,sha256=DDcFWTmq5UbwISO9qGIPOQJ72rx7JQWtVi2OxggLzyE,2041
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- eva/vision/data/transforms/intensity/rand_shift_intensity.py,sha256=9YNREhRoCzLOt2C21daum62cbB53ZRcYOSuSW_Jz7eQ,1974
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+ eva/vision/data/transforms/intensity/rand_scale_intensity.py,sha256=x3gYRRAFbZXFWgqvoUjT0sDFWT6zbhja3PJLXbOBtTg,2184
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+ eva/vision/data/transforms/intensity/rand_shift_intensity.py,sha256=5ngSHfHgJOR9KQykNKJhQMWhQYj781Mj_JKJ_ADchbM,2117
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+ eva/vision/models/networks/backbones/__init__.py,sha256=oczI7-IyKWyrkM-tIDYIrw01sCVJoWvxrDjvCcVU_vg,301
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+ eva/vision/models/networks/backbones/_utils.py,sha256=sF9y7vRBc1nFLLGmxramzMQmVwf3oiMMI7XcpKDiBss,1660
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+ eva/vision/models/networks/backbones/pathology/gigapath.py,sha256=YTBYSb1KduwYsFOTFzNkzI9-GtjU7UjPLzqPzwIJEvs,970
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+ eva/vision/models/networks/backbones/pathology/histai.py,sha256=vq-sBh63z1dkXa8i0nJeVJM4mnVNvuv0wRG911JjeXI,1941
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+ eva/vision/models/networks/backbones/pathology/kaiko.py,sha256=JNu3s3WOgguP3ccishGU1yCCvikgqhIniFdfHSkwEMA,4592
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+ eva/vision/models/networks/backbones/pathology/owkin.py,sha256=tJ6ZMbtLKfvS__B9Dtb__MT03ZbR3zKLTrCv_Uk1y4c,1258
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+ eva/vision/models/networks/backbones/radiology/swin_unetr.py,sha256=mqoqgc6Zq4tS-wswSe4lKuSEfcPYtpelrqbFqWekOl4,7991
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+ eva/vision/models/networks/backbones/radiology/voco.py,sha256=Rzwbk6nMrjnd71KDLf8uyXntGY0YMTLDkHhzP56p_7Q,2519
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+ eva/vision/models/networks/backbones/registry.py,sha256=ubLPktCXZu_CLTfPk3sO-JzOHSkD6kTYDuyTD12JpeI,109
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+ eva/vision/models/networks/backbones/timm/backbones.py,sha256=ZbF9MMiL4Ylyy79XLew61QxmnH9MPXUHPounzzqOKVc,1638
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+ eva/vision/models/networks/backbones/universal/__init__.py,sha256=xgn3crSqlmUPYz-t2CR1zDKxhlyAEeApA-a6Y_eWQvc,417
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+ eva/vision/models/networks/backbones/universal/vit.py,sha256=To0OzwpuX5Y5PwjGidwV0Ssq3xa81dve081buwG_Ofg,3658
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- eva/vision/models/networks/decoders/segmentation/decoder2d.py,sha256=A7vz0LJ_YweftpKeEBJm0Y3N7hbVLDSIkAajaQv1UgE,4456
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- eva/vision/models/networks/decoders/segmentation/linear.py,sha256=PZeEIH0ybgxgIKtmcflh8jsARo5NQqkgoGbpAZd7yj4,4650
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+ eva/vision/models/networks/decoders/segmentation/decoder2d.py,sha256=HRonYTSriiq13aZCSNiYUc484qfOhkVT0yFiMW06CDc,4472
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+ eva/vision/models/networks/decoders/segmentation/linear.py,sha256=ui3-Y0rl4VEF75-sUghaF29P9wpxCVlp5iR_Ym-utUE,4666
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+ eva/vision/models/networks/decoders/segmentation/semantic/common.py,sha256=FSf_eI-FaBroxPRJd4TiV97RCreauJh1IznIVzBT2eg,2528
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+ eva/vision/models/networks/decoders/segmentation/typings.py,sha256=rY4CXp0MNF16SHnx9TgGjXI_r8bVGSqAWdR835hXndg,537
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+ eva/vision/models/wrappers/from_registry.py,sha256=2vpKTkoa_CGjVLbhnUclstFzDfkXCqMxjdtxTk212HQ,1729
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+ eva/vision/models/wrappers/from_timm.py,sha256=Lkdibly4H_XNjl863YFBj10ZbSTN1onT2Bc6yV072m0,2334
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@@ -246,8 +277,8 @@ eva/vision/utils/io/image.py,sha256=IdOkr5MYqhYHz8U9drZ7wULTM3YHwCWSjZlu_Qdl4GQ,
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- kaiko_eva-0.2.1.dist-info/METADATA,sha256=78-RgtBLumKmrWLlv6Q8iJ6JU-InxPCudfJcuy7pVUQ,24992
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- kaiko_eva-0.2.1.dist-info/WHEEL,sha256=tSfRZzRHthuv7vxpI4aehrdN9scLjk-dCJkPLzkHxGg,90
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- kaiko_eva-0.2.1.dist-info/entry_points.txt,sha256=6CSLu9bmQYJSXEg8gbOzRhxH0AGs75BB-vPm3VvfcNE,88
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- kaiko_eva-0.2.1.dist-info/licenses/LICENSE,sha256=e6AEzr7j_R-PYr2qLO-JwLn8y70jbVD3U2mxbRmwcI4,11338
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- kaiko_eva-0.2.1.dist-info/RECORD,,
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+ kaiko_eva-0.3.0.dist-info/METADATA,sha256=exrabZqdN0O1RDjEDL7PiojP10YCHwUbe0RXb_3RIHE,25688
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+ kaiko_eva-0.3.0.dist-info/WHEEL,sha256=9P2ygRxDrTJz3gsagc0Z96ukrxjr-LFBGOgv3AuKlCA,90
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+ kaiko_eva-0.3.0.dist-info/entry_points.txt,sha256=6CSLu9bmQYJSXEg8gbOzRhxH0AGs75BB-vPm3VvfcNE,88
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+ kaiko_eva-0.3.0.dist-info/licenses/LICENSE,sha256=e6AEzr7j_R-PYr2qLO-JwLn8y70jbVD3U2mxbRmwcI4,11338
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+ kaiko_eva-0.3.0.dist-info/RECORD,,
@@ -1,4 +1,4 @@
1
1
  Wheel-Version: 1.0
2
- Generator: pdm-backend (2.4.4)
2
+ Generator: pdm-backend (2.4.5)
3
3
  Root-Is-Purelib: true
4
4
  Tag: py3-none-any