junifer 0.0.7.dev332__py3-none-any.whl → 0.0.8__py3-none-any.whl

junifer/external/h5io/h5io/_version.py

@@ -1 +0,0 @@
-__version__ = '0.1.7'

junifer/external/h5io/h5io/chunked_array.py

@@ -1,94 +0,0 @@
-"""Provide chunked array class for storing chunked numpy.ndarray in HDF5."""
-
-# Authors: Synchon Mandal <s.mandal@fz-juelich.de>
-#          Federico Raimondo <f.raimondo@fz-juelich.de>
-# License: BSD (3-clause)
-
-from typing import Tuple, Union
-
-import numpy as np
-
-
-class ChunkedArray:
-    """Class for chunked 2D and 3D numpy.ndarray.
-
-    Parameters
-    ----------
-    data : 2D or 3D numpy.ndarray
-        The data to be stored in chunks.
-    shape : tuple of int
-        A tuple of int for (x, t) or triple of int for (x, y, t).
-    chunk_size : tuple of int
-        The tuple or triple of int as chunk size of chunked storage.
-    n_chunk : int
-        The chunk count of chunked storage.
-
-    Notes
-    -----
-    The first one or two dimensions of the ``chunk_size`` and the ``shape``
-    must be the same.
-
-    """
-
-    def __init__(
-        self,
-        data: np.ndarray,
-        shape: Union[Tuple[int, int], Tuple[int, int, int]],
-        chunk_size: Union[Tuple[int, int], Tuple[int, int, int]],
-        n_chunk: int,
-    ) -> None:
-        self.chunkdata = data
-        self.shape = shape
-        self.chunk_size = chunk_size
-        self.n_chunk = n_chunk
-
-        if self.chunkdata.ndim == 2:
-            self._chunk_start = self.n_chunk * self.chunk_size[1]
-            self._chunk_end = (self.n_chunk + 1) * self.chunk_size[1]
-            if self._chunk_end > self.shape[1]:
-                self._chunk_end = self.shape[1]
-
-            if self._chunk_start > self.shape[1]:
-                raise ValueError(
-                    f"The chunk number ({n_chunk}) is too large for the given "
-                    f"shape ({shape})."
-                )
-            t_chunk_size = self._chunk_end - self._chunk_start
-            if t_chunk_size != self.chunkdata.shape[1]:
-                raise ValueError(
-                    f"The chunk size ({t_chunk_size}) does not match the given"
-                    f" data shape ({self.chunkdata.shape})."
-                )
-        elif self.chunkdata.ndim == 3:
-            self._chunk_start = self.n_chunk * self.chunk_size[2]
-            self._chunk_end = (self.n_chunk + 1) * self.chunk_size[2]
-            if self._chunk_end > self.shape[2]:
-                self._chunk_end = self.shape[2]
-
-            if self._chunk_start > self.shape[2]:
-                raise ValueError(
-                    f"The chunk number ({n_chunk}) is too large for the given "
-                    f"shape ({shape})."
-                )
-            t_chunk_size = self._chunk_end - self._chunk_start
-            if t_chunk_size != self.chunkdata.shape[2]:
-                raise ValueError(
-                    f"The chunk size ({chunk_size}) does not match the given "
-                    f"data shape ({self.chunkdata.shape})."
-                )
-
-    @property
-    def chunkslice(self) -> Tuple[slice, slice, slice]:
-        """Return the slice of the chunk to write to the dataset."""
-        if self.chunkdata.ndim == 2:
-            out = (
-                slice(0, self.shape[0], 1),
-                slice(self._chunk_start, self._chunk_end, 1),
-            )
-        elif self.chunkdata.ndim == 3:
-            out = (
-                slice(0, self.shape[0], 1),
-                slice(0, self.shape[1], 1),
-                slice(self._chunk_start, self._chunk_end, 1),
-            )
-        return out

junifer/external/h5io/h5io/chunked_list.py

@@ -1,65 +0,0 @@
-"""Provide chunked list class for storing chunked listsin HDF5."""
-
-# Authors: Synchon Mandal <s.mandal@fz-juelich.de>
-#          Federico Raimondo <f.raimondo@fz-juelich.de>
-# License: BSD (3-clause)
-
-from typing import Tuple, Union, List, Generator
-
-
-class ChunkedList:
-    """Class for chunked lists
-
-    Parameters
-    ----------
-    data : list
-        The portion of the list to store
-    size : int
-        the size of the complete list
-    offset: int
-        The offset of the chunk in the original list
-    """
-
-    def __init__(
-        self,
-        data: List,
-        size: int,
-        offset: int,
-    ) -> None:
-        self.chunkdata = data
-        self.size = size
-        self.offset = offset
-
-        if len(self.chunkdata) > self.size:
-            raise ValueError(
-                f"The length of the chunk ({len(self.chunkdata)}) is too large"
-                f" for the given length ({self.size})."
-            )
-
-        if self.offset < 0:
-            raise ValueError(
-                f"The chunk offset ({self.offset}) must be positive."
-            )
-
-        if self.offset > self.size:
-            raise ValueError(
-                f"The chunk offset ({self.offset}) is too large for the given "
-                f"length ({self.size})."
-            )
-
-        if len(self.chunkdata) + self.offset > self.size:
-            raise ValueError(
-                f"The chunk offset ({self.offset}) is too large for the given "
-                f"length ({self.size}) and chunk data."
-            )
-        
-    @property
-    def chunkrange(self) -> range:
-        """Return the range of the chunk to write to the dataset."""
-        return range(self.offset, self.offset + len(self.chunkdata))
-
-    @property
-    def enumerate(self) -> Generator[Tuple[int, int], None, None]:
-        """Return the range of the chunk to write to the dataset."""
-        for i, x in enumerate(self.chunkdata):
-            yield i + self.offset, x

junifer/markers/complexity/__init__.pyi

@@ -1,17 +0,0 @@
-__all__ = [
-    "HurstExponent",
-    "RangeEntropy",
-    "RangeEntropyAUC",
-    "PermEntropy",
-    "WeightedPermEntropy",
-    "SampleEntropy",
-    "MultiscaleEntropyAUC",
-]
-
-from .hurst_exponent import HurstExponent
-from .range_entropy import RangeEntropy
-from .range_entropy_auc import RangeEntropyAUC
-from .perm_entropy import PermEntropy
-from .weighted_perm_entropy import WeightedPermEntropy
-from .sample_entropy import SampleEntropy
-from .multiscale_entropy_auc import MultiscaleEntropyAUC

junifer-0.0.7.dev332.dist-info/RECORD

@@ -1,353 +0,0 @@
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