junifer 0.0.6.dev538__py3-none-any.whl → 0.0.7.dev43__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- junifer/_version.py +2 -2
- junifer/api/decorators.py +0 -1
- junifer/api/functions.py +1 -2
- junifer/api/queue_context/gnu_parallel_local_adapter.py +4 -7
- junifer/api/queue_context/htcondor_adapter.py +6 -10
- junifer/cli/tests/test_parser.py +66 -0
- junifer/data/_dispatch.py +5 -5
- junifer/data/coordinates/_ants_coordinates_warper.py +1 -1
- junifer/data/coordinates/_coordinates.py +1 -1
- junifer/data/coordinates/_fsl_coordinates_warper.py +1 -1
- junifer/data/coordinates/tests/test_coordinates.py +38 -16
- junifer/data/masks/_ants_mask_warper.py +1 -1
- junifer/data/masks/_fsl_mask_warper.py +1 -1
- junifer/data/masks/tests/test_masks.py +66 -33
- junifer/data/parcellations/_ants_parcellation_warper.py +1 -1
- junifer/data/parcellations/_fsl_parcellation_warper.py +1 -1
- junifer/data/parcellations/_parcellations.py +7 -7
- junifer/data/parcellations/tests/test_parcellations.py +162 -76
- junifer/data/tests/test_data_utils.py +0 -1
- junifer/data/utils.py +1 -1
- junifer/datagrabber/aomic/id1000.py +6 -0
- junifer/datagrabber/aomic/piop1.py +4 -3
- junifer/datagrabber/aomic/piop2.py +4 -3
- junifer/datagrabber/pattern_datalad.py +0 -1
- junifer/datagrabber/pattern_validation_mixin.py +0 -1
- junifer/datagrabber/tests/test_dmcc13_benchmark.py +4 -8
- junifer/external/nilearn/junifer_connectivity_measure.py +32 -3
- junifer/external/nilearn/tests/test_junifer_connectivity_measure.py +45 -1
- junifer/markers/base.py +3 -3
- junifer/markers/brainprint.py +5 -5
- junifer/markers/complexity/multiscale_entropy_auc.py +3 -3
- junifer/markers/complexity/range_entropy.py +3 -3
- junifer/markers/complexity/sample_entropy.py +3 -3
- junifer/markers/falff/falff_parcels.py +2 -6
- junifer/markers/falff/falff_spheres.py +2 -6
- junifer/markers/functional_connectivity/functional_connectivity_base.py +7 -5
- junifer/markers/functional_connectivity/tests/test_functional_connectivity_parcels.py +2 -1
- junifer/markers/functional_connectivity/tests/test_functional_connectivity_spheres.py +2 -1
- junifer/markers/reho/_afni_reho.py +1 -1
- junifer/markers/reho/reho_base.py +0 -1
- junifer/markers/reho/reho_parcels.py +0 -1
- junifer/markers/reho/reho_spheres.py +0 -1
- junifer/markers/temporal_snr/temporal_snr_base.py +0 -1
- junifer/markers/tests/test_markers_base.py +0 -1
- junifer/onthefly/_brainprint.py +3 -3
- junifer/onthefly/read_transform.py +1 -2
- junifer/onthefly/tests/test_read_transform.py +0 -1
- junifer/pipeline/tests/test_marker_collection.py +2 -1
- junifer/pipeline/workdir_manager.py +1 -2
- junifer/preprocess/confounds/fmriprep_confound_remover.py +1 -1
- junifer/preprocess/confounds/tests/test_fmriprep_confound_remover.py +0 -1
- junifer/preprocess/smoothing/tests/test_smoothing.py +0 -1
- junifer/preprocess/warping/_ants_warper.py +2 -3
- junifer/preprocess/warping/_fsl_warper.py +1 -1
- junifer/preprocess/warping/space_warper.py +4 -2
- junifer/storage/pandas_base.py +3 -1
- junifer/storage/sqlite.py +3 -8
- junifer/storage/tests/test_pandas_base.py +6 -3
- junifer/storage/tests/test_storage_base.py +2 -1
- junifer/utils/logging.py +38 -128
- junifer/utils/tests/test_logging.py +12 -4
- {junifer-0.0.6.dev538.dist-info → junifer-0.0.7.dev43.dist-info}/METADATA +3 -2
- {junifer-0.0.6.dev538.dist-info → junifer-0.0.7.dev43.dist-info}/RECORD +68 -91
- {junifer-0.0.6.dev538.dist-info → junifer-0.0.7.dev43.dist-info}/WHEEL +1 -1
- junifer/data/coordinates/VOIs/meta/AutobiographicalMemory_VOIs.txt +0 -23
- junifer/data/coordinates/VOIs/meta/CogAC_VOIs.txt +0 -19
- junifer/data/coordinates/VOIs/meta/CogAR_VOIs.txt +0 -8
- junifer/data/coordinates/VOIs/meta/DMNBuckner_VOIs.txt +0 -6
- junifer/data/coordinates/VOIs/meta/Dosenbach2010_MNI_VOIs.txt +0 -160
- junifer/data/coordinates/VOIs/meta/Empathy_VOIs.txt +0 -22
- junifer/data/coordinates/VOIs/meta/Motor_VOIs.txt +0 -10
- junifer/data/coordinates/VOIs/meta/MultiTask_VOIs.txt +0 -9
- junifer/data/coordinates/VOIs/meta/PhysioStress_VOIs.txt +0 -18
- junifer/data/coordinates/VOIs/meta/Power2011_MNI_VOIs.txt +0 -264
- junifer/data/coordinates/VOIs/meta/Power2013_MNI_VOIs.tsv +0 -264
- junifer/data/coordinates/VOIs/meta/Rew_VOIs.txt +0 -25
- junifer/data/coordinates/VOIs/meta/Somatosensory_VOIs.txt +0 -10
- junifer/data/coordinates/VOIs/meta/ToM_VOIs.txt +0 -15
- junifer/data/coordinates/VOIs/meta/VigAtt_VOIs.txt +0 -16
- junifer/data/coordinates/VOIs/meta/WM_VOIs.txt +0 -23
- junifer/data/coordinates/VOIs/meta/eMDN_VOIs.txt +0 -17
- junifer/data/coordinates/VOIs/meta/eSAD_VOIs.txt +0 -12
- junifer/data/coordinates/VOIs/meta/extDMN_VOIs.txt +0 -16
- junifer/data/masks/ukb/UKB_15K_GM_template.nii.gz +0 -0
- junifer/data/masks/vickery-patil/CAT12_IXI555_MNI152_TMP_GS_GMprob0.2_clean.nii.gz +0 -0
- junifer/data/masks/vickery-patil/CAT12_IXI555_MNI152_TMP_GS_GMprob0.2_clean_3mm.nii.gz +0 -0
- junifer/data/masks/vickery-patil/GMprob0.2_cortex_3mm_NA_rm.nii.gz +0 -0
- {junifer-0.0.6.dev538.dist-info → junifer-0.0.7.dev43.dist-info}/entry_points.txt +0 -0
- {junifer-0.0.6.dev538.dist-info → junifer-0.0.7.dev43.dist-info}/licenses/AUTHORS.rst +0 -0
- {junifer-0.0.6.dev538.dist-info → junifer-0.0.7.dev43.dist-info}/licenses/LICENSE.md +0 -0
- {junifer-0.0.6.dev538.dist-info → junifer-0.0.7.dev43.dist-info}/top_level.txt +0 -0
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-
54 -31 -18 fusiform
|
82
|
-
-41 -37 16 temporal
|
83
|
-
-53 -37 13 temporal
|
84
|
-
28 -37 -15 fusiform
|
85
|
-
-3 -38 45 precuneus
|
86
|
-
34 -39 65 sup parietal
|
87
|
-
8 -40 50 precuneus
|
88
|
-
-41 -40 42 IPL
|
89
|
-
58 -41 20 parietal
|
90
|
-
-8 -41 3 post cingulate
|
91
|
-
-61 -41 -2 inf temporal
|
92
|
-
-28 -42 -11 occipital
|
93
|
-
-5 -43 25 post cingulate
|
94
|
-
9 -43 25 precuneus
|
95
|
-
43 -43 8 temporal
|
96
|
-
54 -44 43 IPL
|
97
|
-
-55 -44 30 parietal
|
98
|
-
-28 -44 -25 lat cerebellum
|
99
|
-
-35 -46 48 post parietal
|
100
|
-
42 -46 21 sup temporal
|
101
|
-
-48 -47 49 IPL
|
102
|
-
-41 -47 29 angular gyrus
|
103
|
-
-59 -47 11 temporal
|
104
|
-
-53 -50 39 IPL
|
105
|
-
5 -50 33 precuneus
|
106
|
-
-18 -50 1 occipital
|
107
|
-
44 -52 47 IPL
|
108
|
-
-5 -52 17 post cingulate
|
109
|
-
-24 -54 -21 lat cerebellum
|
110
|
-
-37 -54 -37 inf cerebellum
|
111
|
-
10 -55 17 post cingulate
|
112
|
-
-6 -56 29 precuneus
|
113
|
-
-34 -57 -24 lat cerebellum
|
114
|
-
-32 -58 46 IPS
|
115
|
-
-11 -58 17 post cingulate
|
116
|
-
32 -59 41 IPS
|
117
|
-
51 -59 34 angular gyrus
|
118
|
-
-34 -60 -5 occipital
|
119
|
-
36 -60 -8 occipital
|
120
|
-
-6 -60 -15 med cerebellum
|
121
|
-
-25 -60 -34 inf cerebellum
|
122
|
-
32 -61 -31 inf cerebellum
|
123
|
-
46 -62 5 temporal
|
124
|
-
-48 -63 35 angular gyrus
|
125
|
-
-52 -63 15 TPJ
|
126
|
-
-44 -63 -7 occipital
|
127
|
-
-16 -64 -21 med cerebellum
|
128
|
-
21 -64 -22 lat cerebellum
|
129
|
-
19 -66 -1 occipital
|
130
|
-
1 -66 -24 med cerebellum
|
131
|
-
-34 -67 -29 inf cerebellum
|
132
|
-
11 -68 42 precuneus
|
133
|
-
17 -68 20 occipital
|
134
|
-
-36 -69 40 IPS
|
135
|
-
39 -71 13 occipital
|
136
|
-
-9 -72 41 occipital
|
137
|
-
45 -72 29 occipital
|
138
|
-
-11 -72 -14 med cerebellum
|
139
|
-
29 -73 29 occipital
|
140
|
-
33 -73 -30 inf cerebellum
|
141
|
-
-2 -75 32 occipital
|
142
|
-
-29 -75 28 occipital
|
143
|
-
5 -75 -11 med cerebellum
|
144
|
-
14 -75 -21 med cerebellum
|
145
|
-
-16 -76 33 occipital
|
146
|
-
-42 -76 26 occipital
|
147
|
-
9 -76 14 occipital
|
148
|
-
15 -77 32 occipital
|
149
|
-
20 -78 -2 occipital
|
150
|
-
-21 -79 -33 inf cerebellum
|
151
|
-
-6 -79 -33 inf cerebellum
|
152
|
-
-5 -80 9 post occipital
|
153
|
-
29 -81 14 post occipital
|
154
|
-
33 -81 -2 post occipital
|
155
|
-
18 -81 -33 inf cerebellum
|
156
|
-
-37 -83 -2 post occipital
|
157
|
-
-29 -88 8 post occipital
|
158
|
-
13 -91 2 post occipital
|
159
|
-
27 -91 2 post occipital
|
160
|
-
-4 -94 12 post occipital
|
@@ -1,22 +0,0 @@
|
|
1
|
-
2.0 56.0 18.0 dmPFC
|
2
|
-
-8.0 54.0 34.0 dmPFC
|
3
|
-
36.0 22.0 -8.0 raI
|
4
|
-
-30.0 20.0 4.0 laI
|
5
|
-
50.0 12.0 -8.0 rIFG
|
6
|
-
54.0 16.0 20.0 rIFG/Area44
|
7
|
-
50.0 30.0 4.0 rIFG/Area45
|
8
|
-
-44.0 24.0 -6.0 lIFG
|
9
|
-
-4.0 18.0 50.0 SMA
|
10
|
-
-2.0 28.0 20.0 aMCC
|
11
|
-
-4.0 42.0 18.0 rACC
|
12
|
-
-2.0 -32.0 28.0 PCC
|
13
|
-
52.0 -58.0 22.0 rTPJ
|
14
|
-
-56.0 -58.0 22.0 lTPJ
|
15
|
-
22.0 -2.0 -16.0 rAm
|
16
|
-
54.0 -8.0 -16.0 rMTG
|
17
|
-
52.0 -36.0 2.0 rpSTS
|
18
|
-
-12.0 -4.0 12.0 laTh
|
19
|
-
6.0 -32.0 2.0 rpTh
|
20
|
-
26.0 -26.0 -12.0 rHippo
|
21
|
-
2.0 -20.0 -12.0 Midbrain
|
22
|
-
14.0 4.0 0.0 rGP
|
@@ -1,18 +0,0 @@
|
|
1
|
-
38.0 18.0 0.0 rIns
|
2
|
-
52.0 12.0 -4.0 rSTG
|
3
|
-
60.0 6.0 2.0 rTP
|
4
|
-
22.0 0.0 -4.0 rPall
|
5
|
-
-38.0 14.0 4.0 lIns
|
6
|
-
-58.0 0.0 6.0 lOP4
|
7
|
-
-20.0 6.0 2.0 lPut
|
8
|
-
4.0 6.0 46.0 rSMA
|
9
|
-
0.0 14.0 36.0 lMCC
|
10
|
-
-42.0 -18.0 18.0 lOP3
|
11
|
-
-54.0 -24.0 24.0 lSMG
|
12
|
-
-36.0 -20.0 2.0 lIns
|
13
|
-
-14.0 -12.0 10.0 lTh
|
14
|
-
10.0 -18.0 4.0 rTh
|
15
|
-
56.0 -24.0 24.0 lSMG
|
16
|
-
44.0 -14.0 16.0 rOP3
|
17
|
-
38.0 50.0 12.0 rMFG
|
18
|
-
-24.0 -66.0 -26.0 lCb
|