junifer 0.0.6.dev51__py3-none-any.whl → 0.0.6.dev88__py3-none-any.whl

junifer/__init__.py

@@ -4,38 +4,7 @@
 #          Synchon Mandal <s.mandal@fz-juelich.de>
 # License: AGPL
 
-from . import (
-    api,
-    cli,
-    configs,
-    data,
-    datagrabber,
-    datareader,
-    markers,
-    pipeline,
-    preprocess,
-    stats,
-    storage,
-    utils,
-    external,
-    onthefly,
-)
-from ._version import __version__
+import lazy_loader as lazy
 
 
-__all__ = [
-    "api",
-    "cli",
-    "configs",
-    "data",
-    "datagrabber",
-    "datareader",
-    "markers",
-    "pipeline",
-    "preprocess",
-    "stats",
-    "storage",
-    "utils",
-    "external",
-    "onthefly",
-]
+__getattr__, __dir__, __all__ = lazy.attach_stub(__name__, __file__)

junifer/__init__.pyi

@@ -0,0 +1,33 @@
+__all__ = [
+    "api",
+    "configs",
+    "data",
+    "datagrabber",
+    "datareader",
+    "markers",
+    "pipeline",
+    "preprocess",
+    "stats",
+    "storage",
+    "utils",
+    "external",
+    "onthefly",
+    "__version__",
+]
+
+from . import (
+    api,
+    configs,
+    data,
+    datagrabber,
+    datareader,
+    markers,
+    pipeline,
+    preprocess,
+    stats,
+    storage,
+    utils,
+    external,
+    onthefly,
+)
+from ._version import __version__

junifer/_version.py

@@ -12,5 +12,5 @@ __version__: str
 __version_tuple__: VERSION_TUPLE
 version_tuple: VERSION_TUPLE
 
-__version__ = version = '0.0.6.dev51'
-__version_tuple__ = version_tuple = (0, 0, 6, 'dev51')
+__version__ = version = '0.0.6.dev88'
+__version_tuple__ = version_tuple = (0, 0, 6, 'dev88')

junifer/api/__init__.py

@@ -4,8 +4,7 @@
 #          Synchon Mandal <s.mandal@fz-juelich.de>
 # License: AGPL
 
-from . import decorators
-from .functions import collect, list_elements, reset, run, queue
+import lazy_loader as lazy
 
 
-__all__ = ["decorators", "collect", "queue", "run", "reset", "list_elements"]
+__getattr__, __dir__, __all__ = lazy.attach_stub(__name__, __file__)

junifer/api/__init__.pyi

@@ -0,0 +1,4 @@
+__all__ = ["decorators", "collect", "queue", "run", "reset", "list_elements"]
+
+from . import decorators
+from .functions import collect, list_elements, reset, run, queue

junifer/api/functions.py

@@ -14,8 +14,7 @@ from typing import Dict, List, Optional, Tuple, Union
 from ..api.queue_context import GnuParallelLocalAdapter, HTCondorAdapter
 from ..datagrabber.base import BaseDataGrabber
 from ..markers.base import BaseMarker
-from ..markers.collection import MarkerCollection
-from ..pipeline import WorkDirManager
+from ..pipeline import MarkerCollection, WorkDirManager
 from ..pipeline.registry import build
 from ..preprocess.base import BasePreprocessor
 from ..storage.base import BaseFeatureStorage

junifer/api/queue_context/__init__.py

@@ -3,9 +3,7 @@
 # Authors: Synchon Mandal <s.mandal@fz-juelich.de>
 # License: AGPL
 
-from .queue_context_adapter import QueueContextAdapter
-from .htcondor_adapter import HTCondorAdapter
-from .gnu_parallel_local_adapter import GnuParallelLocalAdapter
+import lazy_loader as lazy
 
 
-__all__ = ["QueueContextAdapter", "HTCondorAdapter", "GnuParallelLocalAdapter"]
+__getattr__, __dir__, __all__ = lazy.attach_stub(__name__, __file__)

junifer/api/queue_context/__init__.pyi

@@ -0,0 +1,5 @@
+__all__ = ["QueueContextAdapter", "HTCondorAdapter", "GnuParallelLocalAdapter"]
+
+from .queue_context_adapter import QueueContextAdapter
+from .htcondor_adapter import HTCondorAdapter
+from .gnu_parallel_local_adapter import GnuParallelLocalAdapter

junifer/cli/__init__.py

@@ -1,8 +1,9 @@
-"""Junifer CLI."""
+"""Junifer CLI components."""
 
 # Authors: Synchon Mandal <s.mandal@fz-juelich.de>
 # License: AGPL
 
-from .cli import cli
+import lazy_loader as lazy
 
-__all__ = ["cli"]
+
+__getattr__, __dir__, __all__ = lazy.attach_stub(__name__, __file__)

junifer/cli/__init__.pyi

@@ -0,0 +1,3 @@
+__all__ = ["cli"]
+
+from .cli import cli

junifer/cli/cli.py

@@ -28,6 +28,23 @@ from .utils import (
 )
 
 
+__all__ = [
+    "cli",
+    "run",
+    "collect",
+    "queue",
+    "wtf",
+    "selftest",
+    "reset",
+    "list_elements",
+    "setup",
+    "afni_docker",
+    "fsl_docker",
+    "ants_docker",
+    "freesurfer_docker",
+]
+
+
 def _validate_verbose(
     ctx: click.Context, param: str, value: str
 ) -> Union[str, int]:

junifer/cli/tests/test_cli_utils.py

@@ -47,6 +47,7 @@ def test_get_dependency_information_short() -> None:
         "tqdm",
         "templateflow",
         "lapy",
+        "lazy_loader",
         "looseversion",
     ]
 
@@ -76,6 +77,7 @@ def test_get_dependency_information_long() -> None:
         "tqdm",
         "templateflow",
         "lapy",
+        "lazy_loader",
     ]
     for key in dependency_list:
         assert key in dependency_information_keys

junifer/configs/juseless/__init__.py

@@ -3,7 +3,7 @@
 # Authors: Federico Raimondo <f.raimondo@fz-juelich.de>
 # License: AGPL
 
-from . import datagrabbers
+import lazy_loader as lazy
 
 
-__all__ = ["datagrabbers"]
+__getattr__, __dir__, __all__ = lazy.attach_stub(__name__, __file__)

junifer/configs/juseless/__init__.pyi

@@ -0,0 +1,3 @@
+__all__ = ["datagrabbers"]
+
+from . import datagrabbers

junifer/configs/juseless/datagrabbers/__init__.py

@@ -5,17 +5,7 @@
 #          Synchon Mandal <s.mandal@fz-juelich.de>
 # License: AGPL
 
-from .aomic_id1000_vbm import JuselessDataladAOMICID1000VBM
-from .camcan_vbm import JuselessDataladCamCANVBM
-from .ixi_vbm import JuselessDataladIXIVBM
-from .ucla import JuselessUCLA
-from .ukb_vbm import JuselessDataladUKBVBM
+import lazy_loader as lazy
 
 
-__all__ = [
-    "JuselessDataladAOMICID1000VBM",
-    "JuselessDataladCamCANVBM",
-    "JuselessDataladIXIVBM",
-    "JuselessUCLA",
-    "JuselessDataladUKBVBM",
-]
+__getattr__, __dir__, __all__ = lazy.attach_stub(__name__, __file__)

junifer/configs/juseless/datagrabbers/__init__.pyi

@@ -0,0 +1,13 @@
+__all__ = [
+    "JuselessDataladAOMICID1000VBM",
+    "JuselessDataladCamCANVBM",
+    "JuselessDataladIXIVBM",
+    "JuselessUCLA",
+    "JuselessDataladUKBVBM",
+]
+
+from .aomic_id1000_vbm import JuselessDataladAOMICID1000VBM
+from .camcan_vbm import JuselessDataladCamCANVBM
+from .ixi_vbm import JuselessDataladIXIVBM
+from .ucla import JuselessUCLA
+from .ukb_vbm import JuselessDataladUKBVBM

junifer/data/__init__.py

@@ -4,47 +4,7 @@
 #          Synchon Mandal <s.mandal@fz-juelich.de>
 # License: AGPL
 
-from .coordinates import (
-    list_coordinates,
-    load_coordinates,
-    register_coordinates,
-    get_coordinates,
-)
-from .parcellations import (
-    list_parcellations,
-    load_parcellation,
-    register_parcellation,
-    merge_parcellations,
-    get_parcellation,
-)
+import lazy_loader as lazy
 
-from .masks import (
-    list_masks,
-    load_mask,
-    register_mask,
-    get_mask,
-)
 
-from .template_spaces import get_template, get_xfm
-
-from . import utils
-
-
-__all__ = [
-    "list_coordinates",
-    "load_coordinates",
-    "register_coordinates",
-    "get_coordinates",
-    "list_parcellations",
-    "load_parcellation",
-    "register_parcellation",
-    "merge_parcellations",
-    "get_parcellation",
-    "list_masks",
-    "load_mask",
-    "register_mask",
-    "get_mask",
-    "get_template",
-    "get_xfm",
-    "utils",
-]
+__getattr__, __dir__, __all__ = lazy.attach_stub(__name__, __file__)

junifer/data/__init__.pyi

@@ -0,0 +1,43 @@
+__all__ = [
+    "list_coordinates",
+    "load_coordinates",
+    "register_coordinates",
+    "get_coordinates",
+    "list_parcellations",
+    "load_parcellation",
+    "register_parcellation",
+    "merge_parcellations",
+    "get_parcellation",
+    "list_masks",
+    "load_mask",
+    "register_mask",
+    "get_mask",
+    "get_template",
+    "get_xfm",
+    "utils",
+]
+
+from .coordinates import (
+    list_coordinates,
+    load_coordinates,
+    register_coordinates,
+    get_coordinates,
+)
+from .parcellations import (
+    list_parcellations,
+    load_parcellation,
+    register_parcellation,
+    merge_parcellations,
+    get_parcellation,
+)
+
+from .masks import (
+    list_masks,
+    load_mask,
+    register_mask,
+    get_mask,
+)
+
+from .template_spaces import get_template, get_xfm
+
+from . import utils

junifer/datagrabber/__init__.py

@@ -5,31 +5,7 @@
 #          Synchon Mandal <s.mandal@fz-juelich.de>
 # License: AGPL
 
+import lazy_loader as lazy
 
-# These 4 need to be in this order, otherwise it is a circular import
-from .base import BaseDataGrabber
-from .datalad_base import DataladDataGrabber
-from .pattern import PatternDataGrabber
-from .pattern_datalad import PatternDataladDataGrabber
 
-from .aomic import DataladAOMICID1000, DataladAOMICPIOP1, DataladAOMICPIOP2
-from .hcp1200 import HCP1200, DataladHCP1200
-from .multiple import MultipleDataGrabber
-from .dmcc13_benchmark import DMCC13Benchmark
-
-from .pattern_validation_mixin import PatternValidationMixin
-
-__all__ = [
-    "BaseDataGrabber",
-    "DataladDataGrabber",
-    "PatternDataGrabber",
-    "PatternDataladDataGrabber",
-    "DataladAOMICID1000",
-    "DataladAOMICPIOP1",
-    "DataladAOMICPIOP2",
-    "HCP1200",
-    "DataladHCP1200",
-    "MultipleDataGrabber",
-    "DMCC13Benchmark",
-    "PatternValidationMixin",
-]
+__getattr__, __dir__, __all__ = lazy.attach_stub(__name__, __file__)

junifer/datagrabber/__init__.pyi

@@ -0,0 +1,27 @@
+__all__ = [
+    "BaseDataGrabber",
+    "DataladDataGrabber",
+    "PatternDataGrabber",
+    "PatternDataladDataGrabber",
+    "DataladAOMICID1000",
+    "DataladAOMICPIOP1",
+    "DataladAOMICPIOP2",
+    "HCP1200",
+    "DataladHCP1200",
+    "MultipleDataGrabber",
+    "DMCC13Benchmark",
+    "PatternValidationMixin",
+]
+
+# These 4 need to be in this order, otherwise it is a circular import
+from .base import BaseDataGrabber
+from .datalad_base import DataladDataGrabber
+from .pattern import PatternDataGrabber
+from .pattern_datalad import PatternDataladDataGrabber
+
+from .aomic import DataladAOMICID1000, DataladAOMICPIOP1, DataladAOMICPIOP2
+from .hcp1200 import HCP1200, DataladHCP1200
+from .multiple import MultipleDataGrabber
+from .dmcc13_benchmark import DMCC13Benchmark
+
+from .pattern_validation_mixin import PatternValidationMixin

junifer/datagrabber/aomic/__init__.py

@@ -4,9 +4,7 @@
 #          Leonard Sasse <l.sasse@fz-juelich.de>
 # License: AGPL
 
-from .id1000 import DataladAOMICID1000
-from .piop1 import DataladAOMICPIOP1
-from .piop2 import DataladAOMICPIOP2
+import lazy_loader as lazy
 
 
-__all__ = ["DataladAOMICID1000", "DataladAOMICPIOP1", "DataladAOMICPIOP2"]
+__getattr__, __dir__, __all__ = lazy.attach_stub(__name__, __file__)

junifer/datagrabber/aomic/__init__.pyi

@@ -0,0 +1,5 @@
+__all__ = ["DataladAOMICID1000", "DataladAOMICPIOP1", "DataladAOMICPIOP2"]
+
+from .id1000 import DataladAOMICID1000
+from .piop1 import DataladAOMICPIOP1
+from .piop2 import DataladAOMICPIOP2

junifer/datagrabber/hcp1200/__init__.py

@@ -3,8 +3,7 @@
 # Authors: Synchon Mandal <s.mandal@fz-juelich.de>
 # License: AGPL
 
-from .hcp1200 import HCP1200
-from .datalad_hcp1200 import DataladHCP1200
+import lazy_loader as lazy
 
 
-__all__ = ["HCP1200", "DataladHCP1200"]
+__getattr__, __dir__, __all__ = lazy.attach_stub(__name__, __file__)

junifer/datagrabber/hcp1200/__init__.pyi

@@ -0,0 +1,4 @@
+__all__ = ["HCP1200", "DataladHCP1200"]
+
+from .hcp1200 import HCP1200
+from .datalad_hcp1200 import DataladHCP1200

junifer/datareader/__init__.py

@@ -5,7 +5,7 @@
 #          Synchon Mandal <s.mandal@fz-juelich.de>
 # License: AGPL
 
-from .default import DefaultDataReader
+import lazy_loader as lazy
 
 
-__all__ = ["DefaultDataReader"]
+__getattr__, __dir__, __all__ = lazy.attach_stub(__name__, __file__)

junifer/datareader/__init__.pyi

@@ -0,0 +1,3 @@
+__all__ = ["DefaultDataReader"]
+
+from .default import DefaultDataReader

junifer/external/nilearn/__init__.py

@@ -3,8 +3,7 @@
 # Authors: Synchon Mandal <s.mandal@fz-juelich.de>
 # License: AGPL
 
-from .junifer_nifti_spheres_masker import JuniferNiftiSpheresMasker
-from .junifer_connectivity_measure import JuniferConnectivityMeasure
+import lazy_loader as lazy
 
 
-__all__ = ["JuniferNiftiSpheresMasker", "JuniferConnectivityMeasure"]
+__getattr__, __dir__, __all__ = lazy.attach_stub(__name__, __file__)

junifer/external/nilearn/__init__.pyi

@@ -0,0 +1,4 @@
+__all__ = ["JuniferNiftiSpheresMasker", "JuniferConnectivityMeasure"]
+
+from .junifer_nifti_spheres_masker import JuniferNiftiSpheresMasker
+from .junifer_connectivity_measure import JuniferConnectivityMeasure

junifer/markers/__init__.py

@@ -5,43 +5,7 @@
 #          Synchon Mandal <s.mandal@fz-juelich.de>
 # License: AGPL
 
-from .base import BaseMarker
-from .collection import MarkerCollection
-from .ets_rss import RSSETSMarker
-from .parcel_aggregation import ParcelAggregation
-from .sphere_aggregation import SphereAggregation
-from .functional_connectivity import (
-    FunctionalConnectivityParcels,
-    FunctionalConnectivitySpheres,
-    CrossParcellationFC,
-    EdgeCentricFCParcels,
-    EdgeCentricFCSpheres,
-)
-from .reho import ReHoParcels, ReHoSpheres
-from .falff import ALFFParcels, ALFFSpheres
-from .temporal_snr import (
-    TemporalSNRParcels,
-    TemporalSNRSpheres,
-)
-from .brainprint import BrainPrint
+import lazy_loader as lazy
 
 
-__all__ = [
-    "BaseMarker",
-    "MarkerCollection",
-    "RSSETSMarker",
-    "ParcelAggregation",
-    "SphereAggregation",
-    "FunctionalConnectivityParcels",
-    "FunctionalConnectivitySpheres",
-    "CrossParcellationFC",
-    "EdgeCentricFCParcels",
-    "EdgeCentricFCSpheres",
-    "ReHoParcels",
-    "ReHoSpheres",
-    "ALFFParcels",
-    "ALFFSpheres",
-    "TemporalSNRParcels",
-    "TemporalSNRSpheres",
-    "BrainPrint",
-]
+__getattr__, __dir__, __all__ = lazy.attach_stub(__name__, __file__)

junifer/markers/__init__.pyi

@@ -0,0 +1,37 @@
+__all__ = [
+    "BaseMarker",
+    "RSSETSMarker",
+    "ParcelAggregation",
+    "SphereAggregation",
+    "FunctionalConnectivityParcels",
+    "FunctionalConnectivitySpheres",
+    "CrossParcellationFC",
+    "EdgeCentricFCParcels",
+    "EdgeCentricFCSpheres",
+    "ReHoParcels",
+    "ReHoSpheres",
+    "ALFFParcels",
+    "ALFFSpheres",
+    "TemporalSNRParcels",
+    "TemporalSNRSpheres",
+    "BrainPrint",
+]
+
+from .base import BaseMarker
+from .ets_rss import RSSETSMarker
+from .parcel_aggregation import ParcelAggregation
+from .sphere_aggregation import SphereAggregation
+from .functional_connectivity import (
+    FunctionalConnectivityParcels,
+    FunctionalConnectivitySpheres,
+    CrossParcellationFC,
+    EdgeCentricFCParcels,
+    EdgeCentricFCSpheres,
+)
+from .reho import ReHoParcels, ReHoSpheres
+from .falff import ALFFParcels, ALFFSpheres
+from .temporal_snr import (
+    TemporalSNRParcels,
+    TemporalSNRSpheres,
+)
+from .brainprint import BrainPrint

junifer/markers/complexity/__init__.py

@@ -4,7 +4,6 @@
 #          Synchon Mandal <s.mandal@fz-juelich.de>
 # License: AGPL
 
-
 from importlib.util import find_spec
 
 from ..utils import raise_error
@@ -17,21 +16,6 @@ if find_spec("neurokit2") is None:
         klass=ImportError,
     )
 else:
-    # Import markers
-    from .hurst_exponent import HurstExponent
-    from .range_entropy import RangeEntropy
-    from .range_entropy_auc import RangeEntropyAUC
-    from .perm_entropy import PermEntropy
-    from .weighted_perm_entropy import WeightedPermEntropy
-    from .sample_entropy import SampleEntropy
-    from .multiscale_entropy_auc import MultiscaleEntropyAUC
+    import lazy_loader as lazy
 
-    __all__ = [
-        "HurstExponent",
-        "RangeEntropy",
-        "RangeEntropyAUC",
-        "PermEntropy",
-        "WeightedPermEntropy",
-        "SampleEntropy",
-        "MultiscaleEntropyAUC",
-    ]
+    __getattr__, __dir__, __all__ = lazy.attach_stub(__name__, __file__)

junifer/markers/complexity/__init__.pyi

@@ -0,0 +1,17 @@
+__all__ = [
+    "HurstExponent",
+    "RangeEntropy",
+    "RangeEntropyAUC",
+    "PermEntropy",
+    "WeightedPermEntropy",
+    "SampleEntropy",
+    "MultiscaleEntropyAUC",
+]
+
+from .hurst_exponent import HurstExponent
+from .range_entropy import RangeEntropy
+from .range_entropy_auc import RangeEntropyAUC
+from .perm_entropy import PermEntropy
+from .weighted_perm_entropy import WeightedPermEntropy
+from .sample_entropy import SampleEntropy
+from .multiscale_entropy_auc import MultiscaleEntropyAUC

junifer/markers/falff/__init__.py

@@ -3,8 +3,7 @@
 # Authors: Federico Raimondo <f.raimondo@fz-juelich.de>
 # License: AGPL
 
-from .falff_parcels import ALFFParcels
-from .falff_spheres import ALFFSpheres
+import lazy_loader as lazy
 
 
-__all__ = ["ALFFParcels", "ALFFSpheres"]
+__getattr__, __dir__, __all__ = lazy.attach_stub(__name__, __file__)

junifer/markers/falff/__init__.pyi

@@ -0,0 +1,4 @@
+__all__ = ["ALFFParcels", "ALFFSpheres"]
+
+from .falff_parcels import ALFFParcels
+from .falff_spheres import ALFFSpheres