junifer 0.0.6.dev44__py3-none-any.whl → 0.0.6.dev51__py3-none-any.whl

junifer/_version.py

@@ -12,5 +12,5 @@ __version__: str
 __version_tuple__: VERSION_TUPLE
 version_tuple: VERSION_TUPLE
 
-__version__ = version = '0.0.6.dev44'
-__version_tuple__ = version_tuple = (0, 0, 6, 'dev44')
+__version__ = version = '0.0.6.dev51'
+__version_tuple__ = version_tuple = (0, 0, 6, 'dev51')

junifer/cli/parser.py

@@ -18,7 +18,7 @@ from ..utils import logger, raise_error, warn_with_log, yaml
 __all__ = ["parse_yaml", "parse_elements"]
 
 
-def parse_yaml(filepath: Union[str, Path]) -> Dict:
+def parse_yaml(filepath: Union[str, Path]) -> Dict:  # noqa: C901
     """Parse YAML.
 
     Parameters
@@ -65,14 +65,35 @@ def parse_yaml(filepath: Union[str, Path]) -> Dict:
                     raise_error(
                         f"File in 'with' section does not exist: {file_path}"
                     )
+                # Add the parent directory to the sys.path so that the
+                # any imports from this module work correctly
+                t_path = str(file_path.parent)
+                if t_path not in sys.path:
+                    sys.path.append(str(file_path.parent))
+
                 spec = importlib.util.spec_from_file_location(
                     t_module, file_path
                 )
                 module = importlib.util.module_from_spec(spec)  # type: ignore
                 sys.modules[t_module] = module
                 spec.loader.exec_module(module)  # type: ignore
+
                 # Add absolute path to final list
                 final_to_load.append(str(file_path.resolve()))
+
+                # Check if the module has junifer_module_deps function
+                if hasattr(module, "junifer_module_deps"):
+                    logger.debug(
+                        f"Module {t_module} has junifer_module_deps function"
+                    )
+                    # Get the dependencies
+                    deps = module.junifer_module_deps()
+                    # Add the dependencies to the final list
+                    for dep in deps:
+                        if dep not in final_to_load:
+                            final_to_load.append(
+                                str((file_path.parent / dep).resolve())
+                            )
             else:
                 logger.info(f"Importing module: {t_module}")
                 importlib.import_module(t_module)

{junifer-0.0.6.dev44.dist-info → junifer-0.0.6.dev51.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: junifer
-Version: 0.0.6.dev44
+Version: 0.0.6.dev51
 Summary: JUelich NeuroImaging FEature extractoR
 Author-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Synchon Mandal <s.mandal@fz-juelich.de>
 Maintainer-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Synchon Mandal <s.mandal@fz-juelich.de>

{junifer-0.0.6.dev44.dist-info → junifer-0.0.6.dev51.dist-info}/RECORD

@@ -1,5 +1,5 @@
 junifer/__init__.py,sha256=qlrkRK5qZYHkYG6B4tLA7cvrQsgyCunNRv1Oz4FBWlQ,624
-junifer/_version.py,sha256=f_7PpeTq7RhL4LDqP4GsHG_7wtw50-GPyv61VUYab2Y,426
+junifer/_version.py,sha256=wxfrOd7_CEPqj_M0iVbFwX_dk3Cf85sB-l-MFRD_h1o,426
 junifer/stats.py,sha256=BjQb2lfTGDP9l4UuQYmJFcJJNRfbJDGlNvC06SJaDDE,6237
 junifer/api/__init__.py,sha256=JYZLJe8oEnJpNpq0RrhEGP6Tj5GP2DHlixFwJtTcV0Y,324
 junifer/api/decorators.py,sha256=SkQjDYcB_cwG7AS5Q_BU1-T3b38T5RHzbW3aQHP-NzM,2723
@@ -36,7 +36,7 @@ junifer/api/res/fsl/std2imgcoord,sha256=-X5wRH6XMl0yqnTACJX6MFhO8DFOEWg42MHRxGvi
 junifer/api/tests/test_functions.py,sha256=JjtdB_dFnikGdgkhtvzoJsV_jbW0X1cNRqjFk2jJmLI,17747
 junifer/cli/__init__.py,sha256=nrv2l2-t0kLWtNoqmjJKPM0_FP7BvuA_Qc3_GjHBWpM,128
 junifer/cli/cli.py,sha256=8emD8-GZzeXyY6mPw3WUYWllConuzLOZLAacYtNgqJw,12981
-junifer/cli/parser.py,sha256=YxpP-s3Jrpb1_ZepcLN8Gc6S0dbKM_i72RENBLtyLOU,7390
+junifer/cli/parser.py,sha256=oZf0oiFcp7vTTMFmFv9qcIqnKMS5wZSCqBmKggN_F0c,8355
 junifer/cli/utils.py,sha256=uA_MaPuZe8qFxxF0hM5iWNL6rLwbYN2mAPXcWm7YxcM,3140
 junifer/cli/tests/test_cli.py,sha256=DEgjdnGu0r1UmCcu6DavwRuN2i6tZpAs-sYxgoAF7oo,10995
 junifer/cli/tests/test_cli_utils.py,sha256=dGHuH-86_vhvqhEmWsoM2ujT31n6I535OutiafFKoHo,2700
@@ -269,10 +269,10 @@ junifer/utils/logging.py,sha256=ardaiJkDfZMYvak5UIL5Etxg5Ii7inmVQSBdFLdgtb8,9781
 junifer/utils/tests/test_fs.py,sha256=WQS7cKlKEZ742CIuiOYYpueeAhY9PqlastfDVpVVtvE,923
 junifer/utils/tests/test_helpers.py,sha256=k5qqfxK8dFyuewTJyR1Qn6-nFaYNuVr0ysc18bfPjyU,929
 junifer/utils/tests/test_logging.py,sha256=duO4ou365hxwa_kwihFtKPLaL6LC5XHiyhOijrrngbA,8009
-junifer-0.0.6.dev44.dist-info/AUTHORS.rst,sha256=rmULKpchpSol4ExWFdm-qu4fkpSZPYqIESVJBZtGb6E,163
-junifer-0.0.6.dev44.dist-info/LICENSE.md,sha256=MqCnOBu8uXsEOzRZWh9EBVfVz-kE9NkXcLCrtGXo2yU,34354
-junifer-0.0.6.dev44.dist-info/METADATA,sha256=owlzDJooA_9WpQpqgdFERu2iH1uHbXXPUS1wE8Tn48o,8398
-junifer-0.0.6.dev44.dist-info/WHEEL,sha256=cVxcB9AmuTcXqmwrtPhNK88dr7IR_b6qagTj0UvIEbY,91
-junifer-0.0.6.dev44.dist-info/entry_points.txt,sha256=6O8ru0BP-SP7YMUZiizFNoaZ2HvJpadO2G7nKk4PwjI,48
-junifer-0.0.6.dev44.dist-info/top_level.txt,sha256=4bAq1R2QFQ4b3hohjys2JBvxrl0GKk5LNFzYvz9VGcA,8
-junifer-0.0.6.dev44.dist-info/RECORD,,
+junifer-0.0.6.dev51.dist-info/AUTHORS.rst,sha256=rmULKpchpSol4ExWFdm-qu4fkpSZPYqIESVJBZtGb6E,163
+junifer-0.0.6.dev51.dist-info/LICENSE.md,sha256=MqCnOBu8uXsEOzRZWh9EBVfVz-kE9NkXcLCrtGXo2yU,34354
+junifer-0.0.6.dev51.dist-info/METADATA,sha256=6-2OPunBbAYeN-FI86ZEc6XN9VHLKliwndVyE4Y3tPA,8398
+junifer-0.0.6.dev51.dist-info/WHEEL,sha256=GV9aMThwP_4oNCtvEC2ec3qUYutgWeAzklro_0m4WJQ,91
+junifer-0.0.6.dev51.dist-info/entry_points.txt,sha256=6O8ru0BP-SP7YMUZiizFNoaZ2HvJpadO2G7nKk4PwjI,48
+junifer-0.0.6.dev51.dist-info/top_level.txt,sha256=4bAq1R2QFQ4b3hohjys2JBvxrl0GKk5LNFzYvz9VGcA,8
+junifer-0.0.6.dev51.dist-info/RECORD,,

{junifer-0.0.6.dev44.dist-info → junifer-0.0.6.dev51.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: setuptools (74.1.2)
+Generator: setuptools (75.1.0)
 Root-Is-Purelib: true
 Tag: py3-none-any