junifer 0.0.6.dev378__py3-none-any.whl → 0.0.6.dev379__py3-none-any.whl

junifer/_version.py

@@ -12,5 +12,5 @@ __version__: str
 __version_tuple__: VERSION_TUPLE
 version_tuple: VERSION_TUPLE
 
-__version__ = version = '0.0.6.dev378'
-__version_tuple__ = version_tuple = (0, 0, 6, 'dev378')
+__version__ = version = '0.0.6.dev379'
+__version_tuple__ = version_tuple = (0, 0, 6, 'dev379')

junifer/data/masks/_masks.py

@@ -165,6 +165,21 @@ def compute_brain_mask(
         )
 
     mask_name = f"template_{target_std_space}_for_compute_brain_mask"
+
+    # Warp template to correct space (MNI to MNI)
+    if template_space != "native" and template_space != target_std_space:
+        logger.debug(
+            f"Warping template to {target_std_space} space using ANTs."
+        )
+        template = ANTsMaskWarper().warp(
+            mask_name=mask_name,
+            mask_img=template,
+            src=template_space,
+            dst=target_std_space,
+            target_data=target_data,
+            warp_data=None,
+        )
+
     # Resample and warp template if target space is native
     if target_data["space"] == "native" and template_space != "native":
         if warp_data["warper"] == "fsl":
@@ -185,19 +200,6 @@ def compute_brain_mask(
                 warp_data=warp_data,
             )
     else:
-        # Warp template to correct space
-        if template_space != target_std_space:
-            logger.debug(
-                f"Warping template to {target_std_space} space using ANTs."
-            )
-            template = ANTsMaskWarper().warp(
-                mask_name=mask_name,
-                mask_img=template,
-                src=template_space,
-                dst=target_std_space,
-                target_data=target_data,
-                warp_data=None,
-            )
         # Resample template to target image
         resampled_template = nimg.resample_to_img(
             source_img=template,

{junifer-0.0.6.dev378.dist-info → junifer-0.0.6.dev379.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: junifer
-Version: 0.0.6.dev378
+Version: 0.0.6.dev379
 Summary: JUelich NeuroImaging FEature extractoR
 Author-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Synchon Mandal <s.mandal@fz-juelich.de>
 Maintainer-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Synchon Mandal <s.mandal@fz-juelich.de>

{junifer-0.0.6.dev378.dist-info → junifer-0.0.6.dev379.dist-info}/RECORD

@@ -1,6 +1,6 @@
 junifer/__init__.py,sha256=2McgH1yNue6Z1V26-uN_mfMjbTcx4CLhym-DMBl5xA4,266
 junifer/__init__.pyi,sha256=SsTvgq2Dod6UqJN96GH1lCphH6hJQQurEJHGNhHjGUI,508
-junifer/_version.py,sha256=oYfebrtAvhll95HaoOLZCO0IYYGaqQpsY-CgDqPH8w4,428
+junifer/_version.py,sha256=HhdN9ExDOk5GQptlKq1vXbTLsjl26fTtCOnfJ-HdlBE,428
 junifer/conftest.py,sha256=PWYkkRDU8ly2lYwv7VBKMHje4et6HX7Yey3Md_I2KbA,613
 junifer/py.typed,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 junifer/stats.py,sha256=e9aaagMGtgpRfW3Wdpz9ocpnYld1IWylCDcjFUgX9Mk,6225
@@ -106,7 +106,7 @@ junifer/data/masks/__init__.py,sha256=eEEhHglyVEx1LrqwXjq3cOmjf4sTsgBstRx5-k7zIQ
 junifer/data/masks/__init__.pyi,sha256=lcgr8gmWDPibC4RxnWBXb8DDpIkO73Aax09u6VXiJJI,114
 junifer/data/masks/_ants_mask_warper.py,sha256=JLK2Jh2AOAiv_NoUGhRoTBEhRFXPRXTDPmQGH9vBSok,5805
 junifer/data/masks/_fsl_mask_warper.py,sha256=YZOMlRgQ7_4shnXNc_05tmwDk5xHI-1wqle-RdNsJ34,2857
-junifer/data/masks/_masks.py,sha256=ZR0pfwIBiyJ3tGKo0mHW5Pu5asaZHeTvYbgJrUwZh24,28172
+junifer/data/masks/_masks.py,sha256=K-A1cr9TAeVzFPGgn4FUmwIo6LBP0xQb1Q4NW6WTWVo,28166
 junifer/data/masks/tests/test_masks.py,sha256=W0bzRB5Bp-iGO44VtEmaf7BuT-joe_2tQI0lma5NQHA,16090
 junifer/data/masks/ukb/UKB_15K_GM_template.nii.gz,sha256=jcX1pDOrDsoph8cPMNFVKH5gZYio5G4rJNpOFXm9wJI,946636
 junifer/data/masks/vickery-patil/CAT12_IXI555_MNI152_TMP_GS_GMprob0.2_clean.nii.gz,sha256=j6EY8EtRnUuRxeKgD65Q6B0GPEPIALKDJEIje1TfnAU,88270
@@ -341,10 +341,10 @@ junifer/utils/tests/test_config.py,sha256=7ltIXuwb_W4Mv_1dxQWyiyM10XgUAfsWKV6D_i
 junifer/utils/tests/test_fs.py,sha256=WQS7cKlKEZ742CIuiOYYpueeAhY9PqlastfDVpVVtvE,923
 junifer/utils/tests/test_helpers.py,sha256=k5qqfxK8dFyuewTJyR1Qn6-nFaYNuVr0ysc18bfPjyU,929
 junifer/utils/tests/test_logging.py,sha256=duO4ou365hxwa_kwihFtKPLaL6LC5XHiyhOijrrngbA,8009
-junifer-0.0.6.dev378.dist-info/AUTHORS.rst,sha256=rmULKpchpSol4ExWFdm-qu4fkpSZPYqIESVJBZtGb6E,163
-junifer-0.0.6.dev378.dist-info/LICENSE.md,sha256=MqCnOBu8uXsEOzRZWh9EBVfVz-kE9NkXcLCrtGXo2yU,34354
-junifer-0.0.6.dev378.dist-info/METADATA,sha256=1i1ttfHKfKnLZhJQxPgbjBGDS5rw3l7O1R0OtIldFO4,8429
-junifer-0.0.6.dev378.dist-info/WHEEL,sha256=PZUExdf71Ui_so67QXpySuHtCi3-J3wvF4ORK6k_S8U,91
-junifer-0.0.6.dev378.dist-info/entry_points.txt,sha256=6O8ru0BP-SP7YMUZiizFNoaZ2HvJpadO2G7nKk4PwjI,48
-junifer-0.0.6.dev378.dist-info/top_level.txt,sha256=4bAq1R2QFQ4b3hohjys2JBvxrl0GKk5LNFzYvz9VGcA,8
-junifer-0.0.6.dev378.dist-info/RECORD,,
+junifer-0.0.6.dev379.dist-info/AUTHORS.rst,sha256=rmULKpchpSol4ExWFdm-qu4fkpSZPYqIESVJBZtGb6E,163
+junifer-0.0.6.dev379.dist-info/LICENSE.md,sha256=MqCnOBu8uXsEOzRZWh9EBVfVz-kE9NkXcLCrtGXo2yU,34354
+junifer-0.0.6.dev379.dist-info/METADATA,sha256=uDj1UT_o42FUimuI7VbBLM_eNYP_S8OcMFnWeR_AWbY,8429
+junifer-0.0.6.dev379.dist-info/WHEEL,sha256=PZUExdf71Ui_so67QXpySuHtCi3-J3wvF4ORK6k_S8U,91
+junifer-0.0.6.dev379.dist-info/entry_points.txt,sha256=6O8ru0BP-SP7YMUZiizFNoaZ2HvJpadO2G7nKk4PwjI,48
+junifer-0.0.6.dev379.dist-info/top_level.txt,sha256=4bAq1R2QFQ4b3hohjys2JBvxrl0GKk5LNFzYvz9VGcA,8
+junifer-0.0.6.dev379.dist-info/RECORD,,