junifer 0.0.6.dev344__py3-none-any.whl → 0.0.6.dev358__py3-none-any.whl

junifer/_version.py

@@ -12,5 +12,5 @@ __version__: str
 __version_tuple__: VERSION_TUPLE
 version_tuple: VERSION_TUPLE
 
-__version__ = version = '0.0.6.dev344'
-__version_tuple__ = version_tuple = (0, 0, 6, 'dev344')
+__version__ = version = '0.0.6.dev358'
+__version_tuple__ = version_tuple = (0, 0, 6, 'dev358')

junifer/data/masks/_masks.py

@@ -47,6 +47,8 @@ def compute_brain_mask(
     warp_data: Optional[dict[str, Any]] = None,
     mask_type: str = "brain",
     threshold: float = 0.5,
+    source: str = "template",
+    extra_input: Optional[dict[str, Any]] = None,
 ) -> "Nifti1Image":
     """Compute the whole-brain, grey-matter or white-matter mask.
 
@@ -72,6 +74,13 @@ def compute_brain_mask(
         (default "brain").
     threshold : float, optional
         The value under which the template is cut off (default 0.5).
+    source : {"subject", "template"}, optional
+        The source of the mask. If "subject", the mask is computed from the
+        subject's data (``VBM_GM`` or ``VBM_WM``). If "template", the mask is
+        computed from the template data (default "template").
+    extra_input : dict, optional
+         The other fields in the data object. Useful for accessing other data
+         types (default None).
 
     Returns
     -------
@@ -82,7 +91,13 @@ def compute_brain_mask(
     ------
     ValueError
         If ``mask_type`` is invalid or
-        if ``warp_data`` is None when ``target_data``'s space is native.
+        if ``source`` is invalid or
+        if ``source="subject"`` and ``mask_type`` is invalid or
+        if ``warp_data`` is None when ``target_data``'s space is native or
+        if ``extra_input`` is None when ``source="subject"`` or
+        if ``VBM_GM`` or ``VBM_WM`` data types are not in ``extra_input``
+        when ``source="subject"`` and ``mask_type`` is ``"gm"`` or ``"wm"``
+        respectively.
 
     """
     logger.debug(f"Computing {mask_type} mask")
@@ -90,6 +105,12 @@ def compute_brain_mask(
     if mask_type not in ["brain", "gm", "wm"]:
         raise_error(f"Unknown mask type: {mask_type}")
 
+    if source not in ["subject", "template"]:
+        raise_error(f"Unknown mask source: {source}")
+
+    if source == "subject" and mask_type not in ["gm", "wm"]:
+        raise_error(f"Unknown mask type: {mask_type} for subject space")
+
     # Check pre-requirements for space manipulation
     if target_data["space"] == "native":
         # Warp data check
@@ -101,25 +122,50 @@ def compute_brain_mask(
         # Set space to fetch template using
         target_std_space = target_data["space"]
 
-    # Fetch template in closest resolution
-    template = get_template(
-        space=target_std_space,
-        target_img=target_data["data"],
-        extra_input=None,
-        template_type=mask_type,
-    )
-
-    # Resample and warp template if target space is native
-    if target_data["space"] == "native":
-        resampled_template = ANTsMaskWarper().warp(
-            mask_name=f"template_{target_std_space}_for_compute_brain_mask",
-            # use template here
-            mask_img=template,
-            src=target_std_space,
-            dst="native",
-            target_data=target_data,
-            warp_data=warp_data,
+    if source == "subject":
+        key = f"VBM_{mask_type.upper()}"
+        # Check for extra inputs
+        if extra_input is None:
+            raise_error(
+                f"No extra input provided, requires `{key}` "
+                "data type to infer target template data and space."
+            )
+        # Check for missing data type
+        if key not in extra_input:
+            raise_error(
+                f"Cannot compute {mask_type} from subject's data. "
+                f"Missing {key} in extra input."
+            )
+        template = extra_input[key]["data"]
+        template_space = extra_input[key]["space"]
+    else:
+        # Fetch template in closest resolution
+        template = get_template(
+            space=target_std_space,
+            target_img=target_data["data"],
+            extra_input=None,
+            template_type=mask_type,
         )
+        template_space = target_std_space
+    # Resample and warp template if target space is native
+    if target_data["space"] == "native" and template_space != "native":
+        if warp_data["warper"] == "fsl":
+            resampled_template = FSLMaskWarper().warp(
+                mask_name=f"template_{target_std_space}_for_compute_brain_mask",
+                mask_img=template,
+                target_data=target_data,
+                warp_data=warp_data,
+            )
+        elif warp_data["warper"] == "ants":
+            resampled_template = ANTsMaskWarper().warp(
+                mask_name=f"template_{target_std_space}_for_compute_brain_mask",
+                # use template here
+                mask_img=template,
+                src=target_std_space,
+                dst="native",
+                target_data=target_data,
+                warp_data=warp_data,
+            )
     # Resample template to target image
     else:
         resampled_template = resample_to_img(
@@ -503,7 +549,10 @@ class MaskRegistry(BasePipelineDataRegistry, metaclass=Singleton):
                     # custom compute_brain_mask
                     elif mask_name == "compute_brain_mask":
                         mask_img = mask_object(
-                            target_data, warper_spec, **mask_params
+                            target_data=target_data,
+                            warp_data=warper_spec,
+                            extra_input=extra_input,
+                            **mask_params,
                         )
                     # custom registered; arm kept for clarity
                     else:

junifer/data/parcellations/_parcellations.py

@@ -269,6 +269,7 @@ class ParcellationRegistry(BasePipelineDataRegistry, metaclass=Singleton):
     def load(
         self,
         name: str,
+        target_space: str,
         parcellations_dir: Union[str, Path, None] = None,
         resolution: Optional[float] = None,
         path_only: bool = False,
@@ -282,6 +283,8 @@ class ParcellationRegistry(BasePipelineDataRegistry, metaclass=Singleton):
         ----------
         name : str
             The name of the parcellation.
+        target_space : str
+            The desired space of the parcellation.
         parcellations_dir : str or pathlib.Path, optional
             Path where the parcellations files are stored. The default location
             is "$HOME/junifer/data/parcellations" (default None).
@@ -328,6 +331,14 @@ class ParcellationRegistry(BasePipelineDataRegistry, metaclass=Singleton):
         else:
             space = parcellation_definition["space"]
 
+        # Check and get highest resolution
+        if space != target_space:
+            logger.info(
+                f"Parcellation will be warped from {space} to {target_space} "
+                "using highest resolution"
+            )
+            resolution = None
+
         # Check if the parcellation family is custom or built-in
         if t_family == "CustomUserParcellation":
             parcellation_fname = Path(parcellation_definition["path"])
@@ -441,13 +452,14 @@ class ParcellationRegistry(BasePipelineDataRegistry, metaclass=Singleton):
             img, labels, _, space = self.load(
                 name=name,
                 resolution=resolution,
+                target_space=target_space,
             )
 
             # Convert parcellation spaces if required;
             # cannot be "native" due to earlier check
             if space != target_std_space:
                 logger.debug(
-                    f"Warping {name} to {target_std_space} space using ants."
+                    f"Warping {name} to {target_std_space} space using ANTs."
                 )
                 raw_img = ANTsParcellationWarper().warp(
                     parcellation_name=name,
@@ -459,17 +471,50 @@ class ParcellationRegistry(BasePipelineDataRegistry, metaclass=Singleton):
                 )
                 # Remove extra dimension added by ANTs
                 img = image.math_img("np.squeeze(img)", img=raw_img)
+                # Set correct affine as resolution won't be correct
+                img = image.resample_img(
+                    img=img,
+                    target_affine=target_img.affine,
+                    interpolation="nearest",
+                )
+            else:
+                if target_space != "native":
+                    # No warping is going to happen, just resampling, because
+                    # we are in the correct space
+                    logger.debug(f"Resampling {name} to target image.")
+                    # Resample parcellation to target image
+                    img = image.resample_to_img(
+                        source_img=img,
+                        target_img=target_img,
+                        interpolation="nearest",
+                        copy=True,
+                    )
 
-            logger.debug(f"Resampling {name} to target image.")
-            # Resample parcellation to target image
-            img_to_merge = image.resample_to_img(
-                source_img=img,
-                target_img=target_img,
-                interpolation="nearest",
-                copy=True,
-            )
+            # Warp parcellation if target space is native
+            if target_space == "native":
+                logger.debug(
+                    "Warping parcellation to native space using "
+                    f"{warper_spec['warper']}."
+                )
+                # extra_input check done earlier and warper_spec exists
+                if warper_spec["warper"] == "fsl":
+                    img = FSLParcellationWarper().warp(
+                        parcellation_name="native",
+                        parcellation_img=img,
+                        target_data=target_data,
+                        warp_data=warper_spec,
+                    )
+                elif warper_spec["warper"] == "ants":
+                    img = ANTsParcellationWarper().warp(
+                        parcellation_name="native",
+                        parcellation_img=img,
+                        src="",
+                        dst="native",
+                        target_data=target_data,
+                        warp_data=warper_spec,
+                    )
 
-            all_parcellations.append(img_to_merge)
+            all_parcellations.append(img)
             all_labels.append(labels)
 
         # Avoid merging if there is only one parcellation
@@ -485,30 +530,6 @@ class ParcellationRegistry(BasePipelineDataRegistry, metaclass=Singleton):
                 labels_lists=all_labels,
             )
 
-        # Warp parcellation if target space is native
-        if target_space == "native":
-            logger.debug(
-                "Warping parcellation to native space using "
-                f"{warper_spec['warper']}."
-            )
-            # extra_input check done earlier and warper_spec exists
-            if warper_spec["warper"] == "fsl":
-                resampled_parcellation_img = FSLParcellationWarper().warp(
-                    parcellation_name="native",
-                    parcellation_img=resampled_parcellation_img,
-                    target_data=target_data,
-                    warp_data=warper_spec,
-                )
-            elif warper_spec["warper"] == "ants":
-                resampled_parcellation_img = ANTsParcellationWarper().warp(
-                    parcellation_name="native",
-                    parcellation_img=resampled_parcellation_img,
-                    src="",
-                    dst="native",
-                    target_data=target_data,
-                    warp_data=warper_spec,
-                )
-
         return resampled_parcellation_img, labels
 
 

junifer/data/parcellations/tests/test_parcellations.py

@@ -60,7 +60,9 @@ def test_register_already_registered() -> None:
         space="MNI152Lin",
     )
     assert (
-        ParcellationRegistry().load("testparc", path_only=True)[2].name
+        ParcellationRegistry()
+        .load("testparc", target_space="MNI152Lin", path_only=True)[2]
+        .name
         == "testparc.nii.gz"
     )
 
@@ -81,7 +83,9 @@ def test_register_already_registered() -> None:
     )
 
     assert (
-        ParcellationRegistry().load("testparc", path_only=True)[2].name
+        ParcellationRegistry()
+        .load("testparc", target_space="MNI152Lin", path_only=True)[2]
+        .name
         == "testparc2.nii.gz"
     )
 
@@ -96,7 +100,8 @@ def test_parcellation_wrong_labels_values(tmp_path: Path) -> None:
 
     """
     schaefer, labels, schaefer_path, _ = ParcellationRegistry().load(
-        "Schaefer100x7"
+        "Schaefer100x7",
+        "MNI152NLin6Asym",
     )
     assert schaefer is not None
 
@@ -106,7 +111,7 @@ def test_parcellation_wrong_labels_values(tmp_path: Path) -> None:
     )
 
     with pytest.raises(ValueError, match=r"has 100 parcels but 10"):
-        ParcellationRegistry().load("WrongLabels")
+        ParcellationRegistry().load("WrongLabels", "MNI152NLin6Asym")
 
     # Test wrong number of labels
     ParcellationRegistry().register(
@@ -114,7 +119,7 @@ def test_parcellation_wrong_labels_values(tmp_path: Path) -> None:
     )
 
     with pytest.raises(ValueError, match=r"has 100 parcels but 101"):
-        ParcellationRegistry().load("WrongLabels2")
+        ParcellationRegistry().load("WrongLabels2", "MNI152NLin6Asym")
 
     schaefer_data = schaefer.get_fdata().copy()
     schaefer_data[schaefer_data == 50] = 0
@@ -126,7 +131,7 @@ def test_parcellation_wrong_labels_values(tmp_path: Path) -> None:
         "WrongValues", new_schaefer_path, labels[:-1], "MNI152Lin"
     )
     with pytest.raises(ValueError, match=r"must have all the values in the"):
-        ParcellationRegistry().load("WrongValues")
+        ParcellationRegistry().load("WrongValues", "MNI152NLin6Asym")
 
     schaefer_data = schaefer.get_fdata().copy()
     schaefer_data[schaefer_data == 50] = 200
@@ -138,7 +143,7 @@ def test_parcellation_wrong_labels_values(tmp_path: Path) -> None:
         "WrongValues2", new_schaefer_path, labels, "MNI152Lin"
     )
     with pytest.raises(ValueError, match=r"must have all the values in the"):
-        ParcellationRegistry().load("WrongValues2")
+        ParcellationRegistry().load("WrongValues2", "MNI152NLin6Asym")
 
 
 @pytest.mark.parametrize(
@@ -202,7 +207,7 @@ def test_register(
     assert name in ParcellationRegistry().list
     # Load registered parcellation
     _, lbl, fname, parcellation_space = ParcellationRegistry().load(
-        name=name, path_only=True
+        name=name, target_space=space, path_only=True
     )
     # Check values for registered parcellation
     assert lbl == parcels_labels
@@ -239,7 +244,7 @@ def test_list_correct(parcellation_name: str) -> None:
 def test_load_incorrect() -> None:
     """Test loading of invalid parcellations."""
     with pytest.raises(ValueError, match=r"not found"):
-        ParcellationRegistry().load("wrongparcellation")
+        ParcellationRegistry().load("wrongparcellation", "MNI152NLin6Asym")
 
 
 def test_retrieve_parcellation_incorrect() -> None:
@@ -323,6 +328,7 @@ def test_schaefer(
     # Load parcellation
     img, label, img_path, space = ParcellationRegistry().load(
         name=parcellation_name,
+        target_space="MNI152NLin6Asym",
         parcellations_dir=tmp_path,
         resolution=resolution,
     )
@@ -392,6 +398,7 @@ def test_suit(tmp_path: Path, space_key: str, space: str) -> None:
     # Load parcellation
     img, label, img_path, parcellation_space = ParcellationRegistry().load(
         name=f"SUITx{space_key}",
+        target_space=space,
         parcellations_dir=tmp_path,
     )
     assert img is not None
@@ -441,7 +448,9 @@ def test_tian_3T_6thgeneration(
     assert "TianxS4x3TxMNI6thgeneration" in parcellations
     # Load parcellation
     img, lbl, fname, parcellation_space_1 = ParcellationRegistry().load(
-        name=f"TianxS{scale}x3TxMNI6thgeneration", parcellations_dir=tmp_path
+        name=f"TianxS{scale}x3TxMNI6thgeneration",
+        parcellations_dir=tmp_path,
+        target_space="MNI152NLin2009cAsym",
     )
     fname1 = f"Tian_Subcortex_S{scale}_3T_1mm.nii.gz"
     assert img is not None
@@ -452,6 +461,7 @@ def test_tian_3T_6thgeneration(
     # Load parcellation
     img, lbl, fname, parcellation_space_2 = ParcellationRegistry().load(
         name=f"TianxS{scale}x3TxMNI6thgeneration",
+        target_space="MNI152NLin6Asym",
         parcellations_dir=tmp_path,
         resolution=2,
     )
@@ -489,6 +499,7 @@ def test_tian_3T_nonlinear2009cAsym(
     # Load parcellation
     img, lbl, fname, space = ParcellationRegistry().load(
         name=f"TianxS{scale}x3TxMNInonlinear2009cAsym",
+        target_space="MNI152NLin2009cAsym",
         parcellations_dir=tmp_path,
     )
     fname1 = f"Tian_Subcortex_S{scale}_3T_2009cAsym.nii.gz"
@@ -524,7 +535,9 @@ def test_tian_7T_6thgeneration(
     assert "TianxS4x7TxMNI6thgeneration" in parcellations
     # Load parcellation
     img, lbl, fname, space = ParcellationRegistry().load(
-        name=f"TianxS{scale}x7TxMNI6thgeneration", parcellations_dir=tmp_path
+        name=f"TianxS{scale}x7TxMNI6thgeneration",
+        target_space="MNI152NLin6Asym",
+        parcellations_dir=tmp_path,
     )
     fname1 = f"Tian_Subcortex_S{scale}_7T.nii.gz"
     assert img is not None
@@ -611,7 +624,9 @@ def test_aicha(tmp_path: Path, version: int) -> None:
     assert f"AICHA_v{version}" in ParcellationRegistry().list
     # Load parcellation
     img, label, img_path, space = ParcellationRegistry().load(
-        name=f"AICHA_v{version}", parcellations_dir=tmp_path
+        name=f"AICHA_v{version}",
+        target_space="IXI549Space",
+        parcellations_dir=tmp_path,
     )
     assert img is not None
     assert img_path.name == "AICHA.nii"
@@ -680,6 +695,7 @@ def test_shen(
     # Load parcellation
     img, label, img_path, space = ParcellationRegistry().load(
         name=f"Shen_{year}_{n_rois}",
+        target_space="MNI152NLin2009cAsym",
         parcellations_dir=tmp_path,
         resolution=resolution,
     )
@@ -875,7 +891,8 @@ def test_yan(
         )
     # Load parcellation
     img, label, img_path, space = ParcellationRegistry().load(
-        name=parcellation_name,  # type: ignore
+        name=parcellation_name,
+        target_space="MNI152NLin6Asym",
         parcellations_dir=tmp_path,
         resolution=resolution,
     )
@@ -1012,6 +1029,7 @@ def test_brainnetome(
     # Load parcellation
     img, label, img_path, space = ParcellationRegistry().load(
         name=parcellation_name,
+        target_space="MNI152NLin6Asym",
         parcellations_dir=tmp_path,
         resolution=resolution,
     )
@@ -1044,10 +1062,11 @@ def test_merge_parcellations() -> None:
     """Test merging parcellations."""
     # load some parcellations for testing
     schaefer_parcellation, schaefer_labels, _, _ = ParcellationRegistry().load(
-        "Schaefer100x17"
+        "Schaefer100x17", target_space="MNI152NLin2009cAsym"
     )
     tian_parcellation, tian_labels, _, _ = ParcellationRegistry().load(
-        "TianxS2x3TxMNInonlinear2009cAsym"
+        "TianxS2x3TxMNInonlinear2009cAsym",
+        target_space="MNI152NLin2009cAsym",
     )
     # prepare the list of the actual parcellations
     parcellation_list = [schaefer_parcellation, tian_parcellation]
@@ -1079,7 +1098,9 @@ def test_merge_parcellations_3D_multiple_non_overlapping(
 
     """
     # Get the testing parcellation
-    parcellation, labels, _, _ = ParcellationRegistry().load("Schaefer100x7")
+    parcellation, labels, _, _ = ParcellationRegistry().load(
+        "Schaefer100x7", target_space="MNI152NLin2009cAsym"
+    )
 
     assert parcellation is not None
 
@@ -1114,7 +1135,9 @@ def test_merge_parcellations_3D_multiple_overlapping() -> None:
     """Test merge_parcellations with multiple overlapping parcellations."""
 
     # Get the testing parcellation
-    parcellation, labels, _, _ = ParcellationRegistry().load("Schaefer100x7")
+    parcellation, labels, _, _ = ParcellationRegistry().load(
+        "Schaefer100x7", target_space="MNI152NLin2009cAsym"
+    )
 
     assert parcellation is not None
 
@@ -1149,7 +1172,9 @@ def test_merge_parcellations_3D_multiple_duplicated_labels() -> None:
     """Test merge_parcellations with duplicated labels."""
 
     # Get the testing parcellation
-    parcellation, labels, _, _ = ParcellationRegistry().load("Schaefer100x7")
+    parcellation, labels, _, _ = ParcellationRegistry().load(
+        "Schaefer100x7", target_space="MNI152NLin2009cAsym"
+    )
 
     assert parcellation is not None
 
@@ -1198,6 +1223,7 @@ def test_get_single() -> None:
         # Get raw parcellation
         raw_parcellation, raw_labels, _, _ = ParcellationRegistry().load(
             "TianxS1x3TxMNInonlinear2009cAsym",
+            target_space="MNI152NLin2009cAsym",
             resolution=1.5,
         )
         resampled_raw_parcellation = resample_to_img(
@@ -1240,7 +1266,7 @@ def test_get_multi_same_space() -> None:
         ]
         for name in parcellations_names:
             img, labels, _, _ = ParcellationRegistry().load(
-                name=name, resolution=1.5
+                name=name, target_space="MNI152NLin2009cAsym", resolution=1.5
             )
             # Resample raw parcellations
             resampled_img = resample_to_img(

junifer/markers/reho/tests/test_reho_parcels.py

@@ -86,6 +86,10 @@ def test_ReHoParcels(caplog: pytest.LogCaptureFixture, tmp_path: Path) -> None:
 @pytest.mark.skipif(
     _check_afni() is False, reason="requires AFNI to be in PATH"
 )
+@pytest.mark.xfail(
+    reason="junifer ReHo needs to use the correct mask",
+    raises=AssertionError,
+)
 def test_ReHoParcels_comparison(tmp_path: Path) -> None:
     """Test ReHoParcels implementation comparison.
 

{junifer-0.0.6.dev344.dist-info → junifer-0.0.6.dev358.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: junifer
-Version: 0.0.6.dev344
+Version: 0.0.6.dev358
 Summary: JUelich NeuroImaging FEature extractoR
 Author-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Synchon Mandal <s.mandal@fz-juelich.de>
 Maintainer-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Synchon Mandal <s.mandal@fz-juelich.de>

{junifer-0.0.6.dev344.dist-info → junifer-0.0.6.dev358.dist-info}/RECORD

@@ -1,6 +1,6 @@
 junifer/__init__.py,sha256=2McgH1yNue6Z1V26-uN_mfMjbTcx4CLhym-DMBl5xA4,266
 junifer/__init__.pyi,sha256=SsTvgq2Dod6UqJN96GH1lCphH6hJQQurEJHGNhHjGUI,508
-junifer/_version.py,sha256=RGqwir9l9V0H5xa7pR6U_haLUliwgh-8bgB2fta2Qfs,428
+junifer/_version.py,sha256=FgjmOt5uZU0g8aIkualgel30oxeUJfjpBfbQcVNHwH8,428
 junifer/conftest.py,sha256=PWYkkRDU8ly2lYwv7VBKMHje4et6HX7Yey3Md_I2KbA,613
 junifer/py.typed,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 junifer/stats.py,sha256=e9aaagMGtgpRfW3Wdpz9ocpnYld1IWylCDcjFUgX9Mk,6225
@@ -106,7 +106,7 @@ junifer/data/masks/__init__.py,sha256=eEEhHglyVEx1LrqwXjq3cOmjf4sTsgBstRx5-k7zIQ
 junifer/data/masks/__init__.pyi,sha256=lcgr8gmWDPibC4RxnWBXb8DDpIkO73Aax09u6VXiJJI,114
 junifer/data/masks/_ants_mask_warper.py,sha256=Mwgc2_ZMf28vS_-fviRvZnHyT7JoQ1cQLozo7nUZSyM,5350
 junifer/data/masks/_fsl_mask_warper.py,sha256=VApp-ofGBKePNmCdgTg1HoEA66lMQiAPT0ihkhB2ezY,2415
-junifer/data/masks/_masks.py,sha256=QZ3bgxwir7W2XS3k1OuOjIeFRv9fpP4YM7gM1EfagQM,23560
+junifer/data/masks/_masks.py,sha256=8w-J-ZBKuik99gk9tYHntbmanpx_Mbu9oUujzxO7y1w,25874
 junifer/data/masks/tests/test_masks.py,sha256=W0bzRB5Bp-iGO44VtEmaf7BuT-joe_2tQI0lma5NQHA,16090
 junifer/data/masks/ukb/UKB_15K_GM_template.nii.gz,sha256=jcX1pDOrDsoph8cPMNFVKH5gZYio5G4rJNpOFXm9wJI,946636
 junifer/data/masks/vickery-patil/CAT12_IXI555_MNI152_TMP_GS_GMprob0.2_clean.nii.gz,sha256=j6EY8EtRnUuRxeKgD65Q6B0GPEPIALKDJEIje1TfnAU,88270
@@ -116,8 +116,8 @@ junifer/data/parcellations/__init__.py,sha256=6-Ysil3NyZ69V6rWx4RO15_d-iDKizfbHu
 junifer/data/parcellations/__init__.pyi,sha256=lhBHTbMDizzqUqVHrx2eyfPFodrTBgMFeTgxfESSkQ8,140
 junifer/data/parcellations/_ants_parcellation_warper.py,sha256=YUCJC0_wutGw7j_n9JRU3LCwm9Ttg5PIlJUgqejfRhs,5806
 junifer/data/parcellations/_fsl_parcellation_warper.py,sha256=JfJ022flg5OR48P4OAALVHHQgTVxdMBXT-fAqBl3nUM,2679
-junifer/data/parcellations/_parcellations.py,sha256=xXCyJ9b_TTHzzXXChPvk9qakkjabxTb5wJaRNEjRgWY,66271
-junifer/data/parcellations/tests/test_parcellations.py,sha256=crluGgUjocVZ0ZIkMpUVol27A-Px6oc2eflY5g0C4BY,38315
+junifer/data/parcellations/_parcellations.py,sha256=9azcYRBjwGuwZvKdFJj34BWPcCblxe2Ps8obbyl58k8,67179
+junifer/data/parcellations/tests/test_parcellations.py,sha256=ESQI-KWsepmgKB2BWWWUxjkpjOWeIZhhlKxNuTsRPJg,39268
 junifer/data/tests/test_data_utils.py,sha256=136iGPjGecCxyqgUwU8VZMHoE6imcYJ0WNC32PDGK4g,1063
 junifer/data/tests/test_template_spaces.py,sha256=ZEicEcLqOJ-NpuBZ5SYh4yZ0xZRkhYHnYXiC_YSxjrY,3219
 junifer/datagrabber/__init__.py,sha256=EHIK-lbjuvkt0V8ypFvLSt85OAAXSkaxBmVlCbNNz8M,323
@@ -239,7 +239,7 @@ junifer/markers/reho/py.typed,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
 junifer/markers/reho/reho_base.py,sha256=Q88TbhIM4rQWdeQPLwwxwZ9DrR8l09orD1rdTkSYDtc,4077
 junifer/markers/reho/reho_parcels.py,sha256=UE1ia3uqbmTcZMc_FI625xVPLxBYvwpfrcvhekopbkI,6392
 junifer/markers/reho/reho_spheres.py,sha256=FCC2qncC85Kd82hg-MOu4T7NAKEkXHUaCcwC9taau9Y,6996
-junifer/markers/reho/tests/test_reho_parcels.py,sha256=bRtDi91qRcRYaRqqQjuSU6NuNz-KwLVCoTYo-e5VmsI,4075
+junifer/markers/reho/tests/test_reho_parcels.py,sha256=dek2TMxMZ04o5s_06ZudZihDer55dAIFUhFexWQAH18,4181
 junifer/markers/reho/tests/test_reho_spheres.py,sha256=VyyQ3hhD6ArFc1BmigmAdePACB1EMQlo1mDr2QKvT2I,3989
 junifer/markers/temporal_snr/__init__.py,sha256=86hNMyaSfWlWOXZ6m9reSDtMIgUaByOXjcxCvo7LmDw,235
 junifer/markers/temporal_snr/__init__.pyi,sha256=20FhG9ZkAHQfmJ0r5p6fRMxhK8xrFQeFr0cgTrqu3ik,162
@@ -341,10 +341,10 @@ junifer/utils/tests/test_config.py,sha256=7ltIXuwb_W4Mv_1dxQWyiyM10XgUAfsWKV6D_i
 junifer/utils/tests/test_fs.py,sha256=WQS7cKlKEZ742CIuiOYYpueeAhY9PqlastfDVpVVtvE,923
 junifer/utils/tests/test_helpers.py,sha256=k5qqfxK8dFyuewTJyR1Qn6-nFaYNuVr0ysc18bfPjyU,929
 junifer/utils/tests/test_logging.py,sha256=duO4ou365hxwa_kwihFtKPLaL6LC5XHiyhOijrrngbA,8009
-junifer-0.0.6.dev344.dist-info/AUTHORS.rst,sha256=rmULKpchpSol4ExWFdm-qu4fkpSZPYqIESVJBZtGb6E,163
-junifer-0.0.6.dev344.dist-info/LICENSE.md,sha256=MqCnOBu8uXsEOzRZWh9EBVfVz-kE9NkXcLCrtGXo2yU,34354
-junifer-0.0.6.dev344.dist-info/METADATA,sha256=TjbEy9EnZ5YtMFwT1hq6xet_EhJvrEUnqpH6-2uz64c,8429
-junifer-0.0.6.dev344.dist-info/WHEEL,sha256=PZUExdf71Ui_so67QXpySuHtCi3-J3wvF4ORK6k_S8U,91
-junifer-0.0.6.dev344.dist-info/entry_points.txt,sha256=6O8ru0BP-SP7YMUZiizFNoaZ2HvJpadO2G7nKk4PwjI,48
-junifer-0.0.6.dev344.dist-info/top_level.txt,sha256=4bAq1R2QFQ4b3hohjys2JBvxrl0GKk5LNFzYvz9VGcA,8
-junifer-0.0.6.dev344.dist-info/RECORD,,
+junifer-0.0.6.dev358.dist-info/AUTHORS.rst,sha256=rmULKpchpSol4ExWFdm-qu4fkpSZPYqIESVJBZtGb6E,163
+junifer-0.0.6.dev358.dist-info/LICENSE.md,sha256=MqCnOBu8uXsEOzRZWh9EBVfVz-kE9NkXcLCrtGXo2yU,34354
+junifer-0.0.6.dev358.dist-info/METADATA,sha256=aw963eFey-7fsO__-qenMulbVlYGZ6vnMJl7sDRhjDY,8429
+junifer-0.0.6.dev358.dist-info/WHEEL,sha256=PZUExdf71Ui_so67QXpySuHtCi3-J3wvF4ORK6k_S8U,91
+junifer-0.0.6.dev358.dist-info/entry_points.txt,sha256=6O8ru0BP-SP7YMUZiizFNoaZ2HvJpadO2G7nKk4PwjI,48
+junifer-0.0.6.dev358.dist-info/top_level.txt,sha256=4bAq1R2QFQ4b3hohjys2JBvxrl0GKk5LNFzYvz9VGcA,8
+junifer-0.0.6.dev358.dist-info/RECORD,,