junifer 0.0.6.dev299__py3-none-any.whl → 0.0.6.dev308__py3-none-any.whl

junifer/_version.py

@@ -12,5 +12,5 @@ __version__: str
 __version_tuple__: VERSION_TUPLE
 version_tuple: VERSION_TUPLE
 
-__version__ = version = '0.0.6.dev299'
-__version_tuple__ = version_tuple = (0, 0, 6, 'dev299')
+__version__ = version = '0.0.6.dev308'
+__version_tuple__ = version_tuple = (0, 0, 6, 'dev308')

junifer/data/coordinates/_fsl_coordinates_warper.py

@@ -69,7 +69,7 @@ class FSLCoordinatesWarper:
             f"{pretransform_coordinates_path.resolve()}",
             "| img2imgcoord -mm",
             f"-src {target_data['path'].resolve()}",
-            f"-dest {target_data['reference_path'].resolve()}",
+            f"-dest {target_data['reference']['path'].resolve()}",
             f"-warp {warp_data['path'].resolve()}",
             f"> {transformed_coords_path.resolve()};",
             f"sed -i 1d {transformed_coords_path.resolve()}",

junifer/data/masks/_ants_mask_warper.py

@@ -49,9 +49,10 @@ class ANTsMaskWarper:
             It should be empty string if ``dst="T1w"``.
         dst : str
             The data type or template space to warp to.
-            `"T1w"` is the only allowed data type and it uses the resampled T1w
-            found in ``target_data.reference_path``. The ``"reference_path"``
-            key is added when :class:`.SpaceWarper` is used.
+            `"native"` is the only allowed data type and it uses the resampled
+            T1w found in ``target_data.reference``. The
+            ``"reference"`` key is added when :class:`.SpaceWarper` is
+            used or if the data is provided native space.
         target_data : dict
             The corresponding item of the data object to which the mask
             will be applied.
@@ -87,6 +88,10 @@ class ANTsMaskWarper:
             # Warp data check
             if warp_data is None:
                 raise_error("No `warp_data` provided")
+            if "reference" not in target_data:
+                raise_error("No `reference` provided")
+            if "path" not in target_data["reference"]:
+                raise_error("No `path` provided in `reference`")
 
             logger.debug("Using ANTs for mask transformation")
 
@@ -104,7 +109,7 @@ class ANTsMaskWarper:
                 "-n 'GenericLabel[NearestNeighbor]'",
                 f"-i {prewarp_mask_path.resolve()}",
                 # use resampled reference
-                f"-r {target_data['reference_path'].resolve()}",
+                f"-r {target_data['reference']['path'].resolve()}",
                 f"-t {warp_data['path'].resolve()}",
                 f"-o {warped_mask_path.resolve()}",
             ]

junifer/data/masks/_fsl_mask_warper.py

@@ -74,7 +74,7 @@ class FSLMaskWarper:
             "--interp=nn",
             f"-i {prewarp_mask_path.resolve()}",
             # use resampled reference
-            f"-r {target_data['reference_path'].resolve()}",
+            f"-r {target_data['reference']['path'].resolve()}",
             f"-w {warp_data['path'].resolve()}",
             f"-o {warped_mask_path.resolve()}",
         ]

junifer/data/parcellations/_ants_parcellation_warper.py

@@ -50,8 +50,9 @@ class ANTsParcellationWarper:
         dst : str
             The data type or template space to warp to.
             `"T1w"` is the only allowed data type and it uses the resampled T1w
-            found in ``target_data.reference_path``. The ``"reference_path"``
-            key is added when :class:`.SpaceWarper` is used.
+            found in ``target_data.reference``. The ``"reference"``
+            key is added if the :class:`.SpaceWarper` is used or if the
+            data is provided in native space.
         target_data : dict
             The corresponding item of the data object to which the parcellation
             will be applied.
@@ -87,6 +88,10 @@ class ANTsParcellationWarper:
             # Warp data check
             if warp_data is None:
                 raise_error("No `warp_data` provided")
+            if "reference" not in target_data:
+                raise_error("No `reference` provided")
+            if "path" not in target_data["reference"]:
+                raise_error("No `path` provided in `reference`")
 
             logger.debug("Using ANTs for parcellation transformation")
 
@@ -108,7 +113,7 @@ class ANTsParcellationWarper:
                 "-n 'GenericLabel[NearestNeighbor]'",
                 f"-i {prewarp_parcellation_path.resolve()}",
                 # use resampled reference
-                f"-r {target_data['reference_path'].resolve()}",
+                f"-r {target_data['reference']['path'].resolve()}",
                 f"-t {warp_data['path'].resolve()}",
                 f"-o {warped_parcellation_path.resolve()}",
             ]

junifer/data/parcellations/_fsl_parcellation_warper.py

@@ -78,7 +78,7 @@ class FSLParcellationWarper:
             "--interp=nn",
             f"-i {prewarp_parcellation_path.resolve()}",
             # use resampled reference
-            f"-r {target_data['reference_path'].resolve()}",
+            f"-r {target_data['reference']['path'].resolve()}",
             f"-w {warp_data['path'].resolve()}",
             f"-o {warped_parcellation_path.resolve()}",
         ]

junifer/datagrabber/aomic/id1000.py

@@ -11,6 +11,7 @@ from pathlib import Path
 from typing import Union
 
 from ...api.decorators import register_datagrabber
+from ...utils import raise_error
 from ..pattern_datalad import PatternDataladDataGrabber
 
 
@@ -31,8 +32,8 @@ class DataladAOMICID1000(PatternDataladDataGrabber):
            "FreeSurfer"} or list of the options, optional
         AOMIC data types. If None, all available data types are selected.
         (default None).
-    native_t1w : bool, optional
-        Whether to use T1w in native space (default False).
+    space : {"native", "MNI152NLin2009cAsym"}, optional
+        The space to use for the data (default "MNI152NLin2009cAsym").
 
     """
 
@@ -40,25 +41,40 @@ class DataladAOMICID1000(PatternDataladDataGrabber):
         self,
         datadir: Union[str, Path, None] = None,
         types: Union[str, list[str], None] = None,
-        native_t1w: bool = False,
+        space: str = "MNI152NLin2009cAsym",
     ) -> None:
+        valid_spaces = ["native", "MNI152NLin2009cAsym"]
+        if space not in ["native", "MNI152NLin2009cAsym"]:
+            raise_error(
+                f"Invalid space {space}. Must be one of {valid_spaces}"
+            )
+
+        # Descriptor for space in `anat`
+        sp_anat_desc = (
+            "" if space == "native" else "space-MNI152NLin2009cAsym_"
+        )
+        # Descriptor for space in `func`
+        sp_func_desc = (
+            "space-T1w_" if space == "native" else "space-MNI152NLin2009cAsym_"
+        )
         # The patterns
         patterns = {
             "BOLD": {
                 "pattern": (
                     "derivatives/fmriprep/{subject}/func/"
                     "{subject}_task-moviewatching_"
-                    "space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz"
+                    f"{sp_func_desc}"
+                    "desc-preproc_bold.nii.gz"
                 ),
-                "space": "MNI152NLin2009cAsym",
+                "space": space,
                 "mask": {
                     "pattern": (
                         "derivatives/fmriprep/{subject}/func/"
                         "{subject}_task-moviewatching_"
-                        "space-MNI152NLin2009cAsym_"
+                        f"{sp_func_desc}"
                         "desc-brain_mask.nii.gz"
                     ),
-                    "space": "MNI152NLin2009cAsym",
+                    "space": space,
                 },
                 "confounds": {
                     "pattern": (
@@ -68,46 +84,59 @@ class DataladAOMICID1000(PatternDataladDataGrabber):
                     ),
                     "format": "fmriprep",
                 },
+                "reference": {
+                    "pattern": (
+                        "derivatives/fmriprep/{subject}/func/"
+                        "{subject}_task-moviewatching_"
+                        f"{sp_func_desc}"
+                        "boldref.nii.gz"
+                    ),
+                },
             },
             "T1w": {
                 "pattern": (
                     "derivatives/fmriprep/{subject}/anat/"
-                    "{subject}_space-MNI152NLin2009cAsym_"
+                    "{subject}_"
+                    f"{sp_anat_desc}"
                     "desc-preproc_T1w.nii.gz"
                 ),
-                "space": "MNI152NLin2009cAsym",
+                "space": space,
                 "mask": {
                     "pattern": (
                         "derivatives/fmriprep/{subject}/anat/"
-                        "{subject}_space-MNI152NLin2009cAsym_"
+                        "{subject}_"
+                        f"{sp_anat_desc}"
                         "desc-brain_mask.nii.gz"
                     ),
-                    "space": "MNI152NLin2009cAsym",
+                    "space": space,
                 },
             },
             "VBM_CSF": {
                 "pattern": (
                     "derivatives/fmriprep/{subject}/anat/"
-                    "{subject}_space-MNI152NLin2009cAsym_label-"
-                    "CSF_probseg.nii.gz"
+                    "{subject}_"
+                    f"{sp_anat_desc}"
+                    "label-CSF_probseg.nii.gz"
                 ),
-                "space": "MNI152NLin2009cAsym",
+                "space": space,
             },
             "VBM_GM": {
                 "pattern": (
                     "derivatives/fmriprep/{subject}/anat/"
-                    "{subject}_space-MNI152NLin2009cAsym_label-"
-                    "GM_probseg.nii.gz"
+                    "{subject}_"
+                    f"{sp_anat_desc}"
+                    "label-GM_probseg.nii.gz"
                 ),
-                "space": "MNI152NLin2009cAsym",
+                "space": space,
             },
             "VBM_WM": {
                 "pattern": (
                     "derivatives/fmriprep/{subject}/anat/"
-                    "{subject}_space-MNI152NLin2009cAsym_label-"
-                    "WM_probseg.nii.gz"
+                    "{subject}_"
+                    f"{sp_anat_desc}"
+                    "label-WM_probseg.nii.gz"
                 ),
-                "space": "MNI152NLin2009cAsym",
+                "space": space,
             },
             "DWI": {
                 "pattern": (
@@ -148,51 +177,38 @@ class DataladAOMICID1000(PatternDataladDataGrabber):
                     )
                 },
             },
+            "Warp": [
+                {
+                    "pattern": (
+                        "derivatives/fmriprep/{subject}/anat/"
+                        "{subject}_from-MNI152NLin2009cAsym_to-T1w_"
+                        "mode-image_xfm.h5"
+                    ),
+                    "src": "MNI152NLin2009cAsym",
+                    "dst": "native",
+                    "warper": "ants",
+                },
+                {
+                    "pattern": (
+                        "derivatives/fmriprep/{subject}/anat/"
+                        "{subject}_from-T1w_to-MNI152NLin2009cAsym_"
+                        "mode-image_xfm.h5"
+                    ),
+                    "src": "native",
+                    "dst": "MNI152NLin2009cAsym",
+                    "warper": "ants",
+                },
+            ],
         }
+        if space == "native":
+            patterns["BOLD"]["prewarp_space"] = "MNI152NLin2009cAsym"
+
+        else:
+            patterns["BOLD"]["prewarp_space"] = "native"
+
         # Use native T1w assets
-        self.native_t1w = False
-        if native_t1w:
-            self.native_t1w = True
-            patterns.update(
-                {
-                    "T1w": {
-                        "pattern": (
-                            "derivatives/fmriprep/{subject}/anat/"
-                            "{subject}_desc-preproc_T1w.nii.gz"
-                        ),
-                        "space": "native",
-                        "mask": {
-                            "pattern": (
-                                "derivatives/fmriprep/{subject}/anat/"
-                                "{subject}_desc-brain_mask.nii.gz"
-                            ),
-                            "space": "native",
-                        },
-                    },
-                    "Warp": [
-                        {
-                            "pattern": (
-                                "derivatives/fmriprep/{subject}/anat/"
-                                "{subject}_from-MNI152NLin2009cAsym_to-T1w_"
-                                "mode-image_xfm.h5"
-                            ),
-                            "src": "MNI152NLin2009cAsym",
-                            "dst": "native",
-                            "warper": "ants",
-                        },
-                        {
-                            "pattern": (
-                                "derivatives/fmriprep/{subject}/anat/"
-                                "{subject}_from-T1w_to-MNI152NLin2009cAsym_"
-                                "mode-image_xfm.h5"
-                            ),
-                            "src": "native",
-                            "dst": "MNI152NLin2009cAsym",
-                            "warper": "ants",
-                        },
-                    ],
-                }
-            )
+        self.space = space
+
         # Set default types
         if types is None:
             types = list(patterns.keys())

junifer/datagrabber/aomic/piop1.py

@@ -37,8 +37,8 @@ class DataladAOMICPIOP1(PatternDataladDataGrabber):
             "gstroop", "workingmemory"} or list of the options, optional
         AOMIC PIOP1 task sessions. If None, all available task sessions are
         selected (default None).
-    native_t1w : bool, optional
-        Whether to use T1w in native space (default False).
+    space : {"native", "MNI152NLin2009cAsym"}, optional
+        The space to use for the data (default "MNI152NLin2009cAsym").
 
     Raises
     ------
@@ -52,8 +52,13 @@ class DataladAOMICPIOP1(PatternDataladDataGrabber):
         datadir: Union[str, Path, None] = None,
         types: Union[str, list[str], None] = None,
         tasks: Union[str, list[str], None] = None,
-        native_t1w: bool = False,
+        space: str = "MNI152NLin2009cAsym",
     ) -> None:
+        valid_spaces = ["native", "MNI152NLin2009cAsym"]
+        if space not in ["native", "MNI152NLin2009cAsym"]:
+            raise_error(
+                f"Invalid space {space}. Must be one of {valid_spaces}"
+            )
         # Declare all tasks
         all_tasks = [
             "restingstate",
@@ -78,22 +83,32 @@ class DataladAOMICPIOP1(PatternDataladDataGrabber):
                         " dataset!"
                     )
         self.tasks = tasks
+        # Descriptor for space in `anat`
+        sp_anat_desc = (
+            "" if space == "native" else "space-MNI152NLin2009cAsym_"
+        )
+        # Descriptor for space in `func`
+        sp_func_desc = (
+            "space-T1w_" if space == "native" else "space-MNI152NLin2009cAsym_"
+        )
         # The patterns
         patterns = {
             "BOLD": {
                 "pattern": (
                     "derivatives/fmriprep/{subject}/func/"
                     "{subject}_task-{task}_"
-                    "space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz"
+                    f"{sp_func_desc}"
+                    "desc-preproc_bold.nii.gz"
                 ),
-                "space": "MNI152NLin2009cAsym",
+                "space": space,
                 "mask": {
                     "pattern": (
                         "derivatives/fmriprep/{subject}/func/"
                         "{subject}_task-{task}_"
-                        "space-MNI152NLin2009cAsym_desc-brain_mask.nii.gz"
+                        f"{sp_func_desc}"
+                        "desc-brain_mask.nii.gz"
                     ),
-                    "space": "MNI152NLin2009cAsym",
+                    "space": space,
                 },
                 "confounds": {
                     "pattern": (
@@ -103,46 +118,59 @@ class DataladAOMICPIOP1(PatternDataladDataGrabber):
                     ),
                     "format": "fmriprep",
                 },
+                "reference": {
+                    "pattern": (
+                        "derivatives/fmriprep/{subject}/func/"
+                        "{subject}_task-{task}_"
+                        f"{sp_func_desc}"
+                        "boldref.nii.gz"
+                    ),
+                },
             },
             "T1w": {
                 "pattern": (
                     "derivatives/fmriprep/{subject}/anat/"
-                    "{subject}_space-MNI152NLin2009cAsym_"
+                    "{subject}_"
+                    f"{sp_anat_desc}"
                     "desc-preproc_T1w.nii.gz"
                 ),
-                "space": "MNI152NLin2009cAsym",
+                "space": space,
                 "mask": {
                     "pattern": (
                         "derivatives/fmriprep/{subject}/anat/"
-                        "{subject}_space-MNI152NLin2009cAsym_"
+                        "{subject}_"
+                        f"{sp_anat_desc}"
                         "desc-brain_mask.nii.gz"
                     ),
-                    "space": "MNI152NLin2009cAsym",
+                    "space": space,
                 },
             },
             "VBM_CSF": {
                 "pattern": (
                     "derivatives/fmriprep/{subject}/anat/"
-                    "{subject}_space-MNI152NLin2009cAsym_label-"
-                    "CSF_probseg.nii.gz"
+                    "{subject}_"
+                    f"{sp_anat_desc}"
+                    "label-CSF_probseg.nii.gz"
                 ),
-                "space": "MNI152NLin2009cAsym",
+                "space": space,
             },
             "VBM_GM": {
                 "pattern": (
                     "derivatives/fmriprep/{subject}/anat/"
-                    "{subject}_space-MNI152NLin2009cAsym_label-"
-                    "GM_probseg.nii.gz"
+                    "{subject}_"
+                    f"{sp_anat_desc}"
+                    "label-GM_probseg.nii.gz"
                 ),
-                "space": "MNI152NLin2009cAsym",
+                "space": space,
             },
             "VBM_WM": {
                 "pattern": (
                     "derivatives/fmriprep/{subject}/anat/"
-                    "{subject}_space-MNI152NLin2009cAsym_label-"
-                    "WM_probseg.nii.gz"
+                    "{subject}_"
+                    f"{sp_anat_desc}"
+                    "label-WM_probseg.nii.gz"
                 ),
-                "space": "MNI152NLin2009cAsym",
+                "space": space,
             },
             "DWI": {
                 "pattern": (
@@ -183,51 +211,38 @@ class DataladAOMICPIOP1(PatternDataladDataGrabber):
                     )
                 },
             },
+            "Warp": [
+                {
+                    "pattern": (
+                        "derivatives/fmriprep/{subject}/anat/"
+                        "{subject}_from-MNI152NLin2009cAsym_to-T1w_"
+                        "mode-image_xfm.h5"
+                    ),
+                    "src": "MNI152NLin2009cAsym",
+                    "dst": "native",
+                    "warper": "ants",
+                },
+                {
+                    "pattern": (
+                        "derivatives/fmriprep/{subject}/anat/"
+                        "{subject}_from-T1w_to-MNI152NLin2009cAsym_"
+                        "mode-image_xfm.h5"
+                    ),
+                    "src": "native",
+                    "dst": "MNI152NLin2009cAsym",
+                    "warper": "ants",
+                },
+            ],
         }
+
+        if space == "native":
+            patterns["BOLD"]["prewarp_space"] = "MNI152NLin2009cAsym"
+        else:
+            patterns["BOLD"]["prewarp_space"] = "native"
+
         # Use native T1w assets
-        self.native_t1w = False
-        if native_t1w:
-            self.native_t1w = True
-            patterns.update(
-                {
-                    "T1w": {
-                        "pattern": (
-                            "derivatives/fmriprep/{subject}/anat/"
-                            "{subject}_desc-preproc_T1w.nii.gz"
-                        ),
-                        "space": "native",
-                        "mask": {
-                            "pattern": (
-                                "derivatives/fmriprep/{subject}/anat/"
-                                "{subject}_desc-brain_mask.nii.gz"
-                            ),
-                            "space": "native",
-                        },
-                    },
-                    "Warp": [
-                        {
-                            "pattern": (
-                                "derivatives/fmriprep/{subject}/anat/"
-                                "{subject}_from-MNI152NLin2009cAsym_to-T1w_"
-                                "mode-image_xfm.h5"
-                            ),
-                            "src": "MNI152NLin2009cAsym",
-                            "dst": "native",
-                            "warper": "ants",
-                        },
-                        {
-                            "pattern": (
-                                "derivatives/fmriprep/{subject}/anat/"
-                                "{subject}_from-T1w_to-MNI152NLin2009cAsym_"
-                                "mode-image_xfm.h5"
-                            ),
-                            "src": "native",
-                            "dst": "MNI152NLin2009cAsym",
-                            "warper": "ants",
-                        },
-                    ],
-                }
-            )
+        self.space = space
+
         # Set default types
         if types is None:
             types = list(patterns.keys())

junifer/datagrabber/aomic/piop2.py

@@ -37,8 +37,8 @@ class DataladAOMICPIOP2(PatternDataladDataGrabber):
             list of the options, optional
         AOMIC PIOP2 task sessions. If None, all available task sessions are
         selected (default None).
-    native_t1w : bool, optional
-        Whether to use T1w in native space (default False).
+    space : {"native", "MNI152NLin2009cAsym"}, optional
+        The space to use for the data (default "MNI152NLin2009cAsym").
 
     Raises
     ------
@@ -52,8 +52,13 @@ class DataladAOMICPIOP2(PatternDataladDataGrabber):
         datadir: Union[str, Path, None] = None,
         types: Union[str, list[str], None] = None,
         tasks: Union[str, list[str], None] = None,
-        native_t1w: bool = False,
+        space: str = "MNI152NLin2009cAsym",
     ) -> None:
+        valid_spaces = ["native", "MNI152NLin2009cAsym"]
+        if space not in ["native", "MNI152NLin2009cAsym"]:
+            raise_error(
+                f"Invalid space {space}. Must be one of {valid_spaces}"
+            )
         # Declare all tasks
         all_tasks = [
             "restingstate",
@@ -76,22 +81,32 @@ class DataladAOMICPIOP2(PatternDataladDataGrabber):
                         " dataset!"
                     )
         self.tasks = tasks
+        # Descriptor for space in `anat`
+        sp_anat_desc = (
+            "" if space == "native" else "space-MNI152NLin2009cAsym_"
+        )
+        # Descriptor for space in `func`
+        sp_func_desc = (
+            "space-T1w_" if space == "native" else "space-MNI152NLin2009cAsym_"
+        )
         # The patterns
         patterns = {
             "BOLD": {
                 "pattern": (
                     "derivatives/fmriprep/{subject}/func/"
                     "{subject}_task-{task}_"
-                    "space-MNI152NLin2009cAsym_desc-preproc_bold.nii.gz"
+                    f"{sp_func_desc}"
+                    "desc-preproc_bold.nii.gz"
                 ),
-                "space": "MNI152NLin2009cAsym",
+                "space": space,
                 "mask": {
                     "pattern": (
                         "derivatives/fmriprep/{subject}/func/"
                         "{subject}_task-{task}_"
-                        "space-MNI152NLin2009cAsym_desc-brain_mask.nii.gz"
+                        f"{sp_func_desc}"
+                        "desc-brain_mask.nii.gz"
                     ),
-                    "space": "MNI152NLin2009cAsym",
+                    "space": space,
                 },
                 "confounds": {
                     "pattern": (
@@ -101,46 +116,59 @@ class DataladAOMICPIOP2(PatternDataladDataGrabber):
                     ),
                     "format": "fmriprep",
                 },
+                "reference": {
+                    "pattern": (
+                        "derivatives/fmriprep/{subject}/func/"
+                        "{subject}_task-{task}_"
+                        f"{sp_func_desc}"
+                        "boldref.nii.gz"
+                    ),
+                },
             },
             "T1w": {
                 "pattern": (
                     "derivatives/fmriprep/{subject}/anat/"
-                    "{subject}_space-MNI152NLin2009cAsym_"
+                    "{subject}_"
+                    f"{sp_anat_desc}"
                     "desc-preproc_T1w.nii.gz"
                 ),
-                "space": "MNI152NLin2009cAsym",
+                "space": space,
                 "mask": {
                     "pattern": (
                         "derivatives/fmriprep/{subject}/anat/"
-                        "{subject}_space-MNI152NLin2009cAsym_"
+                        "{subject}_"
+                        f"{sp_anat_desc}"
                         "desc-brain_mask.nii.gz"
                     ),
-                    "space": "MNI152NLin2009cAsym",
+                    "space": space,
                 },
             },
             "VBM_CSF": {
                 "pattern": (
                     "derivatives/fmriprep/{subject}/anat/"
-                    "{subject}_space-MNI152NLin2009cAsym_label-"
-                    "CSF_probseg.nii.gz"
+                    "{subject}_"
+                    f"{sp_anat_desc}"
+                    "label-CSF_probseg.nii.gz"
                 ),
-                "space": "MNI152NLin2009cAsym",
+                "space": space,
             },
             "VBM_GM": {
                 "pattern": (
                     "derivatives/fmriprep/{subject}/anat/"
-                    "{subject}_space-MNI152NLin2009cAsym_label-"
-                    "GM_probseg.nii.gz"
+                    "{subject}_"
+                    f"{sp_anat_desc}"
+                    "label-GM_probseg.nii.gz"
                 ),
-                "space": "MNI152NLin2009cAsym",
+                "space": space,
             },
             "VBM_WM": {
                 "pattern": (
                     "derivatives/fmriprep/{subject}/anat/"
-                    "{subject}_space-MNI152NLin2009cAsym_label-"
-                    "WM_probseg.nii.gz"
+                    "{subject}_"
+                    f"{sp_anat_desc}"
+                    "label-WM_probseg.nii.gz"
                 ),
-                "space": "MNI152NLin2009cAsym",
+                "space": space,
             },
             "DWI": {
                 "pattern": (
@@ -181,51 +209,38 @@ class DataladAOMICPIOP2(PatternDataladDataGrabber):
                     )
                 },
             },
+            "Warp": [
+                {
+                    "pattern": (
+                        "derivatives/fmriprep/{subject}/anat/"
+                        "{subject}_from-MNI152NLin2009cAsym_to-T1w_"
+                        "mode-image_xfm.h5"
+                    ),
+                    "src": "MNI152NLin2009cAsym",
+                    "dst": "native",
+                    "warper": "ants",
+                },
+                {
+                    "pattern": (
+                        "derivatives/fmriprep/{subject}/anat/"
+                        "{subject}_from-T1w_to-MNI152NLin2009cAsym_"
+                        "mode-image_xfm.h5"
+                    ),
+                    "src": "native",
+                    "dst": "MNI152NLin2009cAsym",
+                    "warper": "ants",
+                },
+            ],
         }
+
+        if space == "native":
+            patterns["BOLD"]["prewarp_space"] = "MNI152NLin2009cAsym"
+        else:
+            patterns["BOLD"]["prewarp_space"] = "native"
+
         # Use native T1w assets
-        self.native_t1w = False
-        if native_t1w:
-            self.native_t1w = True
-            patterns.update(
-                {
-                    "T1w": {
-                        "pattern": (
-                            "derivatives/fmriprep/{subject}/anat/"
-                            "{subject}_desc-preproc_T1w.nii.gz"
-                        ),
-                        "space": "native",
-                        "mask": {
-                            "pattern": (
-                                "derivatives/fmriprep/{subject}/anat/"
-                                "{subject}_desc-brain_mask.nii.gz"
-                            ),
-                            "space": "native",
-                        },
-                    },
-                    "Warp": [
-                        {
-                            "pattern": (
-                                "derivatives/fmriprep/{subject}/anat/"
-                                "{subject}_from-MNI152NLin2009cAsym_to-T1w_"
-                                "mode-image_xfm.h5"
-                            ),
-                            "src": "MNI152NLin2009cAsym",
-                            "dst": "native",
-                            "warper": "ants",
-                        },
-                        {
-                            "pattern": (
-                                "derivatives/fmriprep/{subject}/anat/"
-                                "{subject}_from-T1w_to-MNI152NLin2009cAsym_"
-                                "mode-image_xfm.h5"
-                            ),
-                            "src": "native",
-                            "dst": "MNI152NLin2009cAsym",
-                            "warper": "ants",
-                        },
-                    ],
-                }
-            )
+        self.space = space
+
         # Set default types
         if types is None:
             types = list(patterns.keys())

junifer/datagrabber/aomic/tests/test_id1000.py

@@ -18,20 +18,25 @@ URI = "https://gin.g-node.org/juaml/datalad-example-aomic1000"
 
 
 @pytest.mark.parametrize(
-    "type_, nested_types",
+    "type_, nested_types, space",
     [
-        ("BOLD", ["confounds", "mask"]),
-        ("T1w", ["mask"]),
-        ("VBM_CSF", None),
-        ("VBM_GM", None),
-        ("VBM_WM", None),
-        ("DWI", None),
-        ("FreeSurfer", None),
+        ("BOLD", ["confounds", "mask", "reference"], "MNI152NLin2009cAsym"),
+        ("BOLD", ["confounds", "mask", "reference"], "native"),
+        ("T1w", ["mask"], "MNI152NLin2009cAsym"),
+        ("T1w", ["mask"], "native"),
+        ("VBM_CSF", None, "MNI152NLin2009cAsym"),
+        ("VBM_CSF", None, "native"),
+        ("VBM_GM", None, "MNI152NLin2009cAsym"),
+        ("VBM_GM", None, "native"),
+        ("VBM_WM", None, "MNI152NLin2009cAsym"),
+        ("DWI", None, "MNI152NLin2009cAsym"),
+        ("FreeSurfer", None, "MNI152NLin2009cAsym"),
     ],
 )
 def test_DataladAOMICID1000(
     type_: str,
     nested_types: Optional[list[str]],
+    space: str,
 ) -> None:
     """Test DataladAOMICID1000 DataGrabber.
 
@@ -41,9 +46,11 @@ def test_DataladAOMICID1000(
         The parametrized type.
     nested_types : list of str or None
         The parametrized nested types.
+    space: str
+        The parametrized space.
 
     """
-    dg = DataladAOMICID1000(types=type_)
+    dg = DataladAOMICID1000(types=type_, space=space)
     # Set URI to Gin
     dg.uri = URI
 

junifer/datagrabber/aomic/tests/test_piop1.py

@@ -18,30 +18,62 @@ URI = "https://gin.g-node.org/juaml/datalad-example-aomicpiop1"
 
 
 @pytest.mark.parametrize(
-    "type_, nested_types, tasks",
+    "type_, nested_types, tasks, space",
     [
-        ("BOLD", ["confounds", "mask"], None),
-        ("BOLD", ["confounds", "mask"], ["anticipation"]),
-        ("BOLD", ["confounds", "mask"], ["emomatching", "faces"]),
-        ("BOLD", ["confounds", "mask"], ["restingstate"]),
-        ("BOLD", ["confounds", "mask"], ["workingmemory", "gstroop"]),
         (
             "BOLD",
-            ["confounds", "mask"],
+            ["confounds", "mask", "reference"],
+            None,
+            "MNI152NLin2009cAsym",
+        ),
+        ("BOLD", ["confounds", "mask", "reference"], None, "native"),
+        (
+            "BOLD",
+            ["confounds", "mask", "reference"],
+            ["anticipation"],
+            "MNI152NLin2009cAsym",
+        ),
+        (
+            "BOLD",
+            ["confounds", "mask", "reference"],
+            ["emomatching", "faces"],
+            "MNI152NLin2009cAsym",
+        ),
+        (
+            "BOLD",
+            ["confounds", "mask", "reference"],
+            ["restingstate"],
+            "MNI152NLin2009cAsym",
+        ),
+        (
+            "BOLD",
+            ["confounds", "mask", "reference"],
+            ["workingmemory", "gstroop"],
+            "MNI152NLin2009cAsym",
+        ),
+        (
+            "BOLD",
+            ["confounds", "mask", "reference"],
             ["anticipation", "faces", "restingstate"],
+            "MNI152NLin2009cAsym",
         ),
-        ("T1w", ["mask"], None),
-        ("VBM_CSF", None, None),
-        ("VBM_GM", None, None),
-        ("VBM_WM", None, None),
-        ("DWI", None, None),
-        ("FreeSurfer", None, None),
+        ("T1w", ["mask"], None, "MNI152NLin2009cAsym"),
+        ("T1w", ["mask"], None, "native"),
+        ("VBM_CSF", None, None, "MNI152NLin2009cAsym"),
+        ("VBM_CSF", None, None, "native"),
+        ("VBM_GM", None, None, "MNI152NLin2009cAsym"),
+        ("VBM_GM", None, None, "native"),
+        ("VBM_WM", None, None, "MNI152NLin2009cAsym"),
+        ("VBM_WM", None, None, "native"),
+        ("DWI", None, None, "MNI152NLin2009cAsym"),
+        ("FreeSurfer", None, None, "MNI152NLin2009cAsym"),
     ],
 )
 def test_DataladAOMICPIOP1(
     type_: str,
     nested_types: Optional[list[str]],
     tasks: Optional[list[str]],
+    space: str,
 ) -> None:
     """Test DataladAOMICPIOP1 DataGrabber.
 
@@ -53,9 +85,11 @@ def test_DataladAOMICPIOP1(
         The parametrized nested types.
     tasks : list of str or None
         The parametrized task values.
+    space: str
+        The parametrized space.
 
     """
-    dg = DataladAOMICPIOP1(types=type_, tasks=tasks)
+    dg = DataladAOMICPIOP1(types=type_, tasks=tasks, space=space)
     # Set URI to Gin
     dg.uri = URI
 

junifer/datagrabber/aomic/tests/test_piop2.py

@@ -18,25 +18,56 @@ URI = "https://gin.g-node.org/juaml/datalad-example-aomicpiop2"
 
 
 @pytest.mark.parametrize(
-    "type_, nested_types, tasks",
+    "type_, nested_types, tasks, space",
     [
-        ("BOLD", ["confounds", "mask"], None),
-        ("BOLD", ["confounds", "mask"], ["restingstate"]),
-        ("BOLD", ["confounds", "mask"], ["restingstate", "stopsignal"]),
-        ("BOLD", ["confounds", "mask"], ["workingmemory", "stopsignal"]),
-        ("BOLD", ["confounds", "mask"], ["workingmemory"]),
-        ("T1w", ["mask"], None),
-        ("VBM_CSF", None, None),
-        ("VBM_GM", None, None),
-        ("VBM_WM", None, None),
-        ("DWI", None, None),
-        ("FreeSurfer", None, None),
+        (
+            "BOLD",
+            ["confounds", "mask", "reference"],
+            None,
+            "MNI152NLin2009cAsym",
+        ),
+        ("BOLD", ["confounds", "mask", "reference"], None, "native"),
+        (
+            "BOLD",
+            ["confounds", "mask", "reference"],
+            ["restingstate"],
+            "MNI152NLin2009cAsym",
+        ),
+        (
+            "BOLD",
+            ["confounds", "mask", "reference"],
+            ["restingstate", "stopsignal"],
+            "MNI152NLin2009cAsym",
+        ),
+        (
+            "BOLD",
+            ["confounds", "mask", "reference"],
+            ["workingmemory", "stopsignal"],
+            "MNI152NLin2009cAsym",
+        ),
+        (
+            "BOLD",
+            ["confounds", "mask", "reference"],
+            ["workingmemory"],
+            "MNI152NLin2009cAsym",
+        ),
+        ("T1w", ["mask"], None, "MNI152NLin2009cAsym"),
+        ("T1w", ["mask"], None, "native"),
+        ("VBM_CSF", None, None, "MNI152NLin2009cAsym"),
+        ("VBM_CSF", None, None, "native"),
+        ("VBM_GM", None, None, "MNI152NLin2009cAsym"),
+        ("VBM_GM", None, None, "native"),
+        ("VBM_WM", None, None, "MNI152NLin2009cAsym"),
+        ("VBM_WM", None, None, "native"),
+        ("DWI", None, None, "MNI152NLin2009cAsym"),
+        ("FreeSurfer", None, None, "MNI152NLin2009cAsym"),
     ],
 )
 def test_DataladAOMICPIOP2(
     type_: str,
     nested_types: Optional[list[str]],
     tasks: Optional[list[str]],
+    space: str,
 ) -> None:
     """Test DataladAOMICPIOP2 DataGrabber.
 
@@ -48,9 +79,11 @@ def test_DataladAOMICPIOP2(
         The parametrized nested types.
     tasks : list of str or None
         The parametrized task values.
+    space: str
+        The parametrized space.
 
     """
-    dg = DataladAOMICPIOP2(types=type_, tasks=tasks)
+    dg = DataladAOMICPIOP2(types=type_, tasks=tasks, space=space)
     # Set URI to Gin
     dg.uri = URI
 

junifer/datagrabber/pattern_validation_mixin.py

@@ -33,6 +33,8 @@ PATTERNS_SCHEMA = {
                 "mandatory": ["pattern", "format"],
                 "optional": ["mappings"],
             },
+            "reference": {"mandatory": ["pattern"], "optional": []},
+            "prewarp_space": {"mandatory": [], "optional": []},
         },
     },
     "Warp": {

junifer/preprocess/warping/_ants_warper.py

@@ -59,7 +59,7 @@ class ANTsWarper:
         -------
         dict
             The ``input`` dictionary with modified ``data`` and ``space`` key
-            values and new ``reference_path`` key whose value points to the
+            values and new ``reference`` key whose value points to the
             reference file used for warping.
 
         Raises
@@ -129,7 +129,7 @@ class ANTsWarper:
             # Load nifti
             input["data"] = nib.load(apply_transforms_out_path)
             # Save resampled reference path
-            input["reference_path"] = resample_image_out_path
+            input["reference"] = {"path": resample_image_out_path}
             # Keep pre-warp space for further operations
             input["prewarp_space"] = input["space"]
             # Use reference input's space as warped input's space

junifer/preprocess/warping/_fsl_warper.py

@@ -55,7 +55,7 @@ class FSLWarper:
         -------
         dict
             The ``input`` dictionary with modified ``data`` and ``space`` key
-            values and new ``reference_path`` key whose value points to the
+            values and new ``reference`` key whose value points to the
             reference file used for warping.
 
         Raises
@@ -116,7 +116,7 @@ class FSLWarper:
         # Load nifti
         input["data"] = nib.load(applywarp_out_path)
         # Save resampled reference path
-        input["reference_path"] = flirt_out_path
+        input["reference"] = {"path": flirt_out_path}
         # Keep pre-warp space for further operations
         input["prewarp_space"] = input["space"]
         # Use reference input's space as warped input's space

{junifer-0.0.6.dev299.dist-info → junifer-0.0.6.dev308.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: junifer
-Version: 0.0.6.dev299
+Version: 0.0.6.dev308
 Summary: JUelich NeuroImaging FEature extractoR
 Author-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Synchon Mandal <s.mandal@fz-juelich.de>
 Maintainer-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Synchon Mandal <s.mandal@fz-juelich.de>

{junifer-0.0.6.dev299.dist-info → junifer-0.0.6.dev308.dist-info}/RECORD

@@ -1,6 +1,6 @@
 junifer/__init__.py,sha256=2McgH1yNue6Z1V26-uN_mfMjbTcx4CLhym-DMBl5xA4,266
 junifer/__init__.pyi,sha256=SsTvgq2Dod6UqJN96GH1lCphH6hJQQurEJHGNhHjGUI,508
-junifer/_version.py,sha256=725_F3dOAgOL9Sw-MMC-B_RSYBVTStBAyk4cmIorMWI,428
+junifer/_version.py,sha256=H1lAQuMfnPLlrYE3J2W2AiMLCvFAEUxmTJeuUTBOiq0,428
 junifer/conftest.py,sha256=PWYkkRDU8ly2lYwv7VBKMHje4et6HX7Yey3Md_I2KbA,613
 junifer/py.typed,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 junifer/stats.py,sha256=e9aaagMGtgpRfW3Wdpz9ocpnYld1IWylCDcjFUgX9Mk,6225
@@ -81,7 +81,7 @@ junifer/data/coordinates/__init__.py,sha256=ffM8rwcHLgHAWixJbKrATrbUKzX940V1UF6R
 junifer/data/coordinates/__init__.pyi,sha256=Z-Ti5XD3HigkZ8uYN6oYsLqw40-F1GvTVQ5QAy08Wng,88
 junifer/data/coordinates/_ants_coordinates_warper.py,sha256=5RWDC-nI3VG9lkSJ-_y_hlDtjPctKSJokQOp3v8ozwY,2956
 junifer/data/coordinates/_coordinates.py,sha256=fBXVvuTxYLTNBSrQiTCiQsxpT0SdbQze3DYuGGgz_mY,12501
-junifer/data/coordinates/_fsl_coordinates_warper.py,sha256=GI0SrkNyAuRsoRSxI5WNvQmtPXQ3MlXvPx9lrd3NYB4,2406
+junifer/data/coordinates/_fsl_coordinates_warper.py,sha256=5h7rwiPMYBQlA3sMZUImcpnNLLWvIp2-bAEaaHtzX9c,2409
 junifer/data/coordinates/VOIs/meta/AutobiographicalMemory_VOIs.txt,sha256=9af38naeL18Tlt_gy_ep6vyTAxOB336JYjbo5FvP8PQ,686
 junifer/data/coordinates/VOIs/meta/CogAC_VOIs.txt,sha256=Sr5_E712OLdeQRyUcDNM0wLBvZIyO6gc9Q7KkyJHX1A,398
 junifer/data/coordinates/VOIs/meta/CogAR_VOIs.txt,sha256=t3NLwEVUZTPP34p15SaB3UInLrQyK-7Qc4iLBuQlZu8,189
@@ -104,8 +104,8 @@ junifer/data/coordinates/VOIs/meta/extDMN_VOIs.txt,sha256=Ogx1QvqZcnXDM3ncF2ha78
 junifer/data/coordinates/tests/test_coordinates.py,sha256=_c2P4oaDGpsmui5gJBe_jN6HLGiKxONkYPR69sRBUlU,4219
 junifer/data/masks/__init__.py,sha256=eEEhHglyVEx1LrqwXjq3cOmjf4sTsgBstRx5-k7zIQU,180
 junifer/data/masks/__init__.pyi,sha256=lcgr8gmWDPibC4RxnWBXb8DDpIkO73Aax09u6VXiJJI,114
-junifer/data/masks/_ants_mask_warper.py,sha256=yGjC-b6Ui-MpPG3FpRnI8pEAxjMUfSSuUGVIeazjN7I,5078
-junifer/data/masks/_fsl_mask_warper.py,sha256=_7UkX3-wFXQs4KwxopO-QjMyB6aeq1GAkiGSGpG-OzM,2412
+junifer/data/masks/_ants_mask_warper.py,sha256=6ex2jxxKI5yA4G1rebSpcAYGGisflVK-DwhtUtWY964,5348
+junifer/data/masks/_fsl_mask_warper.py,sha256=VApp-ofGBKePNmCdgTg1HoEA66lMQiAPT0ihkhB2ezY,2415
 junifer/data/masks/_masks.py,sha256=96NKsSSosD6r03Jb2N1xQoyOc2Vl5miokcQdSeuM6SY,20729
 junifer/data/masks/tests/test_masks.py,sha256=1Zm09ZSdUlR278DTCZeVuxuQntryefsnYYPP02MttVE,16120
 junifer/data/masks/ukb/UKB_15K_GM_template.nii.gz,sha256=jcX1pDOrDsoph8cPMNFVKH5gZYio5G4rJNpOFXm9wJI,946636
@@ -114,8 +114,8 @@ junifer/data/masks/vickery-patil/CAT12_IXI555_MNI152_TMP_GS_GMprob0.2_clean_3mm.
 junifer/data/masks/vickery-patil/GMprob0.2_cortex_3mm_NA_rm.nii.gz,sha256=jfMe_4H9XEnArYms5bSQbqS2V1_HbLHTfI5amQa_Pes,8700
 junifer/data/parcellations/__init__.py,sha256=6-Ysil3NyZ69V6rWx4RO15_d-iDKizfbHuxSjsHNt24,188
 junifer/data/parcellations/__init__.pyi,sha256=lhBHTbMDizzqUqVHrx2eyfPFodrTBgMFeTgxfESSkQ8,140
-junifer/data/parcellations/_ants_parcellation_warper.py,sha256=UBjO9W8jWcM8GK80pbIzORir60ZFAhLTttGtaaDNT2g,5530
-junifer/data/parcellations/_fsl_parcellation_warper.py,sha256=pUsLbR34Ry3e_0_5KxngI-jU06YmXTU795k-SjJHmig,2676
+junifer/data/parcellations/_ants_parcellation_warper.py,sha256=4CYieBer6ow4i8o4NjKsfufc96XdtsMGwfBbMF-Kw78,5802
+junifer/data/parcellations/_fsl_parcellation_warper.py,sha256=JfJ022flg5OR48P4OAALVHHQgTVxdMBXT-fAqBl3nUM,2679
 junifer/data/parcellations/_parcellations.py,sha256=uOqoucoynv--iEftrhdnOd3jBcqq9PSDgs9DYhbeN24,65611
 junifer/data/parcellations/tests/test_parcellations.py,sha256=crluGgUjocVZ0ZIkMpUVol27A-Px6oc2eflY5g0C4BY,38315
 junifer/data/tests/test_data_utils.py,sha256=136iGPjGecCxyqgUwU8VZMHoE6imcYJ0WNC32PDGK4g,1063
@@ -128,17 +128,17 @@ junifer/datagrabber/dmcc13_benchmark.py,sha256=VMyiwvkr4qSvzBICSksPPKOI2w_WVo06H
 junifer/datagrabber/multiple.py,sha256=4tCOzojs3hoG7daHJJ7HUsx15atWR5nTmyP0S0__aig,6666
 junifer/datagrabber/pattern.py,sha256=UwJQ0MObBIS6eHH9FfoM_sBYuNM9n5NAX7DA0HdtL1A,18709
 junifer/datagrabber/pattern_datalad.py,sha256=QPWXIToYHDU4mvm9lz_hy8BjdqqoCXiGiJKCcATrT-w,4568
-junifer/datagrabber/pattern_validation_mixin.py,sha256=MlcQIDyPHtqPcq1eHkwvrp-m5MhZaxTG1l2j3JM6FOc,19236
+junifer/datagrabber/pattern_validation_mixin.py,sha256=6IlL5EMbr-XEtiiXs_buD3DJkujjs335BmAgAiWGZ3M,19369
 junifer/datagrabber/py.typed,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 junifer/datagrabber/aomic/__init__.py,sha256=ATxzXq9NBPmWowTMuL77zqrmIbbnk0Wd1iXtXCP3XDg,266
 junifer/datagrabber/aomic/__init__.pyi,sha256=Rp6C075fZDdKY8VIq508_g4NhVj8bWzR6zb9yln761Q,189
-junifer/datagrabber/aomic/id1000.py,sha256=9jjsb6SRSgxbuMFLJRQBlXaoP9JptyBpveEyWKmsjCA,7814
-junifer/datagrabber/aomic/piop1.py,sha256=AvqtvdL2iUfvXQTWt7BydYKVZ_sS3rp__2M6DbG8_r0,10226
-junifer/datagrabber/aomic/piop2.py,sha256=FyibCxPnaM-w1v3M5FrKHDMXTp-lpBnnuHL7ta-9Xqk,9887
+junifer/datagrabber/aomic/id1000.py,sha256=GNURDZUBqystS2fn9COtIJkDfUVkwsS2uBuVcZQArqc,7931
+junifer/datagrabber/aomic/piop1.py,sha256=johUxDm4rS0QOH9JwotxzVYOWeTrVAdfXuHnkE-o7TI,10329
+junifer/datagrabber/aomic/piop2.py,sha256=JxZqX6i_Jrj3evcxnblSdmWqS2bV5XxoIGhAUoSs8o4,9990
 junifer/datagrabber/aomic/py.typed,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-junifer/datagrabber/aomic/tests/test_id1000.py,sha256=wie7Sc6MIpMyIbDMouXJ7r2_BRbdQv27rTsviwE19LE,3277
-junifer/datagrabber/aomic/tests/test_piop1.py,sha256=_NargKRI13PPtznpNhknOqlKLHlVgVWWVU7GFBeV3X8,4814
-junifer/datagrabber/aomic/tests/test_piop2.py,sha256=7ySdDKI7lioXAN6QVkefScNDNPrUM3lTL7IhGMJatVA,4160
+junifer/datagrabber/aomic/tests/test_id1000.py,sha256=N8jnL5bERP1N_DqNsbH_QeO-aQy8kBym1LihBrAYCsA,3708
+junifer/datagrabber/aomic/tests/test_piop1.py,sha256=8-vdcx2X4QraJV8PAaVwHsoul3kMu1QpLKR9naPMwiQ,5798
+junifer/datagrabber/aomic/tests/test_piop2.py,sha256=vGd43XzcqNXRy_usAJF803S_P-MwcyLHpOz7WA04EN0,5096
 junifer/datagrabber/hcp1200/__init__.py,sha256=2CUYsdWu3RbOdHWME_peYNHEqKUkiq_W3Aw-aczbFdY,214
 junifer/datagrabber/hcp1200/__init__.pyi,sha256=2ttZanYSzCsB195_xfXUyztPsVIF02ARM-sjlNK3Wdg,114
 junifer/datagrabber/hcp1200/datalad_hcp1200.py,sha256=49kWPrjLnmUKzJNYPbV9SD0g5KkkCLXlVVpkYRxwkow,2457
@@ -294,8 +294,8 @@ junifer/preprocess/smoothing/tests/test_smoothing.py,sha256=t1j3zEvJk5XLO4fzcb-w
 junifer/preprocess/tests/test_preprocess_base.py,sha256=-0rpe8QjqYES36H6MHuDs3cv_6upHBdVHnFMgQsmEX4,2571
 junifer/preprocess/warping/__init__.py,sha256=rzUUP7-6H_nygQ7a7TBZ4_RY7p0ELacosYsWQbSdVZk,214
 junifer/preprocess/warping/__init__.pyi,sha256=Drbqp8N3uprvXcKSxqdfj90fesz9XYVLgivhPnKAYcc,65
-junifer/preprocess/warping/_ants_warper.py,sha256=oJrTW_YG-VJ-piq_L1CX5fEoERyRtsMpFEQQ-0fUFMg,6502
-junifer/preprocess/warping/_fsl_warper.py,sha256=IV_vkn3TGDPWM_N-hEQv1YC4LYMTfZfDmuYu5MW_TQ8,3798
+junifer/preprocess/warping/_ants_warper.py,sha256=BHfweLDtq3J8NmgUFvA7bfWIN4kDvo0RiB1fNDJ71qw,6502
+junifer/preprocess/warping/_fsl_warper.py,sha256=yilHysV9t9bkBDK_eQzjROzlwhXStVzflCaEkxkwjlY,3798
 junifer/preprocess/warping/py.typed,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 junifer/preprocess/warping/space_warper.py,sha256=mf7SDu574R3TXNt82fqGl_hcEYx7SjXwz2TcmWObHQA,7706
 junifer/preprocess/warping/tests/test_space_warper.py,sha256=amFHtt-q7L7v9uL4cOvrmHEbUOGDhmoMHkLnKJ0dF7A,5543
@@ -341,10 +341,10 @@ junifer/utils/tests/test_config.py,sha256=7ltIXuwb_W4Mv_1dxQWyiyM10XgUAfsWKV6D_i
 junifer/utils/tests/test_fs.py,sha256=WQS7cKlKEZ742CIuiOYYpueeAhY9PqlastfDVpVVtvE,923
 junifer/utils/tests/test_helpers.py,sha256=k5qqfxK8dFyuewTJyR1Qn6-nFaYNuVr0ysc18bfPjyU,929
 junifer/utils/tests/test_logging.py,sha256=duO4ou365hxwa_kwihFtKPLaL6LC5XHiyhOijrrngbA,8009
-junifer-0.0.6.dev299.dist-info/AUTHORS.rst,sha256=rmULKpchpSol4ExWFdm-qu4fkpSZPYqIESVJBZtGb6E,163
-junifer-0.0.6.dev299.dist-info/LICENSE.md,sha256=MqCnOBu8uXsEOzRZWh9EBVfVz-kE9NkXcLCrtGXo2yU,34354
-junifer-0.0.6.dev299.dist-info/METADATA,sha256=BJYB-ABLfZGsNi7s6U-r36VN0lNHYn83wbqsdQX-DbU,8429
-junifer-0.0.6.dev299.dist-info/WHEEL,sha256=PZUExdf71Ui_so67QXpySuHtCi3-J3wvF4ORK6k_S8U,91
-junifer-0.0.6.dev299.dist-info/entry_points.txt,sha256=6O8ru0BP-SP7YMUZiizFNoaZ2HvJpadO2G7nKk4PwjI,48
-junifer-0.0.6.dev299.dist-info/top_level.txt,sha256=4bAq1R2QFQ4b3hohjys2JBvxrl0GKk5LNFzYvz9VGcA,8
-junifer-0.0.6.dev299.dist-info/RECORD,,
+junifer-0.0.6.dev308.dist-info/AUTHORS.rst,sha256=rmULKpchpSol4ExWFdm-qu4fkpSZPYqIESVJBZtGb6E,163
+junifer-0.0.6.dev308.dist-info/LICENSE.md,sha256=MqCnOBu8uXsEOzRZWh9EBVfVz-kE9NkXcLCrtGXo2yU,34354
+junifer-0.0.6.dev308.dist-info/METADATA,sha256=E06Q8HoVhLuu6L6jlWIfIuy4SsTeMH2gqL8w5BZsXB0,8429
+junifer-0.0.6.dev308.dist-info/WHEEL,sha256=PZUExdf71Ui_so67QXpySuHtCi3-J3wvF4ORK6k_S8U,91
+junifer-0.0.6.dev308.dist-info/entry_points.txt,sha256=6O8ru0BP-SP7YMUZiizFNoaZ2HvJpadO2G7nKk4PwjI,48
+junifer-0.0.6.dev308.dist-info/top_level.txt,sha256=4bAq1R2QFQ4b3hohjys2JBvxrl0GKk5LNFzYvz9VGcA,8
+junifer-0.0.6.dev308.dist-info/RECORD,,