junifer 0.0.6.dev252__py3-none-any.whl → 0.0.6.dev258__py3-none-any.whl

junifer/_version.py

@@ -12,5 +12,5 @@ __version__: str
 __version_tuple__: VERSION_TUPLE
 version_tuple: VERSION_TUPLE
 
-__version__ = version = '0.0.6.dev252'
-__version_tuple__ = version_tuple = (0, 0, 6, 'dev252')
+__version__ = version = '0.0.6.dev258'
+__version_tuple__ = version_tuple = (0, 0, 6, 'dev258')

junifer/data/coordinates/_ants_coordinates_warper.py

@@ -55,19 +55,24 @@ class ANTsCoordinatesWarper:
 
         # Save existing coordinates to a tempfile
         pretransform_coordinates_path = (
-            element_tempdir / "pretransform_coordinates.txt"
+            element_tempdir / "pretransform_coordinates.csv"
         )
+        # Convert LPS to RAS
+        seeds[:, 0] *= -1
+        seeds[:, 1] *= -1
         np.savetxt(
             pretransform_coordinates_path,
             seeds,
             delimiter=",",
             # Add header while saving to make ANTs work
             header="x,y,z",
+            # Remove comment tag for header
+            comments="",
         )
 
         # Create a tempfile for transformed coordinates output
         transformed_coords_path = (
-            element_tempdir / "coordinates_transformed.txt"
+            element_tempdir / "coordinates_transformed.csv"
         )
         # Set antsApplyTransformsToPoints command
         apply_transforms_to_points_cmd = [
@@ -86,9 +91,14 @@ class ANTsCoordinatesWarper:
         )
 
         # Load coordinates
-        return np.loadtxt(
+        transformed_seeds = np.loadtxt(
             # Skip header when reading
             transformed_coords_path,
             delimiter=",",
             skiprows=1,
         )
+        # Convert RAS to LPS
+        transformed_seeds[:, 0] *= -1
+        transformed_seeds[:, 1] *= -1
+
+        return transformed_seeds

junifer/data/coordinates/_coordinates.py

@@ -362,7 +362,7 @@ class CoordinatesRegistry(BasePipelineDataRegistry, metaclass=Singleton):
                 seeds = ANTsCoordinatesWarper().warp(
                     seeds=seeds,
                     target_data=target_data,
-                    warp_data=warper_spec,
+                    warp_data=inverse_warper_spec,
                 )
 
         return seeds, labels

{junifer-0.0.6.dev252.dist-info → junifer-0.0.6.dev258.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: junifer
-Version: 0.0.6.dev252
+Version: 0.0.6.dev258
 Summary: JUelich NeuroImaging FEature extractoR
 Author-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Synchon Mandal <s.mandal@fz-juelich.de>
 Maintainer-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Synchon Mandal <s.mandal@fz-juelich.de>

{junifer-0.0.6.dev252.dist-info → junifer-0.0.6.dev258.dist-info}/RECORD

@@ -1,6 +1,6 @@
 junifer/__init__.py,sha256=2McgH1yNue6Z1V26-uN_mfMjbTcx4CLhym-DMBl5xA4,266
 junifer/__init__.pyi,sha256=SsTvgq2Dod6UqJN96GH1lCphH6hJQQurEJHGNhHjGUI,508
-junifer/_version.py,sha256=S9qDvnNyOO9a_to9Vo0ycmZ4Gm9Jem18xQI-OFVf2kY,428
+junifer/_version.py,sha256=-HB5jqFqzc7zEZaNPXVSCoHvW4V223fvaUsizOfAdfQ,428
 junifer/conftest.py,sha256=PWYkkRDU8ly2lYwv7VBKMHje4et6HX7Yey3Md_I2KbA,613
 junifer/py.typed,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 junifer/stats.py,sha256=pQCy9u4q3Wp0kMFmS0BVIfU8UCKsRqrNbyprhtlNUOg,6225
@@ -79,8 +79,8 @@ junifer/data/template_spaces.py,sha256=Hcg4k1FL_kVhde6JJUXIQWd_fjqdtTto3nbzx8-t5
 junifer/data/utils.py,sha256=5r-0QGQCNZvDM1tVcl9xyrIdgAO85mww0plpM1RUaGA,3247
 junifer/data/coordinates/__init__.py,sha256=ffM8rwcHLgHAWixJbKrATrbUKzX940V1UF6RAxZdUMg,186
 junifer/data/coordinates/__init__.pyi,sha256=Z-Ti5XD3HigkZ8uYN6oYsLqw40-F1GvTVQ5QAy08Wng,88
-junifer/data/coordinates/_ants_coordinates_warper.py,sha256=szFaqqwDUN0yxdO921YBzKCsEer9b7NQQkKcxwelScs,2654
-junifer/data/coordinates/_coordinates.py,sha256=vBr96QJWxq7ahrT27kUVL8KimPPm1qAKsROZx75VnWM,12493
+junifer/data/coordinates/_ants_coordinates_warper.py,sha256=5RWDC-nI3VG9lkSJ-_y_hlDtjPctKSJokQOp3v8ozwY,2956
+junifer/data/coordinates/_coordinates.py,sha256=fBXVvuTxYLTNBSrQiTCiQsxpT0SdbQze3DYuGGgz_mY,12501
 junifer/data/coordinates/_fsl_coordinates_warper.py,sha256=GI0SrkNyAuRsoRSxI5WNvQmtPXQ3MlXvPx9lrd3NYB4,2406
 junifer/data/coordinates/VOIs/meta/AutobiographicalMemory_VOIs.txt,sha256=9af38naeL18Tlt_gy_ep6vyTAxOB336JYjbo5FvP8PQ,686
 junifer/data/coordinates/VOIs/meta/CogAC_VOIs.txt,sha256=Sr5_E712OLdeQRyUcDNM0wLBvZIyO6gc9Q7KkyJHX1A,398
@@ -339,10 +339,10 @@ junifer/utils/singleton.py,sha256=pp2jOGXmTdZSf4XDL-5S79YKY1Iag1inyWBjVC0Ic9U,11
 junifer/utils/tests/test_fs.py,sha256=WQS7cKlKEZ742CIuiOYYpueeAhY9PqlastfDVpVVtvE,923
 junifer/utils/tests/test_helpers.py,sha256=k5qqfxK8dFyuewTJyR1Qn6-nFaYNuVr0ysc18bfPjyU,929
 junifer/utils/tests/test_logging.py,sha256=duO4ou365hxwa_kwihFtKPLaL6LC5XHiyhOijrrngbA,8009
-junifer-0.0.6.dev252.dist-info/AUTHORS.rst,sha256=rmULKpchpSol4ExWFdm-qu4fkpSZPYqIESVJBZtGb6E,163
-junifer-0.0.6.dev252.dist-info/LICENSE.md,sha256=MqCnOBu8uXsEOzRZWh9EBVfVz-kE9NkXcLCrtGXo2yU,34354
-junifer-0.0.6.dev252.dist-info/METADATA,sha256=NKEnNrEcF6wImvpUatyTs4s1VWw05oQhAg-NiXuAJQY,8481
-junifer-0.0.6.dev252.dist-info/WHEEL,sha256=R06PA3UVYHThwHvxuRWMqaGcr-PuniXahwjmQRFMEkY,91
-junifer-0.0.6.dev252.dist-info/entry_points.txt,sha256=6O8ru0BP-SP7YMUZiizFNoaZ2HvJpadO2G7nKk4PwjI,48
-junifer-0.0.6.dev252.dist-info/top_level.txt,sha256=4bAq1R2QFQ4b3hohjys2JBvxrl0GKk5LNFzYvz9VGcA,8
-junifer-0.0.6.dev252.dist-info/RECORD,,
+junifer-0.0.6.dev258.dist-info/AUTHORS.rst,sha256=rmULKpchpSol4ExWFdm-qu4fkpSZPYqIESVJBZtGb6E,163
+junifer-0.0.6.dev258.dist-info/LICENSE.md,sha256=MqCnOBu8uXsEOzRZWh9EBVfVz-kE9NkXcLCrtGXo2yU,34354
+junifer-0.0.6.dev258.dist-info/METADATA,sha256=m8Kc3zI1th_ZSI3sdBkBM_5-n-N4UT5tjqGBYyEz3S8,8481
+junifer-0.0.6.dev258.dist-info/WHEEL,sha256=R06PA3UVYHThwHvxuRWMqaGcr-PuniXahwjmQRFMEkY,91
+junifer-0.0.6.dev258.dist-info/entry_points.txt,sha256=6O8ru0BP-SP7YMUZiizFNoaZ2HvJpadO2G7nKk4PwjI,48
+junifer-0.0.6.dev258.dist-info/top_level.txt,sha256=4bAq1R2QFQ4b3hohjys2JBvxrl0GKk5LNFzYvz9VGcA,8
+junifer-0.0.6.dev258.dist-info/RECORD,,