junifer 0.0.6.dev213__py3-none-any.whl → 0.0.6.dev227__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- junifer/__init__.pyi +2 -0
- junifer/_version.py +2 -2
- junifer/api/decorators.py +5 -4
- junifer/api/functions.py +9 -8
- junifer/datagrabber/multiple.py +2 -1
- junifer/markers/base.py +4 -7
- junifer/markers/brainprint.py +4 -4
- junifer/markers/complexity/complexity_base.py +3 -3
- junifer/markers/ets_rss.py +4 -3
- junifer/markers/falff/_afni_falff.py +3 -5
- junifer/markers/falff/_junifer_falff.py +3 -3
- junifer/markers/falff/falff_base.py +4 -6
- junifer/markers/functional_connectivity/crossparcellation_functional_connectivity.py +4 -3
- junifer/markers/functional_connectivity/functional_connectivity_base.py +4 -3
- junifer/markers/parcel_aggregation.py +4 -3
- junifer/markers/reho/_afni_reho.py +3 -5
- junifer/markers/reho/_junifer_reho.py +3 -3
- junifer/markers/reho/reho_base.py +4 -6
- junifer/markers/sphere_aggregation.py +4 -3
- junifer/markers/temporal_snr/temporal_snr_base.py +4 -3
- junifer/onthefly/_brainprint.py +4 -7
- junifer/onthefly/read_transform.py +3 -6
- junifer/pipeline/marker_collection.py +6 -12
- junifer/pipeline/pipeline_component_registry.py +3 -8
- junifer/pipeline/tests/test_pipeline_step_mixin.py +18 -19
- junifer/pipeline/tests/test_workdir_manager.py +43 -0
- junifer/pipeline/workdir_manager.py +17 -2
- junifer/preprocess/confounds/fmriprep_confound_remover.py +2 -2
- junifer/preprocess/smoothing/_afni_smoothing.py +4 -6
- junifer/preprocess/smoothing/_fsl_smoothing.py +4 -7
- junifer/preprocess/smoothing/_nilearn_smoothing.py +3 -3
- junifer/preprocess/smoothing/smoothing.py +3 -2
- junifer/preprocess/warping/_ants_warper.py +3 -5
- junifer/preprocess/warping/_fsl_warper.py +3 -5
- junifer/preprocess/warping/space_warper.py +3 -2
- junifer/preprocess/warping/tests/test_space_warper.py +4 -7
- junifer/typing/__init__.py +9 -0
- junifer/typing/__init__.pyi +23 -0
- junifer/typing/_typing.py +61 -0
- {junifer-0.0.6.dev213.dist-info → junifer-0.0.6.dev227.dist-info}/METADATA +2 -1
- {junifer-0.0.6.dev213.dist-info → junifer-0.0.6.dev227.dist-info}/RECORD +46 -43
- {junifer-0.0.6.dev213.dist-info → junifer-0.0.6.dev227.dist-info}/WHEEL +1 -1
- {junifer-0.0.6.dev213.dist-info → junifer-0.0.6.dev227.dist-info}/AUTHORS.rst +0 -0
- {junifer-0.0.6.dev213.dist-info → junifer-0.0.6.dev227.dist-info}/LICENSE.md +0 -0
- {junifer-0.0.6.dev213.dist-info → junifer-0.0.6.dev227.dist-info}/entry_points.txt +0 -0
- {junifer-0.0.6.dev213.dist-info → junifer-0.0.6.dev227.dist-info}/top_level.txt +0 -0
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"""Provide type hints for internal and external use."""
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# Authors: Synchon Mandal <s.mandal@fz-juelich.de>
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# License: AGPL
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from typing import (
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TYPE_CHECKING,
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AbstractSet,
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MutableMapping,
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Sequence,
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Type,
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Union,
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)
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if TYPE_CHECKING:
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from ..datagrabber import BaseDataGrabber
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from ..datareader import DefaultDataReader
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from ..markers import BaseMarker
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from ..preprocess import BasePreprocessor
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from ..storage import BaseFeatureStorage
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__all__ = [
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"DataGrabberLike",
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"PreprocessorLike",
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"MarkerLike",
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"StorageLike",
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"PipelineComponent",
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"Dependencies",
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"ConditionalDependencies",
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"ExternalDependencies",
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"MarkerInOutMappings",
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]
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DataGrabberLike = Type["BaseDataGrabber"]
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PreprocessorLike = Type["BasePreprocessor"]
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MarkerLike = Type["BaseMarker"]
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StorageLike = Type["BaseFeatureStorage"]
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PipelineComponent = Union[
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"DataGrabberLike",
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"DefaultDataReader",
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"PreprocessorLike",
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"MarkerLike",
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"StorageLike",
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]
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Dependencies = AbstractSet[str]
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ConditionalDependencies = Sequence[
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MutableMapping[
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str,
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Union[
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str,
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PipelineComponent,
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Sequence[str],
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Sequence[PipelineComponent],
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],
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]
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]
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ExternalDependencies = Sequence[MutableMapping[str, Union[str, Sequence[str]]]]
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MarkerInOutMappings = MutableMapping[str, MutableMapping[str, str]]
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Metadata-Version: 2.1
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Name: junifer
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Version: 0.0.6.
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Version: 0.0.6.dev227
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Summary: JUelich NeuroImaging FEature extractoR
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Author-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Synchon Mandal <s.mandal@fz-juelich.de>
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Maintainer-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Synchon Mandal <s.mandal@fz-juelich.de>
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* `preprocess`: Preprocessing module.
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* `storage`: Storage module.
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* `testing`: Testing components module.
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* `typing`: Type hints module.
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* `utils`: Utilities module (e.g. logging).
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## Installation
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junifer/__init__.py,sha256=2McgH1yNue6Z1V26-uN_mfMjbTcx4CLhym-DMBl5xA4,266
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junifer/__init__.pyi,sha256=
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junifer/_version.py,sha256=
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junifer/__init__.pyi,sha256=SsTvgq2Dod6UqJN96GH1lCphH6hJQQurEJHGNhHjGUI,508
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junifer/_version.py,sha256=50D8N6gqOpZgV-86BOsdlXuttfI5h2MQcfYofu2g3wg,428
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junifer/conftest.py,sha256=PWYkkRDU8ly2lYwv7VBKMHje4et6HX7Yey3Md_I2KbA,613
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junifer/py.typed,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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junifer/stats.py,sha256=BjQb2lfTGDP9l4UuQYmJFcJJNRfbJDGlNvC06SJaDDE,6237
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junifer/api/__init__.py,sha256=aAXW_KAEGQ8aAP5Eni2G1R4MWBF7UgjKOgM6akLuJco,252
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junifer/api/__init__.pyi,sha256=UJu55ApMFd43N0xlQyNKrYpCdzqhAxA3Jjaj0ETwCXU,169
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junifer/api/decorators.py,sha256=
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junifer/api/functions.py,sha256=
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junifer/api/decorators.py,sha256=YRhZvjBuPV5QWjdnYwWF-OIaMwVs0OOfsLjj07F_ncQ,2878
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junifer/api/functions.py,sha256=WRNWdap3HCrLyr_9GInxoY4U_yhQrIc1M3UFkyuR3dQ,12845
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junifer/api/py.typed,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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junifer/api/queue_context/__init__.py,sha256=glr8x4aMm4EvVrHywDIlugdNlwD1RzqV2FTDNPqYQZ4,204
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junifer/api/queue_context/__init__.pyi,sha256=LoDQFGZ9wCDmgx5a1_nhKo4zOSvqViXZ8V882DksF7U,246
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junifer/datagrabber/base.py,sha256=fFPIt6p3SdZ6vzReGQxK2qJnQzh8HTwBe87A2WYArVI,6538
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junifer/datagrabber/datalad_base.py,sha256=NnWHXBfyobxoOms4ZojCMJC6ZalFOKQMH2AWVkLC2GU,11108
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junifer/datagrabber/dmcc13_benchmark.py,sha256=se9F6QVw9WX22MNld33OQv_BtdW-yPvXXu6kYykxLNw,12225
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junifer/datagrabber/multiple.py,sha256=
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junifer/datagrabber/multiple.py,sha256=OgGKMQCyET4R_19s0DYNXrzvXIWYoNCktZivE1SeTAI,6524
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junifer/datagrabber/pattern.py,sha256=iSubnHOJjYck1Zhk_JAYRZjRPKYmfoO81tG1zowd3B4,17039
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junifer/datagrabber/pattern_datalad.py,sha256=QPWXIToYHDU4mvm9lz_hy8BjdqqoCXiGiJKCcATrT-w,4568
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junifer/datagrabber/pattern_validation_mixin.py,sha256=SSnTdUA7elaTh9HF7syvW-lTBS1VgdSkyOJiw5mT2Vw,13469
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junifer/external/nilearn/tests/test_junifer_nifti_spheres_masker.py,sha256=zpvBYIvaNjUj9fIUg5K78LRzJqbyMYlUo2UQYS9_lo4,12275
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junifer/markers/__init__.py,sha256=wHAxljlZppxgXimSJw21mp9oUYYyaID4LYfeBolva30,310
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junifer/markers/base.py,sha256=ioS3OTotNcL-ZJHDAAECvpdtEWCASfkRRX-MHesMDQo,8293
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junifer/markers/brainprint.py,sha256=m3eQtdcHNMWOC2ugTplWmXq19PEq5QMrr8_JPmoDrNE,15164
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junifer/markers/ets_rss.py,sha256=WMKPEhfaeW09XhUnxOIiNL3OS7W5O1MZixvetzBTIc8,4304
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junifer/markers/parcel_aggregation.py,sha256=wv4JG6zDEt0HPHak6SAlNYmeAgkZh4yg61Mr3BkR_wc,8442
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junifer/markers/sphere_aggregation.py,sha256=s2GdmO31ELtLS-mEUVbYxsH7p0xlQwZ_vkxNTxmvk8g,8020
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junifer/markers/utils.py,sha256=b6Bt_isqsOD2OF7oHvEpHyilauxYZzyz8YcbGWq6J4A,3833
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junifer/markers/complexity/__init__.py,sha256=6ZoTQy7hU_vnH65VlJbi61VfPAdg-RpuV84aXhzr8j0,552
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junifer/markers/complexity/__init__.pyi,sha256=I2IbSuKnUEf03Yunv884ASBxKjQ9_fenACccjaxTkyc,495
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junifer/markers/complexity/complexity_base.py,sha256=
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junifer/markers/complexity/complexity_base.py,sha256=nrTpOAyQOxZi1UoZx3us-tP_DDlKdRSum7RbbG9Ywq8,4210
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junifer/markers/complexity/hurst_exponent.py,sha256=ypdKo7MFQeHsJnqQX2PtD0W3Vx1p3_f0xSD6rgr1wns,4654
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junifer/markers/complexity/multiscale_entropy_auc.py,sha256=fHVFt9KL3d2on0_35lPG-eeLK_2dKqbJC9ybIG49eYo,4885
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junifer/markers/complexity/perm_entropy.py,sha256=kP5dREqGfMe8BS3MGGiOSbAsIJVkCooVQ8cH6jOadLI,4403
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junifer/markers/complexity/tests/test_weighted_perm_entropy.py,sha256=yDWKEaUbxrnrG6J2NlktLfwSBre5OuXd63kEof7t8PM,2373
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junifer/markers/falff/_afni_falff.py,sha256=SBHNZg0CNUsTgHrHvKfHGcZIyKroG6d1YQe-z6BL_Hs,4529
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junifer/markers/falff/_junifer_falff.py,sha256=jzVuZ5zP0pVfUFEuo7dHGK9hX-Pd5xgrGHMHstvLzJE,4461
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junifer/markers/falff/falff_base.py,sha256=JL6QFoQ8rHyK1YalfZX91y5JQTlZPoxByRdurHOwi68,4930
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