junifer 0.0.6.dev205__py3-none-any.whl → 0.0.6.dev219__py3-none-any.whl

junifer/_version.py

@@ -12,5 +12,5 @@ __version__: str
 __version_tuple__: VERSION_TUPLE
 version_tuple: VERSION_TUPLE
 
-__version__ = version = '0.0.6.dev205'
-__version_tuple__ = version_tuple = (0, 0, 6, 'dev205')
+__version__ = version = '0.0.6.dev219'
+__version_tuple__ = version_tuple = (0, 0, 6, 'dev219')

junifer/conftest.py

@@ -0,0 +1,25 @@
+"""Provide conftest for pytest."""
+
+# Authors: Federico Raimondo <f.raimondo@fz-juelich.de>
+# License: AGPL
+
+import pytest
+
+from junifer.utils.singleton import Singleton
+
+
+@pytest.fixture(autouse=True)
+def reset_singletons() -> None:
+    """Reset all singletons."""
+    to_clean = ["WorkDirManager"]
+    to_remove = [
+        v for k, v in Singleton.instances.items() if k.__name__ in to_clean
+    ]
+    Singleton.instances = {
+        k: v
+        for k, v in Singleton.instances.items()
+        if k.__name__ not in to_clean
+    }
+    # Force deleting the singletons
+    for elem in to_remove:
+        del elem

junifer/data/coordinates/_coordinates.py

@@ -11,8 +11,8 @@ import numpy as np
 import pandas as pd
 from numpy.typing import ArrayLike
 
-from ...pipeline.singleton import singleton
 from ...utils import logger, raise_error
+from ...utils.singleton import Singleton
 from ..pipeline_data_registry_base import BasePipelineDataRegistry
 from ._ants_coordinates_warper import ANTsCoordinatesWarper
 from ._fsl_coordinates_warper import FSLCoordinatesWarper
@@ -21,8 +21,7 @@ from ._fsl_coordinates_warper import FSLCoordinatesWarper
 __all__ = ["CoordinatesRegistry"]
 
 
-@singleton
-class CoordinatesRegistry(BasePipelineDataRegistry):
+class CoordinatesRegistry(BasePipelineDataRegistry, metaclass=Singleton):
     """Class for coordinates data registry.
 
     This class is a singleton and is used for managing available coordinates

junifer/data/masks/_masks.py

@@ -25,8 +25,8 @@ from nilearn.masking import (
     intersect_masks,
 )
 
-from ...pipeline.singleton import singleton
 from ...utils import logger, raise_error
+from ...utils.singleton import Singleton
 from ..pipeline_data_registry_base import BasePipelineDataRegistry
 from ..template_spaces import get_template
 from ..utils import closest_resolution
@@ -126,8 +126,7 @@ def compute_brain_mask(
     return new_img_like(target_img, mask)  # type: ignore
 
 
-@singleton
-class MaskRegistry(BasePipelineDataRegistry):
+class MaskRegistry(BasePipelineDataRegistry, metaclass=Singleton):
     """Class for mask data registry.
 
     This class is a singleton and is used for managing available mask

junifer/data/parcellations/_parcellations.py

@@ -20,8 +20,8 @@ import numpy as np
 import pandas as pd
 from nilearn import datasets, image
 
-from ...pipeline.singleton import singleton
 from ...utils import logger, raise_error, warn_with_log
+from ...utils.singleton import Singleton
 from ..pipeline_data_registry_base import BasePipelineDataRegistry
 from ..utils import closest_resolution
 from ._ants_parcellation_warper import ANTsParcellationWarper
@@ -38,8 +38,7 @@ __all__ = [
 ]
 
 
-@singleton
-class ParcellationRegistry(BasePipelineDataRegistry):
+class ParcellationRegistry(BasePipelineDataRegistry, metaclass=Singleton):
     """Class for parcellation data registry.
 
     This class is a singleton and is used for managing available parcellation

junifer/data/pipeline_data_registry_base.py

@@ -7,12 +7,13 @@ from abc import ABC, abstractmethod
 from typing import Any, List, Mapping
 
 from ..utils import raise_error
+from ..utils.singleton import ABCSingleton
 
 
 __all__ = ["BasePipelineDataRegistry"]
 
 
-class BasePipelineDataRegistry(ABC):
+class BasePipelineDataRegistry(ABC, metaclass=ABCSingleton):
     """Abstract base class for pipeline data registry.
 
     For every interface that is required, one needs to provide a concrete

junifer/datagrabber/hcp1200/tests/test_hcp1200.py

@@ -3,6 +3,9 @@
 # Authors: Synchon Mandal <s.mandal@fz-juelich.de>
 # License: AGPL
 
+import shutil
+import tempfile
+from pathlib import Path
 from typing import Iterable, Optional
 
 import pytest
@@ -17,7 +20,8 @@ URI = "https://gin.g-node.org/juaml/datalad-example-hcp1200"
 @pytest.fixture(scope="module")
 def hcpdg() -> Iterable[DataladHCP1200]:
     """Return a HCP1200 DataGrabber."""
-    dg = DataladHCP1200()
+    tmpdir = Path(tempfile.gettempdir())
+    dg = DataladHCP1200(datadir=tmpdir / "datadir")
     # Set URI to Gin
     dg.uri = URI
     # Set correct root directory
@@ -26,6 +30,7 @@ def hcpdg() -> Iterable[DataladHCP1200]:
         for t_elem in dg.get_elements():
             dg[t_elem]
         yield dg
+    shutil.rmtree(tmpdir / "datadir", ignore_errors=True)
 
 
 @pytest.mark.parametrize(

junifer/markers/falff/_afni_falff.py

@@ -18,8 +18,8 @@ from typing import (
 import nibabel as nib
 
 from ...pipeline import WorkDirManager
-from ...pipeline.singleton import singleton
 from ...utils import logger, run_ext_cmd
+from ...utils.singleton import Singleton
 
 
 if TYPE_CHECKING:
@@ -29,8 +29,7 @@ if TYPE_CHECKING:
 __all__ = ["AFNIALFF"]
 
 
-@singleton
-class AFNIALFF:
+class AFNIALFF(metaclass=Singleton):
     """Class for computing ALFF using AFNI.
 
     This class uses AFNI's 3dRSFC to compute ALFF. It's designed as a singleton

junifer/markers/falff/_junifer_falff.py

@@ -19,8 +19,8 @@ import scipy as sp
 from nilearn import image as nimg
 
 from ...pipeline import WorkDirManager
-from ...pipeline.singleton import singleton
 from ...utils import logger
+from ...utils.singleton import Singleton
 
 
 if TYPE_CHECKING:
@@ -30,8 +30,7 @@ if TYPE_CHECKING:
 __all__ = ["JuniferALFF"]
 
 
-@singleton
-class JuniferALFF:
+class JuniferALFF(metaclass=Singleton):
     """Class for computing ALFF using junifer.
 
     It's designed as a singleton with caching for efficient computation.

junifer/markers/reho/_afni_reho.py

@@ -18,8 +18,8 @@ from typing import (
 import nibabel as nib
 
 from ...pipeline import WorkDirManager
-from ...pipeline.singleton import singleton
 from ...utils import logger, run_ext_cmd
+from ...utils.singleton import Singleton
 
 
 if TYPE_CHECKING:
@@ -29,8 +29,7 @@ if TYPE_CHECKING:
 __all__ = ["AFNIReHo"]
 
 
-@singleton
-class AFNIReHo:
+class AFNIReHo(metaclass=Singleton):
     """Class for computing ReHo using AFNI.
 
     This class uses AFNI's 3dReHo to compute ReHo. It's designed as a singleton

junifer/markers/reho/_junifer_reho.py

@@ -20,8 +20,8 @@ from nilearn import image as nimg
 from nilearn import masking as nmask
 
 from ...pipeline import WorkDirManager
-from ...pipeline.singleton import singleton
 from ...utils import logger, raise_error
+from ...utils.singleton import Singleton
 
 
 if TYPE_CHECKING:
@@ -31,8 +31,7 @@ if TYPE_CHECKING:
 __all__ = ["JuniferReHo"]
 
 
-@singleton
-class JuniferReHo:
+class JuniferReHo(metaclass=Singleton):
     """Class for computing ReHo using junifer.
 
     It's designed as a singleton with caching for efficient computation.

junifer/pipeline/pipeline_component_registry.py

@@ -9,7 +9,7 @@ import importlib
 from typing import TYPE_CHECKING, Dict, List, Mapping, Optional, Union
 
 from ..utils import logger, raise_error
-from .singleton import singleton
+from ..utils.singleton import Singleton
 
 
 if TYPE_CHECKING:
@@ -21,8 +21,7 @@ if TYPE_CHECKING:
 __all__ = ["PipelineComponentRegistry"]
 
 
-@singleton
-class PipelineComponentRegistry:
+class PipelineComponentRegistry(metaclass=Singleton):
     """Class for pipeline component registry.
 
     This class is a singleton and is used for managing pipeline components.

junifer/pipeline/tests/test_workdir_manager.py

@@ -102,3 +102,45 @@ def test_workdir_manager_get_and_delete_tempdir(tmp_path: Path) -> None:
     workdir_mgr._cleanup()
     # Should remove temporary directory
     assert workdir_mgr.root_tempdir is None
+
+def test_workdir_manager_no_cleanup(tmp_path: Path) -> None:
+    """Test WorkDirManager correctly bypasses cleanup.
+
+    Parameters
+    ----------
+    tmp_path : pathlib.Path
+        The path to the test directory.
+
+    """
+    workdir_mgr = WorkDirManager(cleanup=False)
+    workdir_mgr.workdir = tmp_path
+    # Check no root temporary directory
+    assert workdir_mgr.root_tempdir is None
+
+    tempdir = workdir_mgr.get_tempdir()
+    assert tempdir.exists()
+    # Should create a temporary directory
+    assert workdir_mgr.root_tempdir is not None
+
+    workdir_mgr.delete_tempdir(tempdir)
+    workdir_mgr._cleanup()
+
+    # Should remove temporary directory
+    assert workdir_mgr.root_tempdir is None
+    # But the temporary directory should still exist
+    assert tempdir.exists()
+
+    # Now the same but for the element directory
+
+    # Check no element directory
+    assert workdir_mgr.elementdir is None
+
+    tempdir = workdir_mgr.get_element_tempdir()
+    # Should create a temporary directory
+    assert workdir_mgr.elementdir is not None
+
+    workdir_mgr.cleanup_elementdir()
+    # Should remove temporary directory
+    assert workdir_mgr.elementdir is None
+    # But the temporary directory should still exist
+    assert tempdir.exists()

junifer/pipeline/workdir_manager.py

@@ -10,14 +10,13 @@ from pathlib import Path
 from typing import Optional, Union
 
 from ..utils import logger
-from .singleton import singleton
+from ..utils.singleton import Singleton
 
 
 __all__ = ["WorkDirManager"]
 
 
-@singleton
-class WorkDirManager:
+class WorkDirManager(metaclass=Singleton):
     """Class for working directory manager.
 
     This class is a singleton and is used for managing temporary and working
@@ -40,15 +39,20 @@ class WorkDirManager:
         The path to the element directory.
     root_tempdir : pathlib.Path or None
         The path to the root temporary directory.
+    cleanup : bool, optional
+        If False, the directories are not cleaned up after the object is
+        destroyed. This is useful for debugging purposes (default True).
 
     """
 
-    def __init__(self, workdir: Optional[Union[str, Path]] = None) -> None:
+    def __init__(
+        self, workdir: Optional[Union[str, Path]] = None, cleanup=True
+    ) -> None:
         """Initialize the class."""
         self._workdir = Path(workdir) if isinstance(workdir, str) else workdir
         self._elementdir = None
         self._root_tempdir = None
-
+        self._cleanup_dirs = cleanup
         self._set_default_workdir()
 
     def _set_default_workdir(self) -> None:
@@ -73,6 +77,9 @@ class WorkDirManager:
 
     def _cleanup(self) -> None:
         """Clean up the element and temporary directories."""
+        if self._cleanup_dirs is False:
+            self._root_tempdir = None
+            return
         # Remove element directory
         self.cleanup_elementdir()
         # Remove root temporary directory
@@ -172,6 +179,8 @@ class WorkDirManager:
             The temporary directory path to be deleted.
 
         """
+        if self._cleanup_dirs is False:
+            return
         logger.debug(f"Deleting element temporary directory at {tempdir}")
         shutil.rmtree(tempdir, ignore_errors=True)
 
@@ -183,6 +192,9 @@ class WorkDirManager:
         can lead to required intermediate files not being found.
 
         """
+        if self._cleanup_dirs is False:
+            self._elementdir = None
+            return
         if self._elementdir is not None:
             logger.debug(
                 "Deleting element directory at "
@@ -245,5 +257,7 @@ class WorkDirManager:
             The temporary directory path to be deleted.
 
         """
+        if self._cleanup_dirs is False:
+            return
         logger.debug(f"Deleting temporary directory at {tempdir}")
         shutil.rmtree(tempdir, ignore_errors=True)

junifer/{pipeline → utils}/singleton.py

@@ -1,15 +1,17 @@
 """Provide a singleton class to be used by pipeline components."""
 
 # Authors: Synchon Mandal <s.mandal@fz-juelich.de>
+#          Federico Raimondo <f.raimondo@fz-juelich.de>
 # License: AGPL
 
-from typing import Any, Dict, Type
+from abc import ABCMeta
+from typing import Any, ClassVar, Dict, Type
 
 
-__all__ = ["singleton"]
+__all__ = ["Singleton", "ABCSingleton"]
 
 
-def singleton(cls: Type) -> Type:
+class Singleton(type):
     """Make a class singleton.
 
     Parameters
@@ -17,15 +19,11 @@ def singleton(cls: Type) -> Type:
     cls : class
         The class to designate as singleton.
 
-    Returns
-    -------
-    class
-        The only instance of the class.
-
     """
-    instances: Dict = {}
 
-    def get_instance(*args: Any, **kwargs: Any) -> Type:
+    instances: ClassVar[Dict] = {}
+
+    def __call__(cls, *args: Any, **kwargs: Any) -> Type:
         """Get the only instance for a class.
 
         Parameters
@@ -41,8 +39,15 @@ def singleton(cls: Type) -> Type:
             The only instance of the class.
 
         """
-        if cls not in instances:
-            instances[cls] = cls(*args, **kwargs)
-        return instances[cls]
+        if cls not in cls.instances:
+            cls.instances[cls] = super(Singleton, cls).__call__(  # noqa: UP008
+                *args, **kwargs
+            )
+
+        return cls.instances[cls]
+
+
+class ABCSingleton(ABCMeta, Singleton):
+    """Make an abstract class a singleton."""
 
-    return get_instance
+    pass

{junifer-0.0.6.dev205.dist-info → junifer-0.0.6.dev219.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: junifer
-Version: 0.0.6.dev205
+Version: 0.0.6.dev219
 Summary: JUelich NeuroImaging FEature extractoR
 Author-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Synchon Mandal <s.mandal@fz-juelich.de>
 Maintainer-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Synchon Mandal <s.mandal@fz-juelich.de>

{junifer-0.0.6.dev205.dist-info → junifer-0.0.6.dev219.dist-info}/RECORD

@@ -1,6 +1,7 @@
 junifer/__init__.py,sha256=2McgH1yNue6Z1V26-uN_mfMjbTcx4CLhym-DMBl5xA4,266
 junifer/__init__.pyi,sha256=uPLuY27S7AY4kFzJX0ncCpzHnWJdztveMJpY3Di-wwQ,482
-junifer/_version.py,sha256=0MivfJdRjt5GJZQYgXSlKz-yBFynSLqLuXF6vUbCBnQ,428
+junifer/_version.py,sha256=CjqUG_Y4LDEZ8B4jqZpARBHOYed_438kYzl-7CnGiQU,428
+junifer/conftest.py,sha256=PWYkkRDU8ly2lYwv7VBKMHje4et6HX7Yey3Md_I2KbA,613
 junifer/py.typed,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 junifer/stats.py,sha256=BjQb2lfTGDP9l4UuQYmJFcJJNRfbJDGlNvC06SJaDDE,6237
 junifer/api/__init__.py,sha256=aAXW_KAEGQ8aAP5Eni2G1R4MWBF7UgjKOgM6akLuJco,252
@@ -72,14 +73,14 @@ junifer/configs/juseless/datagrabbers/tests/test_ukb_vbm.py,sha256=b9hjc1mgO--PS
 junifer/data/__init__.py,sha256=xJDI2QKtdjcNzpd1oVFM3guh1SFHM6jKstl7pFmzOuk,267
 junifer/data/__init__.pyi,sha256=qYszjUYcbFi_2zO23MnbA2HhTW-Ad2oh1pqPQYd6yt0,542
 junifer/data/_dispatch.py,sha256=_hmlIXuuuLJBbY5VH6lohJzhbMB7KEhFkVFwRDEdR_E,6189
-junifer/data/pipeline_data_registry_base.py,sha256=_3NheI2Wu5RuKI87WwR1bRzcNyZv_0UcL9q07jmPdh8,1922
+junifer/data/pipeline_data_registry_base.py,sha256=8UyrkXHVr7JdeVfD2xgIRQlrlH3lR2RLHUfnqbw0EyI,1989
 junifer/data/py.typed,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 junifer/data/template_spaces.py,sha256=9uZuFztBGNZk3mhUI2h0oQMajjx6Wv31Fx11pGlDI20,6510
 junifer/data/utils.py,sha256=R-AMuerRiJLU4aMK9_WWXFJn2yOuXtZ-YKrdHvFjZf4,1454
 junifer/data/coordinates/__init__.py,sha256=ffM8rwcHLgHAWixJbKrATrbUKzX940V1UF6RAxZdUMg,186
 junifer/data/coordinates/__init__.pyi,sha256=Z-Ti5XD3HigkZ8uYN6oYsLqw40-F1GvTVQ5QAy08Wng,88
 junifer/data/coordinates/_ants_coordinates_warper.py,sha256=Q08zC0MBQPwj94V8G6ZGdRoYA7V3ACNCDlcFlLXc0j8,2809
-junifer/data/coordinates/_coordinates.py,sha256=SVBhFdESAafQ1Vi4LfPaQxwx4s_PxBCjpq3OyQ1akbc,11953
+junifer/data/coordinates/_coordinates.py,sha256=0zem18y7vT9d_lBAUwF6EqxoUG29qD_nblI0RDx8oH4,11960
 junifer/data/coordinates/_fsl_coordinates_warper.py,sha256=9R0JiyYWXogMr1i6DLepXkjb1aeTZ3CUoxvAPuxNGls,2568
 junifer/data/coordinates/VOIs/meta/AutobiographicalMemory_VOIs.txt,sha256=9af38naeL18Tlt_gy_ep6vyTAxOB336JYjbo5FvP8PQ,686
 junifer/data/coordinates/VOIs/meta/CogAC_VOIs.txt,sha256=Sr5_E712OLdeQRyUcDNM0wLBvZIyO6gc9Q7KkyJHX1A,398
@@ -105,7 +106,7 @@ junifer/data/masks/__init__.py,sha256=eEEhHglyVEx1LrqwXjq3cOmjf4sTsgBstRx5-k7zIQ
 junifer/data/masks/__init__.pyi,sha256=lcgr8gmWDPibC4RxnWBXb8DDpIkO73Aax09u6VXiJJI,114
 junifer/data/masks/_ants_mask_warper.py,sha256=6bBqFO9HNoYG5eYw4IVNZEv2sL58Koz-YXCdpM7U6NQ,4937
 junifer/data/masks/_fsl_mask_warper.py,sha256=mxxJy4WYbbMHEZSpNaBL1RDT4H0RmhA4u8fp7oOW_k4,2567
-junifer/data/masks/_masks.py,sha256=ku9DX2FFo1Ndjzvh-SZzcSK_--eF46H1zcS-1SMsfvg,20953
+junifer/data/masks/_masks.py,sha256=2RMG9UL2GU11GgLaEoKPvrWVLtOVVf5etrTbEUefJm8,20960
 junifer/data/masks/tests/test_masks.py,sha256=RDYe8Z46M_hHdZn3hOvdqQXqiMlxJ6454gD3d1ee3zM,16132
 junifer/data/masks/ukb/UKB_15K_GM_template.nii.gz,sha256=jcX1pDOrDsoph8cPMNFVKH5gZYio5G4rJNpOFXm9wJI,946636
 junifer/data/masks/vickery-patil/CAT12_IXI555_MNI152_TMP_GS_GMprob0.2_clean.nii.gz,sha256=j6EY8EtRnUuRxeKgD65Q6B0GPEPIALKDJEIje1TfnAU,88270
@@ -115,7 +116,7 @@ junifer/data/parcellations/__init__.py,sha256=6-Ysil3NyZ69V6rWx4RO15_d-iDKizfbHu
 junifer/data/parcellations/__init__.pyi,sha256=lhBHTbMDizzqUqVHrx2eyfPFodrTBgMFeTgxfESSkQ8,140
 junifer/data/parcellations/_ants_parcellation_warper.py,sha256=1oOY_O0Ft0NOkGjk4Cx8lyChy7QYJRZbOtdQfDpo4jI,5399
 junifer/data/parcellations/_fsl_parcellation_warper.py,sha256=PwGXT1fEchjIIyQJVr53Ksssf6hHJTtJwgJj8t65LTA,2839
-junifer/data/parcellations/_parcellations.py,sha256=6aU7CaOixDB-jhe1AW-l6STpOtniNduL-bFUH6m3Lgs,65773
+junifer/data/parcellations/_parcellations.py,sha256=qgAZ1A17PMHEzKtZoEvdfL0VScMy1RIaOJ_C03x-Za0,65780
 junifer/data/parcellations/tests/test_parcellations.py,sha256=43h7lR7nEvo9vTK-AeUDMk0XdGTqyzQI8isYl8dWw6s,38339
 junifer/data/tests/test_data_utils.py,sha256=_DaiC8K79gs9HFHxr-udNeE2YTM6JA0-1i-K2cqK9qA,1087
 junifer/data/tests/test_template_spaces.py,sha256=PJulN7xHpAcSOTY-UzTG_WPywZEBSlAZGiNG4gzk1_8,3144
@@ -143,7 +144,7 @@ junifer/datagrabber/hcp1200/__init__.pyi,sha256=2ttZanYSzCsB195_xfXUyztPsVIF02AR
 junifer/datagrabber/hcp1200/datalad_hcp1200.py,sha256=hngQYLv4b8tC9Ep2X5A5R_L2sFM3ZJ8dmWTr_OlRLAA,2463
 junifer/datagrabber/hcp1200/hcp1200.py,sha256=AfVPd44CdyMcrUTOfps2PSpTQrXde68QeZaLGkXUTn4,6116
 junifer/datagrabber/hcp1200/py.typed,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-junifer/datagrabber/hcp1200/tests/test_hcp1200.py,sha256=KJ-Jq01l0a6TaboG898qjBdPTHG1E3PZtHCjJ7n-1X0,10765
+junifer/datagrabber/hcp1200/tests/test_hcp1200.py,sha256=17LK9fRAKmRQipo8UAgLOx9rA8G-91cTR_V_uAfKffk,10945
 junifer/datagrabber/tests/test_base.py,sha256=fZdVhNhvfht9lpTHrAUf5E6mAfNNUP7OTQ5KLaBQ1gI,3506
 junifer/datagrabber/tests/test_datalad_base.py,sha256=71erxpAECuy8iLtkmq_SRqfP4sKQf4uEb3O8CThBHT0,16285
 junifer/datagrabber/tests/test_dmcc13_benchmark.py,sha256=DcqkDXXBoabHFVbxekGR2NZyGeugGlxpOwXIwy38Ofg,9109
@@ -207,8 +208,8 @@ junifer/markers/complexity/tests/test_sample_entropy.py,sha256=rfbiguVq7CUwYIvYB
 junifer/markers/complexity/tests/test_weighted_perm_entropy.py,sha256=yDWKEaUbxrnrG6J2NlktLfwSBre5OuXd63kEof7t8PM,2373
 junifer/markers/falff/__init__.py,sha256=qxdx_3FsVrn7h3gtbocK0ZmvqZwPQZGKuVkPm31ejNM,217
 junifer/markers/falff/__init__.pyi,sha256=X-q2zBjUX0imQ37yN2Cg5gKfDvq8sh_9y2hRH4g5ufY,120
-junifer/markers/falff/_afni_falff.py,sha256=QNi_4MU4_sfnfXedrYHT-kn17KCDE6a7ELfSGmRZPmA,4521
-junifer/markers/falff/_junifer_falff.py,sha256=Datf23VxbiD6ZiC-3tANN9MMVHuZKzQx04nX1GXA25c,4417
+junifer/markers/falff/_afni_falff.py,sha256=6kHNWU9k-U6_wlCnysDK90svCqcRggVGOD4SjHnoI9I,4528
+junifer/markers/falff/_junifer_falff.py,sha256=UPu3myI6cNoDU1FB0t4Y71KOubPG1xBntdgZysOHiro,4424
 junifer/markers/falff/falff_base.py,sha256=1VjEZMd7BpXDc2subm0VzZNxFp6uxMb9QjBmMC6tDVg,4903
 junifer/markers/falff/falff_parcels.py,sha256=RuACr7qjxJ6fDo8KrbO2fUwpLtzLQXPr9WX4n--XUb0,6029
 junifer/markers/falff/falff_spheres.py,sha256=ZjcPLg29LBfsCLD8iZk0pW0nItH5uLmsn4nlLoUNB78,6668
@@ -232,8 +233,8 @@ junifer/markers/functional_connectivity/tests/test_functional_connectivity_parce
 junifer/markers/functional_connectivity/tests/test_functional_connectivity_spheres.py,sha256=OU2FWAH0Gb4gEOF0m1PAoo5xLKVPetNkwV-ssQTZ1Yw,4157
 junifer/markers/reho/__init__.py,sha256=WZf4A0XaRThjl8SlFOhvTLUfhTHp5koLxZgowsgTSAE,211
 junifer/markers/reho/__init__.pyi,sha256=_aFb-Ry_EP2OMU6xRL4GlfuDpSl_egHllL-fz7vXjcE,118
-junifer/markers/reho/_afni_reho.py,sha256=iaZFPJbyB9-QQAZ5-kKxwN0APB5MH85pOAChq-JFLNI,6469
-junifer/markers/reho/_junifer_reho.py,sha256=7-jD28YQQWb3dfT6SxyYfGugFSq8wi7_2hUA-ryiGAo,9307
+junifer/markers/reho/_afni_reho.py,sha256=eMHTaj2-zEHVgkz96Xx30Wn5sAGhXO-JmgItQAI9eNo,6476
+junifer/markers/reho/_junifer_reho.py,sha256=GFaKoEPUiLk9YRLXTfWplEhQmYipXWkPQj-7YvMXKO0,9314
 junifer/markers/reho/py.typed,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 junifer/markers/reho/reho_base.py,sha256=Tdnl5SJ66p461UJ-UilEGKrMdEPwGMemN_QIQgmc8o8,4065
 junifer/markers/reho/reho_parcels.py,sha256=tfGasSaAI-ioxVBTD2L_4gJQthoAq5Fp9e5iRS3mXhI,6404
@@ -262,18 +263,17 @@ junifer/onthefly/tests/test_read_transform.py,sha256=D2C3IpXQHdsJSF07v8rEwGntLGX
 junifer/pipeline/__init__.py,sha256=rxKQGRwc6_sts1KhVIcVVpuXeiFABf11mQQ2h5jgA3U,194
 junifer/pipeline/__init__.pyi,sha256=hhcvNcABhtLaUQiZdTjo5sMWC3rtDkwVshL0sxD5JAE,399
 junifer/pipeline/marker_collection.py,sha256=1xcJqeOZ_IerB7PAMN1itWBv8UR6lUW9xXRoIu4qLXU,5557
-junifer/pipeline/pipeline_component_registry.py,sha256=TVtAFf0QjeES7TFovc6_nUlkczNeQnDpq85aqNr5Gjg,9484
+junifer/pipeline/pipeline_component_registry.py,sha256=XE4lSSd6STp2VBhsaG21-tfe8kRt97N-1zwE26fF7Yc,9501
 junifer/pipeline/pipeline_step_mixin.py,sha256=wakimkG8GC0PWkFHMHIfgzM2yak41xLrzbVRH0oe8D4,7613
 junifer/pipeline/py.typed,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-junifer/pipeline/singleton.py,sha256=c5U8Xn10MQqaXjlLzxLbw3AmSYW6aTw_iSL0rDkbuMU,1011
 junifer/pipeline/update_meta_mixin.py,sha256=A_gYCPqdPlM0Xpum9TjJowb41O7ntxQg6y4YOgYeyy4,1564
 junifer/pipeline/utils.py,sha256=CAp0P7rZST7bsJ9lSlkvZgIJebHW2cIm8VXTuu1A6tE,10291
-junifer/pipeline/workdir_manager.py,sha256=8vBKdb7FtQaGV66Ngu_ucJJPrh2xoxf_1jMeNpJKT2Y,8050
+junifer/pipeline/workdir_manager.py,sha256=T7-sZY_Gj0SM7p9N1ATjUFK2T-6CYIMQeYwHpBz96Gs,8616
 junifer/pipeline/tests/test_marker_collection.py,sha256=edBHfmwMTXG_q0ZagApbAbkFNoegi3hVEQiNcBtZOKc,6959
 junifer/pipeline/tests/test_pipeline_component_registry.py,sha256=ww_akEhtvE1_fsWbX5Yd5w_G2Ki6w_5MInfihwwRYFk,5800
 junifer/pipeline/tests/test_pipeline_step_mixin.py,sha256=_ykZzyNzREXy-r_yv1gY_jquLZzVBl8qwYrVORCKY_k,7807
 junifer/pipeline/tests/test_update_meta_mixin.py,sha256=UeWwpUi-Q5WVd36Fgfn_utXplSVXMSjLcdO2mR2xLTk,1355
-junifer/pipeline/tests/test_workdir_manager.py,sha256=E1WY4C-GDsx2c49sePqr1WR_Y3nZ1kiRn4Veu506uTs,2801
+junifer/pipeline/tests/test_workdir_manager.py,sha256=N7_5cTnmv0eSQCT9UWOmFFVT-BIrNWq8GFmaqa-BtRI,4050
 junifer/preprocess/__init__.py,sha256=91D43p254il88g-7sSN64M7HsCvwytYoiTS_GLEr37Y,342
 junifer/preprocess/__init__.pyi,sha256=EApXtuEZohQZnIeP6k882Y2H5IRiGmhJbVGdN7VCWFc,254
 junifer/preprocess/base.py,sha256=v6azVA3RwDe3HriYlcaISOX1A6gYgFUKNzQeIDLx92Q,6681
@@ -332,13 +332,14 @@ junifer/utils/fs.py,sha256=M3CKBLh4gPS6s9giyopgb1hHMXzLb6k3cung2wHVBjs,492
 junifer/utils/helpers.py,sha256=_IqnaPaOcFy1yrEyNmmg7XqQWb1wHOtxfOBnlaRYbiI,2063
 junifer/utils/logging.py,sha256=ardaiJkDfZMYvak5UIL5Etxg5Ii7inmVQSBdFLdgtb8,9781
 junifer/utils/py.typed,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
+junifer/utils/singleton.py,sha256=3mEZT4GJ7lMkH8H7ZPgy0DBe6CNTqg9CRVJFDAy3h60,1201
 junifer/utils/tests/test_fs.py,sha256=WQS7cKlKEZ742CIuiOYYpueeAhY9PqlastfDVpVVtvE,923
 junifer/utils/tests/test_helpers.py,sha256=k5qqfxK8dFyuewTJyR1Qn6-nFaYNuVr0ysc18bfPjyU,929
 junifer/utils/tests/test_logging.py,sha256=duO4ou365hxwa_kwihFtKPLaL6LC5XHiyhOijrrngbA,8009
-junifer-0.0.6.dev205.dist-info/AUTHORS.rst,sha256=rmULKpchpSol4ExWFdm-qu4fkpSZPYqIESVJBZtGb6E,163
-junifer-0.0.6.dev205.dist-info/LICENSE.md,sha256=MqCnOBu8uXsEOzRZWh9EBVfVz-kE9NkXcLCrtGXo2yU,34354
-junifer-0.0.6.dev205.dist-info/METADATA,sha256=NZlUfhUouB1p0jvcp6C94uiNFLUs6CFE07DyG6DNW-8,8448
-junifer-0.0.6.dev205.dist-info/WHEEL,sha256=P9jw-gEje8ByB7_hXoICnHtVCrEwMQh-630tKvQWehc,91
-junifer-0.0.6.dev205.dist-info/entry_points.txt,sha256=6O8ru0BP-SP7YMUZiizFNoaZ2HvJpadO2G7nKk4PwjI,48
-junifer-0.0.6.dev205.dist-info/top_level.txt,sha256=4bAq1R2QFQ4b3hohjys2JBvxrl0GKk5LNFzYvz9VGcA,8
-junifer-0.0.6.dev205.dist-info/RECORD,,
+junifer-0.0.6.dev219.dist-info/AUTHORS.rst,sha256=rmULKpchpSol4ExWFdm-qu4fkpSZPYqIESVJBZtGb6E,163
+junifer-0.0.6.dev219.dist-info/LICENSE.md,sha256=MqCnOBu8uXsEOzRZWh9EBVfVz-kE9NkXcLCrtGXo2yU,34354
+junifer-0.0.6.dev219.dist-info/METADATA,sha256=NmVabUMfIEWcEJ8nOtLA7HTzwuZYBhoIZPA1Z44ycdw,8448
+junifer-0.0.6.dev219.dist-info/WHEEL,sha256=P9jw-gEje8ByB7_hXoICnHtVCrEwMQh-630tKvQWehc,91
+junifer-0.0.6.dev219.dist-info/entry_points.txt,sha256=6O8ru0BP-SP7YMUZiizFNoaZ2HvJpadO2G7nKk4PwjI,48
+junifer-0.0.6.dev219.dist-info/top_level.txt,sha256=4bAq1R2QFQ4b3hohjys2JBvxrl0GKk5LNFzYvz9VGcA,8
+junifer-0.0.6.dev219.dist-info/RECORD,,