junifer 0.0.5.dev68__py3-none-any.whl → 0.0.5.dev93__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- junifer/_version.py +2 -2
- junifer/api/functions.py +1 -1
- junifer/configs/juseless/datagrabbers/tests/test_ucla.py +1 -3
- junifer/configs/juseless/datagrabbers/ucla.py +9 -9
- junifer/data/masks.py +10 -22
- junifer/data/parcellations.py +1 -1
- junifer/data/tests/test_masks.py +8 -28
- junifer/datagrabber/aomic/id1000.py +34 -38
- junifer/datagrabber/aomic/piop1.py +33 -37
- junifer/datagrabber/aomic/piop2.py +35 -39
- junifer/datagrabber/aomic/tests/test_id1000.py +10 -11
- junifer/datagrabber/aomic/tests/test_piop1.py +10 -11
- junifer/datagrabber/aomic/tests/test_piop2.py +10 -11
- junifer/datagrabber/datalad_base.py +10 -1
- junifer/datagrabber/dmcc13_benchmark.py +36 -54
- junifer/datagrabber/pattern.py +116 -46
- junifer/datagrabber/pattern_datalad.py +22 -12
- junifer/datagrabber/tests/test_datagrabber_utils.py +15 -9
- junifer/datagrabber/tests/test_dmcc13_benchmark.py +46 -19
- junifer/datagrabber/utils.py +127 -54
- junifer/datareader/default.py +91 -42
- junifer/preprocess/base.py +2 -2
- junifer/preprocess/confounds/fmriprep_confound_remover.py +44 -60
- junifer/preprocess/confounds/tests/test_fmriprep_confound_remover.py +72 -113
- junifer/storage/base.py +37 -1
- junifer/storage/hdf5.py +68 -9
- junifer/storage/tests/test_hdf5.py +82 -10
- junifer/testing/datagrabbers.py +5 -5
- junifer/testing/tests/test_partlycloudytesting_datagrabber.py +7 -7
- {junifer-0.0.5.dev68.dist-info → junifer-0.0.5.dev93.dist-info}/METADATA +1 -1
- {junifer-0.0.5.dev68.dist-info → junifer-0.0.5.dev93.dist-info}/RECORD +36 -36
- {junifer-0.0.5.dev68.dist-info → junifer-0.0.5.dev93.dist-info}/AUTHORS.rst +0 -0
- {junifer-0.0.5.dev68.dist-info → junifer-0.0.5.dev93.dist-info}/LICENSE.md +0 -0
- {junifer-0.0.5.dev68.dist-info → junifer-0.0.5.dev93.dist-info}/WHEEL +0 -0
- {junifer-0.0.5.dev68.dist-info → junifer-0.0.5.dev93.dist-info}/entry_points.txt +0 -0
- {junifer-0.0.5.dev68.dist-info → junifer-0.0.5.dev93.dist-info}/top_level.txt +0 -0
junifer/testing/datagrabbers.py
CHANGED
@@ -181,7 +181,7 @@ class PartlyCloudyTestingDataGrabber(BaseDataGrabber):
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"""Initialize the class."""
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datadir = tempfile.mkdtemp()
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# Define types
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types = ["BOLD"
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types = ["BOLD"]
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self.reduce_confounds = reduce_confounds
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self.age_group = age_group
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super().__init__(types=types, datadir=datadir)
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@@ -242,10 +242,10 @@ class PartlyCloudyTestingDataGrabber(BaseDataGrabber):
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out["BOLD"] = {
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"path": Path(self._dataset["func"][i_sub]),
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"space": "MNI152NLin2009cAsym",
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"confounds": {
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"path": Path(self._dataset["confounds"][i_sub]),
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"format": "fmriprep",
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},
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}
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return out
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@@ -28,13 +28,13 @@ def test_PartlyCloudyTestingDataGrabber() -> None:
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assert out["BOLD"]["path"].exists()
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assert out["BOLD"]["path"].is_file()
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assert "
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assert out["
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assert out["
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assert "format" in out["
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assert "fmriprep" == out["
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assert "confounds" in out["BOLD"]
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assert out["BOLD"]["confounds"]["path"].exists()
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assert out["BOLD"]["confounds"]["path"].is_file()
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assert "format" in out["BOLD"]["confounds"]
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assert "fmriprep" == out["BOLD"]["confounds"]["format"]
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with PartlyCloudyTestingDataGrabber(reduce_confounds=False) as dg:
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out = dg["sub-01"]
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assert "format" in out["
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assert "fmriprep" == out["
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assert "format" in out["BOLD"]["confounds"]
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assert "fmriprep" == out["BOLD"]["confounds"]["format"]
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@@ -1,6 +1,6 @@
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Metadata-Version: 2.1
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Name: junifer
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Version: 0.0.5.
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Version: 0.0.5.dev93
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Summary: JUelich NeuroImaging FEature extractoR
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Author-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Synchon Mandal <s.mandal@fz-juelich.de>
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Maintainer-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Synchon Mandal <s.mandal@fz-juelich.de>
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@@ -1,10 +1,10 @@
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junifer/__init__.py,sha256=x1UR2jUcrUdm2HNl-3Qvyi4UUrU6ms5qm2qcmNY7zZk,391
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junifer/_version.py,sha256=
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junifer/_version.py,sha256=OuEXOAHKhbHnm8jc8By5AoScd2qmQjT4HRDoRe1JlYM,426
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junifer/stats.py,sha256=jN22_qFvWYBU9ZIMnCSzN4iOscWnWrcrUPIdLeDkV64,6163
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junifer/api/__init__.py,sha256=pSj8V8tmwOAQ3sshWJfRfB-n3z5bcJj3pHOBX4-8ONc,251
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junifer/api/cli.py,sha256=53pews3mXkJ7DUDSkV51PbitYnuVAdQRkWG-gjO08Uw,16142
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junifer/api/decorators.py,sha256=8bnwHPAe7VgzKxl--M_e0umdAlTVSzaJQHEJZ5kof5k,2580
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junifer/api/functions.py,sha256=
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junifer/api/functions.py,sha256=hkiJhqIRgclWHFmThGFntAXno9vFI38FQfBrEwm1-AY,13047
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junifer/api/parser.py,sha256=a3SSC2xO-PF1pqXZXFq8Sh9aVd-dmHolJbCkGyOUTAM,4416
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junifer/api/utils.py,sha256=dyjTdPMwX9qeCrn8SQT2Pjshfnu-y1FEyujV7lCzvm0,3333
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junifer/api/queue_context/__init__.py,sha256=_yXJ8woTxLNLoSR3yLxAW7MtC5sa-oCRxewsZ9D3j98,271
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@@ -49,17 +49,17 @@ junifer/configs/juseless/datagrabbers/__init__.py,sha256=kLcoJyUZMrrAmgWynuTvute
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junifer/configs/juseless/datagrabbers/aomic_id1000_vbm.py,sha256=4Vf1AC6WSDkCaYXKJXEkJHS2UsdON57wdhj_oqpK-vw,1428
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junifer/configs/juseless/datagrabbers/camcan_vbm.py,sha256=GXnDML55kKEGSb38olRUWL_AFdN9IvPViEGP9CaDTUQ,1497
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junifer/configs/juseless/datagrabbers/ixi_vbm.py,sha256=mCuv-27AsN9bReoq3Fo7CJaC2Jkmd5Y1sFEk5ExGqUo,2263
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junifer/configs/juseless/datagrabbers/ucla.py,sha256=
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junifer/configs/juseless/datagrabbers/ucla.py,sha256=2ZjK6n9eJ9terKm8tDqwAyOIbYgvssQMI0dIBKrUXCc,4846
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junifer/configs/juseless/datagrabbers/ukb_vbm.py,sha256=d2N3X1OVrcmkKNVkruNDKzU2iqBH9oGUnhfxkg0-7aw,1485
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junifer/configs/juseless/datagrabbers/tests/test_aomic_id1000_vbm.py,sha256=Y_npFmmj0MN0TYv8jaxVMgFHLMQLZ8vXl8lWQKvOYbc,1001
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junifer/configs/juseless/datagrabbers/tests/test_camcan_vbm.py,sha256=o0dzptS97pxrWaY7I1m0dpJtsnAwmIXNqdU9ABTWCqI,975
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junifer/configs/juseless/datagrabbers/tests/test_ixi_vbm.py,sha256=8jxpNZelXwpJGvA5LOfpso2X8yt1chvERAYmv76hS_g,1252
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junifer/configs/juseless/datagrabbers/tests/test_ucla.py,sha256=
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junifer/configs/juseless/datagrabbers/tests/test_ucla.py,sha256=NfEKlpaMNImiPLGyETDDCMoWZ7_oHGsiVAbQNYsfi3o,3252
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junifer/configs/juseless/datagrabbers/tests/test_ukb_vbm.py,sha256=b9hjc1mgO--PSRC3id2EzzfE2yWNsuZ2UI47a6sfGZU,1025
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junifer/data/__init__.py,sha256=Z3CdIXpXK3Avxm2Qj7MsuNNZSM8Pc5KBa9D51DYd1v0,602
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junifer/data/coordinates.py,sha256=AovvAdPhl9oQoH4T24jhzW0UuNL8wRYtkYrYHhvtRC8,12381
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junifer/data/masks.py,sha256=
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junifer/data/parcellations.py,sha256=
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junifer/data/masks.py,sha256=ii7wEnJjnVR22KgigvdxIE2jsvwW7PrfKnyMhMRmZUU,20810
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junifer/data/parcellations.py,sha256=S2Hs_FwvqWZ_rFEumTW5b2aX2iyZEw_9KGAO9Z0-dxM,65343
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junifer/data/template_spaces.py,sha256=2dD9GIBgsd764ol3ZvmHL11VrsaBC78CwrMaMh4TCGQ,5756
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junifer/data/utils.py,sha256=Jmbc7SLzy4nLP_zkWv_aJzb1MZ27tutJ98ifsECCamM,1295
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junifer/data/VOIs/meta/AutobiographicalMemory_VOIs.txt,sha256=9af38naeL18Tlt_gy_ep6vyTAxOB336JYjbo5FvP8PQ,686
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junifer/data/masks/vickery-patil/GMprob0.2_cortex_3mm_NA_rm.nii.gz,sha256=jfMe_4H9XEnArYms5bSQbqS2V1_HbLHTfI5amQa_Pes,8700
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junifer/data/tests/test_coordinates.py,sha256=BNkz9qFbnwAI0oVlIm_XrT-z4Vsia_rMtMVaoFXT6mU,4328
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junifer/data/tests/test_data_utils.py,sha256=_DaiC8K79gs9HFHxr-udNeE2YTM6JA0-1i-K2cqK9qA,1087
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junifer/data/tests/test_masks.py,sha256=
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junifer/data/tests/test_masks.py,sha256=wqmG7N8Fia2faFCAyqfX7WGs0gFAo5qXGKytv0KAgYA,15183
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junifer/data/tests/test_parcellations.py,sha256=ZEU1VHIK0AyxpclcJhG_0rQU0phaBU_dHP7Erfi3mN8,38222
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junifer/data/tests/test_template_spaces.py,sha256=PJulN7xHpAcSOTY-UzTG_WPywZEBSlAZGiNG4gzk1_8,3144
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junifer/datagrabber/__init__.py,sha256=fhHKsZyBeqCFJJMr53VF6EUkNrFuUZkNR8QZbaoHTNg,680
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junifer/datagrabber/base.py,sha256=KgMSKfkwd4yLW4PhoJDoWMgcDkGmDoIs6jkgKyOJd9A,6303
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junifer/datagrabber/datalad_base.py,sha256=
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junifer/datagrabber/dmcc13_benchmark.py,sha256=
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junifer/datagrabber/datalad_base.py,sha256=gP-DsyCd2F8W-aF2PXOg99Ntp2bj8QEtb535y06q39o,11009
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junifer/datagrabber/dmcc13_benchmark.py,sha256=se9F6QVw9WX22MNld33OQv_BtdW-yPvXXu6kYykxLNw,12225
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junifer/datagrabber/multiple.py,sha256=eXQIsvSNvD8GuEITjMaMoi1GwoeyWXXbQMRi-f2qgc4,4923
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junifer/datagrabber/pattern.py,sha256=
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junifer/datagrabber/pattern_datalad.py,sha256=
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junifer/datagrabber/utils.py,sha256=
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junifer/datagrabber/pattern.py,sha256=w1aTL5xZRH9vq3-RofdmW-d_1t2OrAKRL0McCQErHGE,15273
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junifer/datagrabber/pattern_datalad.py,sha256=R3LMeknT7tAXs2AN0XVPRf6tGkCMPgDfkNT2bfi7UNc,4526
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junifer/datagrabber/utils.py,sha256=s0Ife1qKEwXP47GfoxQ0qGqSP8L8ZNAms3HAvrSFoGI,9406
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junifer/datagrabber/aomic/__init__.py,sha256=R7yrRVBWsBW25CH0fw-KHpFwb_EC-MlPKDzssGfj5A0,281
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junifer/datagrabber/aomic/id1000.py,sha256=
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junifer/datagrabber/aomic/piop1.py,sha256=
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junifer/datagrabber/aomic/piop2.py,sha256=
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junifer/datagrabber/aomic/tests/test_id1000.py,sha256=
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junifer/datagrabber/aomic/tests/test_piop1.py,sha256=
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junifer/datagrabber/aomic/tests/test_piop2.py,sha256=
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junifer/datagrabber/aomic/id1000.py,sha256=DGQVMgSv8HoUH6qj_WnBQTMunaJNSlVihjfiCmICN2c,5963
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junifer/datagrabber/aomic/piop1.py,sha256=CR4L9VJk-lJnoYTJDOAzs39Z_fgFQAYt2pvAmKfGl-g,8382
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junifer/datagrabber/aomic/piop2.py,sha256=_vrUnFyfhwFjWR3O23-ksVXlj49rc-q-eK1lVytIquo,8001
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junifer/datagrabber/aomic/tests/test_id1000.py,sha256=jKkhvglMsvEK06sSJXj4vuFvH2YR9CfEbcnElX_HU-o,4683
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junifer/datagrabber/aomic/tests/test_piop1.py,sha256=GuNllX8VbEbpGsPcEWf3ssRzcSrIj4RlLCFfTsbF-tU,5449
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junifer/datagrabber/aomic/tests/test_piop2.py,sha256=ydQhrF4fQsp6j6M79p68r8SKmDcwHwQccLKDW4lbztI,5248
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junifer/datagrabber/hcp1200/__init__.py,sha256=zy4Qq1_m3vECEhioG-UDteco2b5cni_8xuElICaRtt4,189
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junifer/datagrabber/hcp1200/datalad_hcp1200.py,sha256=p5Bbg09qoM46km9eFSlspwLwOe6LMJFSIZ9NC9E2lmc,2432
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junifer/datagrabber/hcp1200/hcp1200.py,sha256=ohXHmrQHWjqRZSEXI6E5zla1d_t6LZTbv-cAj79w3PU,6091
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junifer/datagrabber/hcp1200/tests/test_hcp1200.py,sha256=KJ-Jq01l0a6TaboG898qjBdPTHG1E3PZtHCjJ7n-1X0,10765
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junifer/datagrabber/tests/test_base.py,sha256=fZdVhNhvfht9lpTHrAUf5E6mAfNNUP7OTQ5KLaBQ1gI,3506
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junifer/datagrabber/tests/test_datagrabber_utils.py,sha256=
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junifer/datagrabber/tests/test_datagrabber_utils.py,sha256=x1nqFiHI9xHBQFwXji0DPUG8crVoEzw6zmi3pKdhJQk,6513
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junifer/datagrabber/tests/test_datalad_base.py,sha256=SYxUB9_4YPMfrb7iJM-aJCWbGa3EJfYz31wAUCNa03s,16285
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junifer/datagrabber/tests/test_dmcc13_benchmark.py,sha256=
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junifer/datagrabber/tests/test_dmcc13_benchmark.py,sha256=DcqkDXXBoabHFVbxekGR2NZyGeugGlxpOwXIwy38Ofg,9109
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junifer/datagrabber/tests/test_multiple.py,sha256=Mx3xfDrQiWG2W5MW24P5L2XiSeALpJ2-jFlzWkKtu9w,5659
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junifer/datagrabber/tests/test_pattern_datalad.py,sha256=hxw_aXBwHjUo-aUrHescBA2dn1bSJxh-0oV8495iIEA,6483
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junifer/datareader/__init__.py,sha256=_vtrLX_vxlHFD90gPa3gWnhTuvfWM7Uzyj6y8ZPaWm8,259
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junifer/datareader/default.py,sha256=
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junifer/datareader/default.py,sha256=_ntvkcF0H089bHwj0VOLTKWp8RvP7qy2HyieWHuRp2c,6680
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junifer/datareader/tests/test_default_reader.py,sha256=9dPZSkba1YQjFsA0XwdUbx5sq8DVIEZoy_WfMAcvRus,5220
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junifer/external/__init__.py,sha256=CBB7eQul2hf-WWwT_PYFV1MS9KkXlZBO7oQWWVLgB_I,110
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junifer/external/h5io/h5io/__init__.py,sha256=LG7ru_Rt3EOE2H4PGYfBhC12Iax3yeTquZkd8TICiKk,469
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junifer/pipeline/tests/test_update_meta_mixin.py,sha256=UeWwpUi-Q5WVd36Fgfn_utXplSVXMSjLcdO2mR2xLTk,1355
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junifer/pipeline/tests/test_workdir_manager.py,sha256=E1WY4C-GDsx2c49sePqr1WR_Y3nZ1kiRn4Veu506uTs,2801
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junifer/preprocess/__init__.py,sha256=lpkT_mhsRjkmk676u-jWDMlPTp1Kdls-KLsXHrhiDyw,392
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junifer/preprocess/base.py,sha256=eahA4sjtW5t89Q7oVYEWHknGiC3KatspiMXBQ6TAiLg,6648
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junifer/preprocess/confounds/__init__.py,sha256=EDlcD9jy8O9xluJr6XOnFXtjGCDVqwg6sDIRDMbM8ZU,235
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junifer/preprocess/confounds/fmriprep_confound_remover.py,sha256=
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junifer/preprocess/confounds/tests/test_fmriprep_confound_remover.py,sha256=xN9tPkktuRHQtmY1UOP0H_sXT7LXPY282kMgYkoQTFE,19973
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junifer-0.0.5.dev93.dist-info/LICENSE.md,sha256=MqCnOBu8uXsEOzRZWh9EBVfVz-kE9NkXcLCrtGXo2yU,34354
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junifer-0.0.5.dev93.dist-info/METADATA,sha256=GPQBJL5Fvtivl1q6VYeAV6eoIDVCjubyMZCizh3mn9k,8234
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junifer-0.0.5.dev93.dist-info/WHEEL,sha256=GJ7t_kWBFywbagK5eo9IoUwLW6oyOeTKmQ-9iHFVNxQ,92
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junifer-0.0.5.dev93.dist-info/entry_points.txt,sha256=DxFvKq0pOqRunAK0FxwJcoDfV1-dZvsFDpD5HRqSDhw,48
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junifer-0.0.5.dev93.dist-info/top_level.txt,sha256=4bAq1R2QFQ4b3hohjys2JBvxrl0GKk5LNFzYvz9VGcA,8
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