junifer 0.0.5.dev68__py3-none-any.whl → 0.0.5.dev86__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- junifer/_version.py +2 -2
- junifer/api/functions.py +1 -1
- junifer/configs/juseless/datagrabbers/tests/test_ucla.py +1 -3
- junifer/configs/juseless/datagrabbers/ucla.py +9 -9
- junifer/data/masks.py +10 -22
- junifer/data/parcellations.py +1 -1
- junifer/data/tests/test_masks.py +8 -28
- junifer/datagrabber/aomic/id1000.py +34 -38
- junifer/datagrabber/aomic/piop1.py +33 -37
- junifer/datagrabber/aomic/piop2.py +35 -39
- junifer/datagrabber/aomic/tests/test_id1000.py +10 -11
- junifer/datagrabber/aomic/tests/test_piop1.py +10 -11
- junifer/datagrabber/aomic/tests/test_piop2.py +10 -11
- junifer/datagrabber/datalad_base.py +10 -1
- junifer/datagrabber/dmcc13_benchmark.py +36 -54
- junifer/datagrabber/pattern.py +116 -46
- junifer/datagrabber/pattern_datalad.py +22 -12
- junifer/datagrabber/tests/test_datagrabber_utils.py +15 -9
- junifer/datagrabber/tests/test_dmcc13_benchmark.py +46 -19
- junifer/datagrabber/utils.py +127 -54
- junifer/datareader/default.py +91 -42
- junifer/preprocess/base.py +2 -2
- junifer/preprocess/confounds/fmriprep_confound_remover.py +44 -60
- junifer/preprocess/confounds/tests/test_fmriprep_confound_remover.py +72 -113
- junifer/testing/datagrabbers.py +5 -5
- junifer/testing/tests/test_partlycloudytesting_datagrabber.py +7 -7
- {junifer-0.0.5.dev68.dist-info → junifer-0.0.5.dev86.dist-info}/METADATA +1 -1
- {junifer-0.0.5.dev68.dist-info → junifer-0.0.5.dev86.dist-info}/RECORD +33 -33
- {junifer-0.0.5.dev68.dist-info → junifer-0.0.5.dev86.dist-info}/AUTHORS.rst +0 -0
- {junifer-0.0.5.dev68.dist-info → junifer-0.0.5.dev86.dist-info}/LICENSE.md +0 -0
- {junifer-0.0.5.dev68.dist-info → junifer-0.0.5.dev86.dist-info}/WHEEL +0 -0
- {junifer-0.0.5.dev68.dist-info → junifer-0.0.5.dev86.dist-info}/entry_points.txt +0 -0
- {junifer-0.0.5.dev68.dist-info → junifer-0.0.5.dev86.dist-info}/top_level.txt +0 -0
@@ -20,6 +20,7 @@ from junifer.testing import get_testing_data
|
|
20
20
|
from junifer.testing.datagrabbers import (
|
21
21
|
OasisVBMTestingDataGrabber,
|
22
22
|
PartlyCloudyTestingDataGrabber,
|
23
|
+
SPMAuditoryTestingDataGrabber,
|
23
24
|
)
|
24
25
|
|
25
26
|
|
@@ -42,35 +43,10 @@ def test_fMRIPrepConfoundRemover_init() -> None:
|
|
42
43
|
@pytest.mark.parametrize(
|
43
44
|
"input_",
|
44
45
|
[
|
45
|
-
["T1w"],
|
46
46
|
["BOLD"],
|
47
47
|
["T1w", "BOLD"],
|
48
48
|
],
|
49
49
|
)
|
50
|
-
def test_fMRIPrepConfoundRemover_validate_input_errors(
|
51
|
-
input_: List[str],
|
52
|
-
) -> None:
|
53
|
-
"""Test errors for fMRIPrepConfoundRemover validate_input.
|
54
|
-
|
55
|
-
Parameters
|
56
|
-
----------
|
57
|
-
input_ : list of str
|
58
|
-
The input data types.
|
59
|
-
|
60
|
-
"""
|
61
|
-
confound_remover = fMRIPrepConfoundRemover()
|
62
|
-
|
63
|
-
with pytest.raises(ValueError, match="not have the required data"):
|
64
|
-
confound_remover.validate_input(input_)
|
65
|
-
|
66
|
-
|
67
|
-
@pytest.mark.parametrize(
|
68
|
-
"input_",
|
69
|
-
[
|
70
|
-
["BOLD", "BOLD_confounds"],
|
71
|
-
["T1w", "BOLD", "BOLD_confounds"],
|
72
|
-
],
|
73
|
-
)
|
74
50
|
def test_fMRIPrepConfoundRemover_validate_input(input_: List[str]) -> None:
|
75
51
|
"""Test fMRIPrepConfoundRemover validate_input.
|
76
52
|
|
@@ -302,13 +278,13 @@ def test_fMRIPRepConfoundRemover__pick_confounds_fmriprep() -> None:
|
|
302
278
|
with PartlyCloudyTestingDataGrabber() as dg:
|
303
279
|
input = dg["sub-01"]
|
304
280
|
input = reader.fit_transform(input)
|
305
|
-
out1 = confound_remover._pick_confounds(input["
|
281
|
+
out1 = confound_remover._pick_confounds(input["BOLD"]["confounds"])
|
306
282
|
assert set(out1.columns) == {*fmriprep_all_vars, "spike"}
|
307
283
|
|
308
284
|
with PartlyCloudyTestingDataGrabber(reduce_confounds=False) as dg:
|
309
285
|
input = dg["sub-01"]
|
310
286
|
input = reader.fit_transform(input)
|
311
|
-
out2 = confound_remover._pick_confounds(input["
|
287
|
+
out2 = confound_remover._pick_confounds(input["BOLD"]["confounds"])
|
312
288
|
assert set(out2.columns) == {*fmriprep_all_vars, "spike"}
|
313
289
|
|
314
290
|
assert_frame_equal(out1, out2)
|
@@ -348,123 +324,106 @@ def test_fMRIPRepConfoundRemover__pick_confounds_fmriprep_compute() -> None:
|
|
348
324
|
def test_fMRIPrepConfoundRemover__validate_data() -> None:
|
349
325
|
"""Test fMRIPrepConfoundRemover validate data."""
|
350
326
|
confound_remover = fMRIPrepConfoundRemover(strategy={"wm_csf": "full"})
|
351
|
-
|
327
|
+
# Check correct data type
|
352
328
|
with OasisVBMTestingDataGrabber() as dg:
|
353
329
|
element_data = DefaultDataReader().fit_transform(dg["sub-01"])
|
354
330
|
vbm = element_data["VBM_GM"]
|
355
331
|
with pytest.raises(
|
356
332
|
DimensionError, match="incompatible dimensionality"
|
357
333
|
):
|
358
|
-
confound_remover._validate_data(vbm
|
359
|
-
|
360
|
-
with
|
334
|
+
confound_remover._validate_data(vbm)
|
335
|
+
# Check missing nested type in correct data type
|
336
|
+
with SPMAuditoryTestingDataGrabber() as dg:
|
361
337
|
element_data = DefaultDataReader().fit_transform(dg["sub-01"])
|
362
338
|
bold = element_data["BOLD"]
|
363
|
-
|
364
|
-
with pytest.raises(ValueError, match="No extra input"):
|
365
|
-
confound_remover._validate_data(bold, None)
|
339
|
+
# Test confound type
|
366
340
|
with pytest.raises(
|
367
|
-
ValueError, match="`
|
341
|
+
ValueError, match="`BOLD.confounds` data type not provided"
|
368
342
|
):
|
369
|
-
confound_remover._validate_data(bold
|
343
|
+
confound_remover._validate_data(bold)
|
344
|
+
# Test confound data
|
345
|
+
bold["confounds"] = {}
|
370
346
|
with pytest.raises(
|
371
|
-
ValueError, match="`
|
347
|
+
ValueError, match="`BOLD.confounds.data` not provided"
|
372
348
|
):
|
373
|
-
confound_remover._validate_data(bold
|
374
|
-
|
375
|
-
|
376
|
-
|
377
|
-
|
378
|
-
|
379
|
-
|
380
|
-
confound_remover._validate_data(bold, extra_input)
|
381
|
-
|
382
|
-
extra_input = {"BOLD_confounds": {"data": pd.DataFrame()}}
|
349
|
+
confound_remover._validate_data(bold)
|
350
|
+
# Test confound data is valid type
|
351
|
+
bold["confounds"] = {"data": None}
|
352
|
+
with pytest.raises(ValueError, match="must be a `pandas.DataFrame`"):
|
353
|
+
confound_remover._validate_data(bold)
|
354
|
+
# Test confound data dimension mismatch with BOLD
|
355
|
+
bold["confounds"] = {"data": pd.DataFrame()}
|
383
356
|
with pytest.raises(ValueError, match="Image time series and"):
|
384
|
-
confound_remover._validate_data(bold
|
385
|
-
|
386
|
-
|
387
|
-
|
357
|
+
confound_remover._validate_data(bold)
|
358
|
+
# Check nested type variations
|
359
|
+
with PartlyCloudyTestingDataGrabber(reduce_confounds=False) as dg:
|
360
|
+
element_data = DefaultDataReader().fit_transform(dg["sub-01"])
|
361
|
+
# Test format
|
362
|
+
modified_bold = {
|
363
|
+
"data": element_data["BOLD"]["data"],
|
364
|
+
"confounds": {
|
365
|
+
"data": element_data["BOLD"]["confounds"]["data"],
|
366
|
+
"format": "adhoc",
|
367
|
+
},
|
388
368
|
}
|
369
|
+
# Test incorrect format
|
370
|
+
modified_bold["confounds"].update({"format": "wrong"})
|
371
|
+
with pytest.raises(ValueError, match="Invalid confounds format"):
|
372
|
+
confound_remover._validate_data(modified_bold)
|
373
|
+
# Test missing mappings for adhoc
|
374
|
+
modified_bold["confounds"].update({"format": "adhoc"})
|
389
375
|
with pytest.raises(
|
390
|
-
ValueError, match="`
|
376
|
+
ValueError, match="`BOLD.confounds.mappings` need to be set"
|
391
377
|
):
|
392
|
-
confound_remover._validate_data(
|
393
|
-
|
394
|
-
|
395
|
-
|
396
|
-
|
397
|
-
|
398
|
-
|
399
|
-
|
400
|
-
|
401
|
-
|
402
|
-
|
403
|
-
extra_input = {
|
404
|
-
"BOLD_confounds": {
|
405
|
-
"data": element_data["BOLD_confounds"]["data"],
|
406
|
-
"format": "adhoc",
|
407
|
-
}
|
408
|
-
}
|
409
|
-
with pytest.raises(ValueError, match="need to be set"):
|
410
|
-
confound_remover._validate_data(bold, extra_input)
|
411
|
-
|
412
|
-
extra_input = {
|
413
|
-
"BOLD_confounds": {
|
414
|
-
"data": element_data["BOLD_confounds"]["data"],
|
415
|
-
"format": "adhoc",
|
416
|
-
"mappings": {},
|
417
|
-
}
|
418
|
-
}
|
419
|
-
with pytest.raises(ValueError, match="need to be set"):
|
420
|
-
confound_remover._validate_data(bold, extra_input)
|
421
|
-
|
422
|
-
extra_input = {
|
423
|
-
"BOLD_confounds": {
|
424
|
-
"data": element_data["BOLD_confounds"]["data"],
|
425
|
-
"format": "adhoc",
|
378
|
+
confound_remover._validate_data(modified_bold)
|
379
|
+
# Test missing fmriprep mappings for adhoc
|
380
|
+
modified_bold["confounds"].update({"mappings": {}})
|
381
|
+
with pytest.raises(
|
382
|
+
ValueError,
|
383
|
+
match="`BOLD.confounds.mappings.fmriprep` need to be set",
|
384
|
+
):
|
385
|
+
confound_remover._validate_data(modified_bold)
|
386
|
+
# Test incorrect fmriprep mappings for adhoc
|
387
|
+
modified_bold["confounds"].update(
|
388
|
+
{
|
426
389
|
"mappings": {
|
427
390
|
"fmriprep": {
|
428
391
|
"rot_x": "wrong",
|
429
392
|
"rot_y": "rot_z",
|
430
393
|
"rot_z": "rot_y",
|
431
|
-
}
|
432
|
-
}
|
394
|
+
},
|
395
|
+
}
|
433
396
|
}
|
434
|
-
|
397
|
+
)
|
435
398
|
with pytest.raises(ValueError, match=r"names: \['wrong'\]"):
|
436
|
-
confound_remover._validate_data(
|
437
|
-
|
438
|
-
|
439
|
-
|
440
|
-
"data": element_data["BOLD_confounds"]["data"],
|
441
|
-
"format": "adhoc",
|
399
|
+
confound_remover._validate_data(modified_bold)
|
400
|
+
# Test missing fmriprep mappings for adhoc
|
401
|
+
modified_bold["confounds"].update(
|
402
|
+
{
|
442
403
|
"mappings": {
|
443
404
|
"fmriprep": {
|
444
405
|
"wrong": "rot_x",
|
445
406
|
"rot_y": "rot_z",
|
446
407
|
"rot_z": "rot_y",
|
447
|
-
}
|
448
|
-
}
|
408
|
+
},
|
409
|
+
}
|
449
410
|
}
|
450
|
-
|
411
|
+
)
|
451
412
|
with pytest.raises(ValueError, match=r"Missing columns: \['wrong'\]"):
|
452
|
-
confound_remover._validate_data(
|
453
|
-
|
454
|
-
|
455
|
-
|
456
|
-
"data": element_data["BOLD_confounds"]["data"],
|
457
|
-
"format": "adhoc",
|
413
|
+
confound_remover._validate_data(modified_bold)
|
414
|
+
# Test correct adhoc format
|
415
|
+
modified_bold["confounds"].update(
|
416
|
+
{
|
458
417
|
"mappings": {
|
459
418
|
"fmriprep": {
|
460
419
|
"rot_x": "rot_x",
|
461
420
|
"rot_y": "rot_z",
|
462
421
|
"rot_z": "rot_y",
|
463
|
-
}
|
464
|
-
}
|
422
|
+
},
|
423
|
+
}
|
465
424
|
}
|
466
|
-
|
467
|
-
confound_remover._validate_data(
|
425
|
+
)
|
426
|
+
confound_remover._validate_data(modified_bold)
|
468
427
|
|
469
428
|
|
470
429
|
def test_fMRIPrepConfoundRemover_preprocess() -> None:
|
@@ -476,7 +435,9 @@ def test_fMRIPrepConfoundRemover_preprocess() -> None:
|
|
476
435
|
element_data = DefaultDataReader().fit_transform(dg["sub-01"])
|
477
436
|
orig_bold = element_data["BOLD"]["data"].get_fdata().copy()
|
478
437
|
pre_input = element_data["BOLD"]
|
479
|
-
pre_extra_input = {
|
438
|
+
pre_extra_input = {
|
439
|
+
"BOLD": {"confounds": element_data["BOLD"]["confounds"]}
|
440
|
+
}
|
480
441
|
output, _ = confound_remover.preprocess(pre_input, pre_extra_input)
|
481
442
|
trans_bold = output["data"].get_fdata()
|
482
443
|
# Transformation is in place
|
@@ -530,7 +491,7 @@ def test_fMRIPrepConfoundRemover_fit_transform() -> None:
|
|
530
491
|
assert t_meta["t_r"] is None
|
531
492
|
assert t_meta["masks"] is None
|
532
493
|
|
533
|
-
assert "
|
494
|
+
assert "mask" not in output["BOLD"]
|
534
495
|
|
535
496
|
assert "dependencies" in output["BOLD"]["meta"]
|
536
497
|
dependencies = output["BOLD"]["meta"]["dependencies"]
|
@@ -582,9 +543,7 @@ def test_fMRIPrepConfoundRemover_fit_transform_masks() -> None:
|
|
582
543
|
assert "threshold" in t_meta["masks"]["compute_brain_mask"]
|
583
544
|
assert t_meta["masks"]["compute_brain_mask"]["threshold"] == 0.2
|
584
545
|
|
585
|
-
assert "
|
586
|
-
assert "mask_item" in output["BOLD"]
|
587
|
-
assert output["BOLD"]["mask_item"] == "BOLD_mask"
|
546
|
+
assert "mask" in output["BOLD"]
|
588
547
|
|
589
548
|
assert "dependencies" in output["BOLD"]["meta"]
|
590
549
|
dependencies = output["BOLD"]["meta"]["dependencies"]
|
junifer/testing/datagrabbers.py
CHANGED
@@ -181,7 +181,7 @@ class PartlyCloudyTestingDataGrabber(BaseDataGrabber):
|
|
181
181
|
"""Initialize the class."""
|
182
182
|
datadir = tempfile.mkdtemp()
|
183
183
|
# Define types
|
184
|
-
types = ["BOLD"
|
184
|
+
types = ["BOLD"]
|
185
185
|
self.reduce_confounds = reduce_confounds
|
186
186
|
self.age_group = age_group
|
187
187
|
super().__init__(types=types, datadir=datadir)
|
@@ -242,10 +242,10 @@ class PartlyCloudyTestingDataGrabber(BaseDataGrabber):
|
|
242
242
|
out["BOLD"] = {
|
243
243
|
"path": Path(self._dataset["func"][i_sub]),
|
244
244
|
"space": "MNI152NLin2009cAsym",
|
245
|
-
|
246
|
-
|
247
|
-
|
248
|
-
|
245
|
+
"confounds": {
|
246
|
+
"path": Path(self._dataset["confounds"][i_sub]),
|
247
|
+
"format": "fmriprep",
|
248
|
+
},
|
249
249
|
}
|
250
250
|
|
251
251
|
return out
|
@@ -28,13 +28,13 @@ def test_PartlyCloudyTestingDataGrabber() -> None:
|
|
28
28
|
assert out["BOLD"]["path"].exists()
|
29
29
|
assert out["BOLD"]["path"].is_file()
|
30
30
|
|
31
|
-
assert "
|
32
|
-
assert out["
|
33
|
-
assert out["
|
34
|
-
assert "format" in out["
|
35
|
-
assert "fmriprep" == out["
|
31
|
+
assert "confounds" in out["BOLD"]
|
32
|
+
assert out["BOLD"]["confounds"]["path"].exists()
|
33
|
+
assert out["BOLD"]["confounds"]["path"].is_file()
|
34
|
+
assert "format" in out["BOLD"]["confounds"]
|
35
|
+
assert "fmriprep" == out["BOLD"]["confounds"]["format"]
|
36
36
|
|
37
37
|
with PartlyCloudyTestingDataGrabber(reduce_confounds=False) as dg:
|
38
38
|
out = dg["sub-01"]
|
39
|
-
assert "format" in out["
|
40
|
-
assert "fmriprep" == out["
|
39
|
+
assert "format" in out["BOLD"]["confounds"]
|
40
|
+
assert "fmriprep" == out["BOLD"]["confounds"]["format"]
|
@@ -1,6 +1,6 @@
|
|
1
1
|
Metadata-Version: 2.1
|
2
2
|
Name: junifer
|
3
|
-
Version: 0.0.5.
|
3
|
+
Version: 0.0.5.dev86
|
4
4
|
Summary: JUelich NeuroImaging FEature extractoR
|
5
5
|
Author-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Synchon Mandal <s.mandal@fz-juelich.de>
|
6
6
|
Maintainer-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Synchon Mandal <s.mandal@fz-juelich.de>
|
@@ -1,10 +1,10 @@
|
|
1
1
|
junifer/__init__.py,sha256=x1UR2jUcrUdm2HNl-3Qvyi4UUrU6ms5qm2qcmNY7zZk,391
|
2
|
-
junifer/_version.py,sha256=
|
2
|
+
junifer/_version.py,sha256=tHlKxu4A7NZdSkP4AlDO2Vd1oZbG-OnTzclmDpcl29M,426
|
3
3
|
junifer/stats.py,sha256=jN22_qFvWYBU9ZIMnCSzN4iOscWnWrcrUPIdLeDkV64,6163
|
4
4
|
junifer/api/__init__.py,sha256=pSj8V8tmwOAQ3sshWJfRfB-n3z5bcJj3pHOBX4-8ONc,251
|
5
5
|
junifer/api/cli.py,sha256=53pews3mXkJ7DUDSkV51PbitYnuVAdQRkWG-gjO08Uw,16142
|
6
6
|
junifer/api/decorators.py,sha256=8bnwHPAe7VgzKxl--M_e0umdAlTVSzaJQHEJZ5kof5k,2580
|
7
|
-
junifer/api/functions.py,sha256=
|
7
|
+
junifer/api/functions.py,sha256=hkiJhqIRgclWHFmThGFntAXno9vFI38FQfBrEwm1-AY,13047
|
8
8
|
junifer/api/parser.py,sha256=a3SSC2xO-PF1pqXZXFq8Sh9aVd-dmHolJbCkGyOUTAM,4416
|
9
9
|
junifer/api/utils.py,sha256=dyjTdPMwX9qeCrn8SQT2Pjshfnu-y1FEyujV7lCzvm0,3333
|
10
10
|
junifer/api/queue_context/__init__.py,sha256=_yXJ8woTxLNLoSR3yLxAW7MtC5sa-oCRxewsZ9D3j98,271
|
@@ -49,17 +49,17 @@ junifer/configs/juseless/datagrabbers/__init__.py,sha256=kLcoJyUZMrrAmgWynuTvute
|
|
49
49
|
junifer/configs/juseless/datagrabbers/aomic_id1000_vbm.py,sha256=4Vf1AC6WSDkCaYXKJXEkJHS2UsdON57wdhj_oqpK-vw,1428
|
50
50
|
junifer/configs/juseless/datagrabbers/camcan_vbm.py,sha256=GXnDML55kKEGSb38olRUWL_AFdN9IvPViEGP9CaDTUQ,1497
|
51
51
|
junifer/configs/juseless/datagrabbers/ixi_vbm.py,sha256=mCuv-27AsN9bReoq3Fo7CJaC2Jkmd5Y1sFEk5ExGqUo,2263
|
52
|
-
junifer/configs/juseless/datagrabbers/ucla.py,sha256=
|
52
|
+
junifer/configs/juseless/datagrabbers/ucla.py,sha256=2ZjK6n9eJ9terKm8tDqwAyOIbYgvssQMI0dIBKrUXCc,4846
|
53
53
|
junifer/configs/juseless/datagrabbers/ukb_vbm.py,sha256=d2N3X1OVrcmkKNVkruNDKzU2iqBH9oGUnhfxkg0-7aw,1485
|
54
54
|
junifer/configs/juseless/datagrabbers/tests/test_aomic_id1000_vbm.py,sha256=Y_npFmmj0MN0TYv8jaxVMgFHLMQLZ8vXl8lWQKvOYbc,1001
|
55
55
|
junifer/configs/juseless/datagrabbers/tests/test_camcan_vbm.py,sha256=o0dzptS97pxrWaY7I1m0dpJtsnAwmIXNqdU9ABTWCqI,975
|
56
56
|
junifer/configs/juseless/datagrabbers/tests/test_ixi_vbm.py,sha256=8jxpNZelXwpJGvA5LOfpso2X8yt1chvERAYmv76hS_g,1252
|
57
|
-
junifer/configs/juseless/datagrabbers/tests/test_ucla.py,sha256=
|
57
|
+
junifer/configs/juseless/datagrabbers/tests/test_ucla.py,sha256=NfEKlpaMNImiPLGyETDDCMoWZ7_oHGsiVAbQNYsfi3o,3252
|
58
58
|
junifer/configs/juseless/datagrabbers/tests/test_ukb_vbm.py,sha256=b9hjc1mgO--PSRC3id2EzzfE2yWNsuZ2UI47a6sfGZU,1025
|
59
59
|
junifer/data/__init__.py,sha256=Z3CdIXpXK3Avxm2Qj7MsuNNZSM8Pc5KBa9D51DYd1v0,602
|
60
60
|
junifer/data/coordinates.py,sha256=AovvAdPhl9oQoH4T24jhzW0UuNL8wRYtkYrYHhvtRC8,12381
|
61
|
-
junifer/data/masks.py,sha256=
|
62
|
-
junifer/data/parcellations.py,sha256=
|
61
|
+
junifer/data/masks.py,sha256=ii7wEnJjnVR22KgigvdxIE2jsvwW7PrfKnyMhMRmZUU,20810
|
62
|
+
junifer/data/parcellations.py,sha256=S2Hs_FwvqWZ_rFEumTW5b2aX2iyZEw_9KGAO9Z0-dxM,65343
|
63
63
|
junifer/data/template_spaces.py,sha256=2dD9GIBgsd764ol3ZvmHL11VrsaBC78CwrMaMh4TCGQ,5756
|
64
64
|
junifer/data/utils.py,sha256=Jmbc7SLzy4nLP_zkWv_aJzb1MZ27tutJ98ifsECCamM,1295
|
65
65
|
junifer/data/VOIs/meta/AutobiographicalMemory_VOIs.txt,sha256=9af38naeL18Tlt_gy_ep6vyTAxOB336JYjbo5FvP8PQ,686
|
@@ -86,37 +86,37 @@ junifer/data/masks/vickery-patil/CAT12_IXI555_MNI152_TMP_GS_GMprob0.2_clean_3mm.
|
|
86
86
|
junifer/data/masks/vickery-patil/GMprob0.2_cortex_3mm_NA_rm.nii.gz,sha256=jfMe_4H9XEnArYms5bSQbqS2V1_HbLHTfI5amQa_Pes,8700
|
87
87
|
junifer/data/tests/test_coordinates.py,sha256=BNkz9qFbnwAI0oVlIm_XrT-z4Vsia_rMtMVaoFXT6mU,4328
|
88
88
|
junifer/data/tests/test_data_utils.py,sha256=_DaiC8K79gs9HFHxr-udNeE2YTM6JA0-1i-K2cqK9qA,1087
|
89
|
-
junifer/data/tests/test_masks.py,sha256=
|
89
|
+
junifer/data/tests/test_masks.py,sha256=wqmG7N8Fia2faFCAyqfX7WGs0gFAo5qXGKytv0KAgYA,15183
|
90
90
|
junifer/data/tests/test_parcellations.py,sha256=ZEU1VHIK0AyxpclcJhG_0rQU0phaBU_dHP7Erfi3mN8,38222
|
91
91
|
junifer/data/tests/test_template_spaces.py,sha256=PJulN7xHpAcSOTY-UzTG_WPywZEBSlAZGiNG4gzk1_8,3144
|
92
92
|
junifer/datagrabber/__init__.py,sha256=fhHKsZyBeqCFJJMr53VF6EUkNrFuUZkNR8QZbaoHTNg,680
|
93
93
|
junifer/datagrabber/base.py,sha256=KgMSKfkwd4yLW4PhoJDoWMgcDkGmDoIs6jkgKyOJd9A,6303
|
94
|
-
junifer/datagrabber/datalad_base.py,sha256=
|
95
|
-
junifer/datagrabber/dmcc13_benchmark.py,sha256=
|
94
|
+
junifer/datagrabber/datalad_base.py,sha256=gP-DsyCd2F8W-aF2PXOg99Ntp2bj8QEtb535y06q39o,11009
|
95
|
+
junifer/datagrabber/dmcc13_benchmark.py,sha256=se9F6QVw9WX22MNld33OQv_BtdW-yPvXXu6kYykxLNw,12225
|
96
96
|
junifer/datagrabber/multiple.py,sha256=eXQIsvSNvD8GuEITjMaMoi1GwoeyWXXbQMRi-f2qgc4,4923
|
97
|
-
junifer/datagrabber/pattern.py,sha256=
|
98
|
-
junifer/datagrabber/pattern_datalad.py,sha256=
|
99
|
-
junifer/datagrabber/utils.py,sha256=
|
97
|
+
junifer/datagrabber/pattern.py,sha256=w1aTL5xZRH9vq3-RofdmW-d_1t2OrAKRL0McCQErHGE,15273
|
98
|
+
junifer/datagrabber/pattern_datalad.py,sha256=R3LMeknT7tAXs2AN0XVPRf6tGkCMPgDfkNT2bfi7UNc,4526
|
99
|
+
junifer/datagrabber/utils.py,sha256=s0Ife1qKEwXP47GfoxQ0qGqSP8L8ZNAms3HAvrSFoGI,9406
|
100
100
|
junifer/datagrabber/aomic/__init__.py,sha256=R7yrRVBWsBW25CH0fw-KHpFwb_EC-MlPKDzssGfj5A0,281
|
101
|
-
junifer/datagrabber/aomic/id1000.py,sha256=
|
102
|
-
junifer/datagrabber/aomic/piop1.py,sha256=
|
103
|
-
junifer/datagrabber/aomic/piop2.py,sha256=
|
104
|
-
junifer/datagrabber/aomic/tests/test_id1000.py,sha256=
|
105
|
-
junifer/datagrabber/aomic/tests/test_piop1.py,sha256=
|
106
|
-
junifer/datagrabber/aomic/tests/test_piop2.py,sha256=
|
101
|
+
junifer/datagrabber/aomic/id1000.py,sha256=DGQVMgSv8HoUH6qj_WnBQTMunaJNSlVihjfiCmICN2c,5963
|
102
|
+
junifer/datagrabber/aomic/piop1.py,sha256=CR4L9VJk-lJnoYTJDOAzs39Z_fgFQAYt2pvAmKfGl-g,8382
|
103
|
+
junifer/datagrabber/aomic/piop2.py,sha256=_vrUnFyfhwFjWR3O23-ksVXlj49rc-q-eK1lVytIquo,8001
|
104
|
+
junifer/datagrabber/aomic/tests/test_id1000.py,sha256=jKkhvglMsvEK06sSJXj4vuFvH2YR9CfEbcnElX_HU-o,4683
|
105
|
+
junifer/datagrabber/aomic/tests/test_piop1.py,sha256=GuNllX8VbEbpGsPcEWf3ssRzcSrIj4RlLCFfTsbF-tU,5449
|
106
|
+
junifer/datagrabber/aomic/tests/test_piop2.py,sha256=ydQhrF4fQsp6j6M79p68r8SKmDcwHwQccLKDW4lbztI,5248
|
107
107
|
junifer/datagrabber/hcp1200/__init__.py,sha256=zy4Qq1_m3vECEhioG-UDteco2b5cni_8xuElICaRtt4,189
|
108
108
|
junifer/datagrabber/hcp1200/datalad_hcp1200.py,sha256=p5Bbg09qoM46km9eFSlspwLwOe6LMJFSIZ9NC9E2lmc,2432
|
109
109
|
junifer/datagrabber/hcp1200/hcp1200.py,sha256=ohXHmrQHWjqRZSEXI6E5zla1d_t6LZTbv-cAj79w3PU,6091
|
110
110
|
junifer/datagrabber/hcp1200/tests/test_hcp1200.py,sha256=KJ-Jq01l0a6TaboG898qjBdPTHG1E3PZtHCjJ7n-1X0,10765
|
111
111
|
junifer/datagrabber/tests/test_base.py,sha256=fZdVhNhvfht9lpTHrAUf5E6mAfNNUP7OTQ5KLaBQ1gI,3506
|
112
|
-
junifer/datagrabber/tests/test_datagrabber_utils.py,sha256=
|
112
|
+
junifer/datagrabber/tests/test_datagrabber_utils.py,sha256=x1nqFiHI9xHBQFwXji0DPUG8crVoEzw6zmi3pKdhJQk,6513
|
113
113
|
junifer/datagrabber/tests/test_datalad_base.py,sha256=SYxUB9_4YPMfrb7iJM-aJCWbGa3EJfYz31wAUCNa03s,16285
|
114
|
-
junifer/datagrabber/tests/test_dmcc13_benchmark.py,sha256=
|
114
|
+
junifer/datagrabber/tests/test_dmcc13_benchmark.py,sha256=DcqkDXXBoabHFVbxekGR2NZyGeugGlxpOwXIwy38Ofg,9109
|
115
115
|
junifer/datagrabber/tests/test_multiple.py,sha256=Mx3xfDrQiWG2W5MW24P5L2XiSeALpJ2-jFlzWkKtu9w,5659
|
116
116
|
junifer/datagrabber/tests/test_pattern.py,sha256=Zmwg79f-qs6AEPVoFpooOquK7rm1hsmgkzuo11BG5PE,8019
|
117
117
|
junifer/datagrabber/tests/test_pattern_datalad.py,sha256=hxw_aXBwHjUo-aUrHescBA2dn1bSJxh-0oV8495iIEA,6483
|
118
118
|
junifer/datareader/__init__.py,sha256=_vtrLX_vxlHFD90gPa3gWnhTuvfWM7Uzyj6y8ZPaWm8,259
|
119
|
-
junifer/datareader/default.py,sha256=
|
119
|
+
junifer/datareader/default.py,sha256=_ntvkcF0H089bHwj0VOLTKWp8RvP7qy2HyieWHuRp2c,6680
|
120
120
|
junifer/datareader/tests/test_default_reader.py,sha256=9dPZSkba1YQjFsA0XwdUbx5sq8DVIEZoy_WfMAcvRus,5220
|
121
121
|
junifer/external/__init__.py,sha256=CBB7eQul2hf-WWwT_PYFV1MS9KkXlZBO7oQWWVLgB_I,110
|
122
122
|
junifer/external/h5io/h5io/__init__.py,sha256=LG7ru_Rt3EOE2H4PGYfBhC12Iax3yeTquZkd8TICiKk,469
|
@@ -208,10 +208,10 @@ junifer/pipeline/tests/test_registry.py,sha256=rYN0pO3gSueQ6XsasEM9VU5BkLyaNl8Wa
|
|
208
208
|
junifer/pipeline/tests/test_update_meta_mixin.py,sha256=UeWwpUi-Q5WVd36Fgfn_utXplSVXMSjLcdO2mR2xLTk,1355
|
209
209
|
junifer/pipeline/tests/test_workdir_manager.py,sha256=E1WY4C-GDsx2c49sePqr1WR_Y3nZ1kiRn4Veu506uTs,2801
|
210
210
|
junifer/preprocess/__init__.py,sha256=lpkT_mhsRjkmk676u-jWDMlPTp1Kdls-KLsXHrhiDyw,392
|
211
|
-
junifer/preprocess/base.py,sha256=
|
211
|
+
junifer/preprocess/base.py,sha256=eahA4sjtW5t89Q7oVYEWHknGiC3KatspiMXBQ6TAiLg,6648
|
212
212
|
junifer/preprocess/confounds/__init__.py,sha256=EDlcD9jy8O9xluJr6XOnFXtjGCDVqwg6sDIRDMbM8ZU,235
|
213
|
-
junifer/preprocess/confounds/fmriprep_confound_remover.py,sha256=
|
214
|
-
junifer/preprocess/confounds/tests/test_fmriprep_confound_remover.py,sha256=
|
213
|
+
junifer/preprocess/confounds/fmriprep_confound_remover.py,sha256=wxKiCIygaRo0WDQD4onE9mPanQXoJHxuabpfwFe7B9I,20111
|
214
|
+
junifer/preprocess/confounds/tests/test_fmriprep_confound_remover.py,sha256=xN9tPkktuRHQtmY1UOP0H_sXT7LXPY282kMgYkoQTFE,19973
|
215
215
|
junifer/preprocess/smoothing/__init__.py,sha256=3l8nay8Zm_BIZLEj4CwmIye5-q7lQ_niGO_Cv4Hd21c,151
|
216
216
|
junifer/preprocess/smoothing/_afni_smoothing.py,sha256=FLJIrlYGxMT8rJdhV3LjALFIC9EPp902OuXt0FqAA_s,3266
|
217
217
|
junifer/preprocess/smoothing/_fsl_smoothing.py,sha256=ZBdP4VsaQEYD9JYUitAXSccwvP3GZ0FyqhriV8gJxyk,3035
|
@@ -236,12 +236,12 @@ junifer/storage/tests/test_sqlite.py,sha256=JPfE6r34o86XkKaB6yjMVmO_2vUV40DjsaHI
|
|
236
236
|
junifer/storage/tests/test_storage_base.py,sha256=YzgfspuggzXejyPIoRCPST3ZzH9Pi7dgl0IHN7kynXM,3071
|
237
237
|
junifer/storage/tests/test_utils.py,sha256=vRGhbeOsSn2Izhjh5AaaJkp6X2EoIQVH3a-9COFVnzg,11854
|
238
238
|
junifer/testing/__init__.py,sha256=LYkax9qpZlxcZnMpZLlvnPSmUr_JoF_CjO3gugvj1Co,214
|
239
|
-
junifer/testing/datagrabbers.py,sha256=
|
239
|
+
junifer/testing/datagrabbers.py,sha256=SQGjYCTLIXpGOklnQ1RMmp6MvXaDHjOYeRj4pkqJJvQ,6476
|
240
240
|
junifer/testing/registry.py,sha256=iGH3hAt36VtvnZO7UQjybHGh2FI8vo1InY3uDSct5Ps,720
|
241
241
|
junifer/testing/utils.py,sha256=Qgf1ZPk-V1jU2g82a7K0P43VAxbTjOnnBfdV-9wDuMo,558
|
242
242
|
junifer/testing/data/sub-0001_task-anticipation_acq-seq_desc-confounds_regressors.tsv,sha256=iDY1apF5caxnyGqvBYWer5JRKQIfuOwoT-SzzsgL59s,406849
|
243
243
|
junifer/testing/tests/test_oasisvmbtesting_datagrabber.py,sha256=BtfExi4VF-jZsi5A3hHS_EGm2O_bJoXnxWF44Z_4i24,794
|
244
|
-
junifer/testing/tests/test_partlycloudytesting_datagrabber.py,sha256=
|
244
|
+
junifer/testing/tests/test_partlycloudytesting_datagrabber.py,sha256=ggU8XQQ6F0HSCh9VkbNGoaZM6CUxKXKlcuf_kGkrRF4,1297
|
245
245
|
junifer/testing/tests/test_spmauditory_datagrabber.py,sha256=1G1emk-Ze59HiNLaYsyIz5O1YGW9darcqlzvhE-J_Mc,919
|
246
246
|
junifer/testing/tests/test_testing_registry.py,sha256=oerticBaPRaRZm3yANzInLac0Mqph3Y0aZPQFayu7xA,827
|
247
247
|
junifer/tests/test_main.py,sha256=GMff7jlisGM9_FsiUwWDte43j-KQJGFRYZpwRRqTkd8,373
|
@@ -253,10 +253,10 @@ junifer/utils/logging.py,sha256=furcU3XIUpUvnpe4PEwzWWIWgmH4j2ZA4MQdvSGWjj0,9216
|
|
253
253
|
junifer/utils/tests/test_fs.py,sha256=WQS7cKlKEZ742CIuiOYYpueeAhY9PqlastfDVpVVtvE,923
|
254
254
|
junifer/utils/tests/test_helpers.py,sha256=k5qqfxK8dFyuewTJyR1Qn6-nFaYNuVr0ysc18bfPjyU,929
|
255
255
|
junifer/utils/tests/test_logging.py,sha256=l8oo-AiBV7H6_IzlsNcj__cLeZBUvgIGoaMszD9VaJg,7754
|
256
|
-
junifer-0.0.5.
|
257
|
-
junifer-0.0.5.
|
258
|
-
junifer-0.0.5.
|
259
|
-
junifer-0.0.5.
|
260
|
-
junifer-0.0.5.
|
261
|
-
junifer-0.0.5.
|
262
|
-
junifer-0.0.5.
|
256
|
+
junifer-0.0.5.dev86.dist-info/AUTHORS.rst,sha256=rmULKpchpSol4ExWFdm-qu4fkpSZPYqIESVJBZtGb6E,163
|
257
|
+
junifer-0.0.5.dev86.dist-info/LICENSE.md,sha256=MqCnOBu8uXsEOzRZWh9EBVfVz-kE9NkXcLCrtGXo2yU,34354
|
258
|
+
junifer-0.0.5.dev86.dist-info/METADATA,sha256=czsUrw6gz_iDxuAzASxfrFxc1EZzRwLbZliDG4dE0Cc,8234
|
259
|
+
junifer-0.0.5.dev86.dist-info/WHEEL,sha256=GJ7t_kWBFywbagK5eo9IoUwLW6oyOeTKmQ-9iHFVNxQ,92
|
260
|
+
junifer-0.0.5.dev86.dist-info/entry_points.txt,sha256=DxFvKq0pOqRunAK0FxwJcoDfV1-dZvsFDpD5HRqSDhw,48
|
261
|
+
junifer-0.0.5.dev86.dist-info/top_level.txt,sha256=4bAq1R2QFQ4b3hohjys2JBvxrl0GKk5LNFzYvz9VGcA,8
|
262
|
+
junifer-0.0.5.dev86.dist-info/RECORD,,
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|