junifer 0.0.5.dev62__py3-none-any.whl → 0.0.5.dev86__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (40) hide show
  1. junifer/_version.py +2 -2
  2. junifer/api/cli.py +26 -0
  3. junifer/api/functions.py +1 -1
  4. junifer/api/res/freesurfer/mri_binarize +3 -0
  5. junifer/api/res/freesurfer/mri_mc +3 -0
  6. junifer/api/res/freesurfer/mri_pretess +3 -0
  7. junifer/api/res/freesurfer/mris_convert +3 -0
  8. junifer/api/res/freesurfer/run_freesurfer_docker.sh +61 -0
  9. junifer/configs/juseless/datagrabbers/tests/test_ucla.py +1 -3
  10. junifer/configs/juseless/datagrabbers/ucla.py +9 -9
  11. junifer/data/masks.py +10 -22
  12. junifer/data/parcellations.py +1 -1
  13. junifer/data/tests/test_masks.py +8 -28
  14. junifer/datagrabber/aomic/id1000.py +34 -38
  15. junifer/datagrabber/aomic/piop1.py +33 -37
  16. junifer/datagrabber/aomic/piop2.py +35 -39
  17. junifer/datagrabber/aomic/tests/test_id1000.py +10 -11
  18. junifer/datagrabber/aomic/tests/test_piop1.py +10 -11
  19. junifer/datagrabber/aomic/tests/test_piop2.py +10 -11
  20. junifer/datagrabber/datalad_base.py +10 -1
  21. junifer/datagrabber/dmcc13_benchmark.py +36 -54
  22. junifer/datagrabber/pattern.py +116 -46
  23. junifer/datagrabber/pattern_datalad.py +22 -12
  24. junifer/datagrabber/tests/test_datagrabber_utils.py +15 -9
  25. junifer/datagrabber/tests/test_dmcc13_benchmark.py +46 -19
  26. junifer/datagrabber/utils.py +127 -54
  27. junifer/datareader/default.py +91 -42
  28. junifer/pipeline/utils.py +64 -1
  29. junifer/preprocess/base.py +2 -2
  30. junifer/preprocess/confounds/fmriprep_confound_remover.py +44 -60
  31. junifer/preprocess/confounds/tests/test_fmriprep_confound_remover.py +72 -113
  32. junifer/testing/datagrabbers.py +5 -5
  33. junifer/testing/tests/test_partlycloudytesting_datagrabber.py +7 -7
  34. {junifer-0.0.5.dev62.dist-info → junifer-0.0.5.dev86.dist-info}/METADATA +1 -1
  35. {junifer-0.0.5.dev62.dist-info → junifer-0.0.5.dev86.dist-info}/RECORD +40 -35
  36. {junifer-0.0.5.dev62.dist-info → junifer-0.0.5.dev86.dist-info}/AUTHORS.rst +0 -0
  37. {junifer-0.0.5.dev62.dist-info → junifer-0.0.5.dev86.dist-info}/LICENSE.md +0 -0
  38. {junifer-0.0.5.dev62.dist-info → junifer-0.0.5.dev86.dist-info}/WHEEL +0 -0
  39. {junifer-0.0.5.dev62.dist-info → junifer-0.0.5.dev86.dist-info}/entry_points.txt +0 -0
  40. {junifer-0.0.5.dev62.dist-info → junifer-0.0.5.dev86.dist-info}/top_level.txt +0 -0
@@ -1,10 +1,10 @@
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  junifer/__init__.py,sha256=x1UR2jUcrUdm2HNl-3Qvyi4UUrU6ms5qm2qcmNY7zZk,391
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- junifer/_version.py,sha256=hgHhCEpD3JpS1CgIK8NxTVb-Oy5VWX6RF9_cs92ZylU,426
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+ junifer/_version.py,sha256=tHlKxu4A7NZdSkP4AlDO2Vd1oZbG-OnTzclmDpcl29M,426
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  junifer/stats.py,sha256=jN22_qFvWYBU9ZIMnCSzN4iOscWnWrcrUPIdLeDkV64,6163
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  junifer/api/__init__.py,sha256=pSj8V8tmwOAQ3sshWJfRfB-n3z5bcJj3pHOBX4-8ONc,251
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- junifer/api/cli.py,sha256=wtU7Rv9tDIT-4KQAkG6WxiE6mop3cuz6XxGDewceHPs,15329
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+ junifer/api/cli.py,sha256=53pews3mXkJ7DUDSkV51PbitYnuVAdQRkWG-gjO08Uw,16142
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  junifer/api/decorators.py,sha256=8bnwHPAe7VgzKxl--M_e0umdAlTVSzaJQHEJZ5kof5k,2580
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- junifer/api/functions.py,sha256=zCWLXDZ_cAqRZ5bFeky0KeqBztuoa6L3-djI65tqtpY,13055
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+ junifer/api/functions.py,sha256=hkiJhqIRgclWHFmThGFntAXno9vFI38FQfBrEwm1-AY,13047
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  junifer/api/parser.py,sha256=a3SSC2xO-PF1pqXZXFq8Sh9aVd-dmHolJbCkGyOUTAM,4416
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  junifer/api/utils.py,sha256=dyjTdPMwX9qeCrn8SQT2Pjshfnu-y1FEyujV7lCzvm0,3333
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  junifer/api/queue_context/__init__.py,sha256=_yXJ8woTxLNLoSR3yLxAW7MtC5sa-oCRxewsZ9D3j98,271
@@ -26,6 +26,11 @@ junifer/api/res/ants/ResampleImage,sha256=oJKZ31rBAW20ETozB8Ub5SbXMuhmZfrerpJTnR
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  junifer/api/res/ants/antsApplyTransforms,sha256=SqlQEJ2RMMw_qGyDaNTXKzQqO7Bvrm6y5SEPmyqHiYc,57
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  junifer/api/res/ants/antsApplyTransformsToPoints,sha256=lqyvQGo8oI-RNpNlRqz-BvLHh7Th5HQgsDZjHF6nEeI,65
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  junifer/api/res/ants/run_ants_docker.sh,sha256=d6lZ9CCPP3nsCALhW4T4tI67gyUSiM4AuXj5JPKTLtA,1119
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+ junifer/api/res/freesurfer/mri_binarize,sha256=d6tjwyOTvLxaMcmUMaeYdR6gE0aI0Bj7ITnDLO3eNdk,56
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+ junifer/api/res/freesurfer/mri_mc,sha256=sTVbj27M_rjs1RIj6dyp_OTSN4ZB3Q_7f2A5z-ri1QA,50
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+ junifer/api/res/freesurfer/mri_pretess,sha256=BxhyeD8M3jxIpA_1i6sMAHcsaBQQtvfPu2i1u_nGFBg,55
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+ junifer/api/res/freesurfer/mris_convert,sha256=7r6L2nQlBNUMJwtsRiIicU_LvKi5GQ9pQUkbDP__p_Q,56
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+ junifer/api/res/freesurfer/run_freesurfer_docker.sh,sha256=zn6fa0lNAMx3KNZqLcjUYhabpCmcqSETBtqqiqiRQAY,1848
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  junifer/api/res/fsl/applywarp,sha256=DBgHfsn1yXWq0t-P7J0YvrjjJNgiblwDsh9L1hF9v_w,46
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  junifer/api/res/fsl/flirt,sha256=tSjiUco8ui8AbHD7mTzChEwbR0Rf_4iJTgzYTPF_WuQ,42
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  junifer/api/res/fsl/img2imgcoord,sha256=Zmaw3oJYrEltcXiPyEubXry9ppAq3SND52tdDWGgeZk,49
@@ -44,17 +49,17 @@ junifer/configs/juseless/datagrabbers/__init__.py,sha256=kLcoJyUZMrrAmgWynuTvute
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  junifer/configs/juseless/datagrabbers/aomic_id1000_vbm.py,sha256=4Vf1AC6WSDkCaYXKJXEkJHS2UsdON57wdhj_oqpK-vw,1428
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  junifer/configs/juseless/datagrabbers/camcan_vbm.py,sha256=GXnDML55kKEGSb38olRUWL_AFdN9IvPViEGP9CaDTUQ,1497
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  junifer/configs/juseless/datagrabbers/ixi_vbm.py,sha256=mCuv-27AsN9bReoq3Fo7CJaC2Jkmd5Y1sFEk5ExGqUo,2263
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- junifer/configs/juseless/datagrabbers/ucla.py,sha256=C14OW7eI2kruJIqgAsd_PtJTyW5R8wp9lDOpQOnfarM,4843
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+ junifer/configs/juseless/datagrabbers/ucla.py,sha256=2ZjK6n9eJ9terKm8tDqwAyOIbYgvssQMI0dIBKrUXCc,4846
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  junifer/configs/juseless/datagrabbers/ukb_vbm.py,sha256=d2N3X1OVrcmkKNVkruNDKzU2iqBH9oGUnhfxkg0-7aw,1485
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  junifer/configs/juseless/datagrabbers/tests/test_aomic_id1000_vbm.py,sha256=Y_npFmmj0MN0TYv8jaxVMgFHLMQLZ8vXl8lWQKvOYbc,1001
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  junifer/configs/juseless/datagrabbers/tests/test_camcan_vbm.py,sha256=o0dzptS97pxrWaY7I1m0dpJtsnAwmIXNqdU9ABTWCqI,975
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  junifer/configs/juseless/datagrabbers/tests/test_ixi_vbm.py,sha256=8jxpNZelXwpJGvA5LOfpso2X8yt1chvERAYmv76hS_g,1252
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- junifer/configs/juseless/datagrabbers/tests/test_ucla.py,sha256=fFxllR0yvt7hiQYdSXJkl9_05UwemKfcp1vC6xf0X-U,3315
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+ junifer/configs/juseless/datagrabbers/tests/test_ucla.py,sha256=NfEKlpaMNImiPLGyETDDCMoWZ7_oHGsiVAbQNYsfi3o,3252
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  junifer/configs/juseless/datagrabbers/tests/test_ukb_vbm.py,sha256=b9hjc1mgO--PSRC3id2EzzfE2yWNsuZ2UI47a6sfGZU,1025
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  junifer/data/__init__.py,sha256=Z3CdIXpXK3Avxm2Qj7MsuNNZSM8Pc5KBa9D51DYd1v0,602
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  junifer/data/coordinates.py,sha256=AovvAdPhl9oQoH4T24jhzW0UuNL8wRYtkYrYHhvtRC8,12381
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- junifer/data/masks.py,sha256=x2vjMLRRGWt0fRGJ67_TjAdrrHZLE0VVnr3KizSbMnI,21427
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- junifer/data/parcellations.py,sha256=emjjttFE7v1TN_4YdeDdahuOOGiXapuFkfu8ur9TVNQ,65345
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+ junifer/data/masks.py,sha256=ii7wEnJjnVR22KgigvdxIE2jsvwW7PrfKnyMhMRmZUU,20810
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+ junifer/data/parcellations.py,sha256=S2Hs_FwvqWZ_rFEumTW5b2aX2iyZEw_9KGAO9Z0-dxM,65343
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  junifer/data/template_spaces.py,sha256=2dD9GIBgsd764ol3ZvmHL11VrsaBC78CwrMaMh4TCGQ,5756
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  junifer/data/VOIs/meta/AutobiographicalMemory_VOIs.txt,sha256=9af38naeL18Tlt_gy_ep6vyTAxOB336JYjbo5FvP8PQ,686
@@ -81,37 +86,37 @@ junifer/data/masks/vickery-patil/CAT12_IXI555_MNI152_TMP_GS_GMprob0.2_clean_3mm.
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  junifer/data/masks/vickery-patil/GMprob0.2_cortex_3mm_NA_rm.nii.gz,sha256=jfMe_4H9XEnArYms5bSQbqS2V1_HbLHTfI5amQa_Pes,8700
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- junifer/data/tests/test_masks.py,sha256=JVg-9ZNkOGaATihLVxg0LAW4DJnvnhln7EJtB3glqLo,15878
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+ junifer/data/tests/test_masks.py,sha256=wqmG7N8Fia2faFCAyqfX7WGs0gFAo5qXGKytv0KAgYA,15183
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- junifer/datagrabber/datalad_base.py,sha256=SsGUJdefdDgAJARBG5kHcbLK2CvvnoEto0TpGZUgnWE,10659
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- junifer/datagrabber/dmcc13_benchmark.py,sha256=rLf6TD9fvjUwuiaqF0vXSDs9w6r3jhNHorKXX7gG8LQ,12945
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+ junifer/datagrabber/datalad_base.py,sha256=gP-DsyCd2F8W-aF2PXOg99Ntp2bj8QEtb535y06q39o,11009
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+ junifer/datagrabber/dmcc13_benchmark.py,sha256=se9F6QVw9WX22MNld33OQv_BtdW-yPvXXu6kYykxLNw,12225
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- junifer/datagrabber/pattern.py,sha256=5XQe0k3iiTID5fbUsShjFKaqkueuPU34ZpzOi1JzFEw,12700
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- junifer/datagrabber/pattern_datalad.py,sha256=y9ptDZEhSj41pf05WNySrj8j4kbi5uIXveFXv4dkKpk,4092
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- junifer/datagrabber/utils.py,sha256=NseewPJvhc0h7Ueyfi_KRUwFfs2V7HspBtYL2Xr9Dik,6965
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+ junifer/datagrabber/pattern.py,sha256=w1aTL5xZRH9vq3-RofdmW-d_1t2OrAKRL0McCQErHGE,15273
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+ junifer/datagrabber/pattern_datalad.py,sha256=R3LMeknT7tAXs2AN0XVPRf6tGkCMPgDfkNT2bfi7UNc,4526
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+ junifer/datagrabber/utils.py,sha256=s0Ife1qKEwXP47GfoxQ0qGqSP8L8ZNAms3HAvrSFoGI,9406
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- junifer/datagrabber/aomic/id1000.py,sha256=5mGBBQUuhWn-HMNrCy9rQd8_ANjrW-AkwRmdllOwSvM,6043
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- junifer/datagrabber/aomic/piop1.py,sha256=GIxuv0n36967jW8v_tdKmvyb24JDF9bXsoI33mU5Y6w,8466
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- junifer/datagrabber/aomic/piop2.py,sha256=LOUj-29xddsT3ktOc5_pjuHrqCwR-1gnx1QmkHfWiOg,8085
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- junifer/datagrabber/aomic/tests/test_piop2.py,sha256=8emWWImX-ltUHJtEFWo8Jng_0kK-Yz66RyA7ddt-By4,5265
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+ junifer/datagrabber/aomic/id1000.py,sha256=DGQVMgSv8HoUH6qj_WnBQTMunaJNSlVihjfiCmICN2c,5963
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+ junifer/datagrabber/aomic/piop1.py,sha256=CR4L9VJk-lJnoYTJDOAzs39Z_fgFQAYt2pvAmKfGl-g,8382
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+ junifer/datagrabber/aomic/piop2.py,sha256=_vrUnFyfhwFjWR3O23-ksVXlj49rc-q-eK1lVytIquo,8001
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+ junifer/datagrabber/aomic/tests/test_id1000.py,sha256=jKkhvglMsvEK06sSJXj4vuFvH2YR9CfEbcnElX_HU-o,4683
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+ junifer/datagrabber/aomic/tests/test_piop1.py,sha256=GuNllX8VbEbpGsPcEWf3ssRzcSrIj4RlLCFfTsbF-tU,5449
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- junifer/preprocess/base.py,sha256=Bn1VdonQ1f_DDPwFMpdaeyfLfNSnROulr-U8HuGQ81A,6697
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+ junifer/preprocess/base.py,sha256=eahA4sjtW5t89Q7oVYEWHknGiC3KatspiMXBQ6TAiLg,6648
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- junifer/preprocess/confounds/fmriprep_confound_remover.py,sha256=UN9B5P-Lqa5mA9jWi3gFJ7iBx1HSyfFrGuTZt4u4h1M,20841
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- junifer/preprocess/confounds/tests/test_fmriprep_confound_remover.py,sha256=noKP4YvghNzVvIRjDHnANCBFmbZiAKcDQG22dwqLvss,20757
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+ junifer/preprocess/confounds/fmriprep_confound_remover.py,sha256=wxKiCIygaRo0WDQD4onE9mPanQXoJHxuabpfwFe7B9I,20111
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+ junifer/preprocess/confounds/tests/test_fmriprep_confound_remover.py,sha256=xN9tPkktuRHQtmY1UOP0H_sXT7LXPY282kMgYkoQTFE,19973
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  junifer/preprocess/smoothing/_fsl_smoothing.py,sha256=ZBdP4VsaQEYD9JYUitAXSccwvP3GZ0FyqhriV8gJxyk,3035
@@ -231,12 +236,12 @@ junifer/storage/tests/test_sqlite.py,sha256=JPfE6r34o86XkKaB6yjMVmO_2vUV40DjsaHI
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  junifer/testing/__init__.py,sha256=LYkax9qpZlxcZnMpZLlvnPSmUr_JoF_CjO3gugvj1Co,214
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- junifer/testing/datagrabbers.py,sha256=tY_dObc2wqSmIrQhcfwR_c8AuVYch51XuhpCKcfA_Oc,6488
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+ junifer/testing/datagrabbers.py,sha256=SQGjYCTLIXpGOklnQ1RMmp6MvXaDHjOYeRj4pkqJJvQ,6476
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  junifer/testing/registry.py,sha256=iGH3hAt36VtvnZO7UQjybHGh2FI8vo1InY3uDSct5Ps,720
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  junifer/testing/data/sub-0001_task-anticipation_acq-seq_desc-confounds_regressors.tsv,sha256=iDY1apF5caxnyGqvBYWer5JRKQIfuOwoT-SzzsgL59s,406849
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  junifer/testing/tests/test_oasisvmbtesting_datagrabber.py,sha256=BtfExi4VF-jZsi5A3hHS_EGm2O_bJoXnxWF44Z_4i24,794
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- junifer/testing/tests/test_partlycloudytesting_datagrabber.py,sha256=1VY71RhGtLD9Yb40o617G4fWRJQkhDoE2N50udyn6ng,1276
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+ junifer/testing/tests/test_partlycloudytesting_datagrabber.py,sha256=ggU8XQQ6F0HSCh9VkbNGoaZM6CUxKXKlcuf_kGkrRF4,1297
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  junifer/tests/test_main.py,sha256=GMff7jlisGM9_FsiUwWDte43j-KQJGFRYZpwRRqTkd8,373
@@ -248,10 +253,10 @@ junifer/utils/logging.py,sha256=furcU3XIUpUvnpe4PEwzWWIWgmH4j2ZA4MQdvSGWjj0,9216
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  junifer/utils/tests/test_logging.py,sha256=l8oo-AiBV7H6_IzlsNcj__cLeZBUvgIGoaMszD9VaJg,7754
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- junifer-0.0.5.dev62.dist-info/AUTHORS.rst,sha256=rmULKpchpSol4ExWFdm-qu4fkpSZPYqIESVJBZtGb6E,163
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- junifer-0.0.5.dev62.dist-info/LICENSE.md,sha256=MqCnOBu8uXsEOzRZWh9EBVfVz-kE9NkXcLCrtGXo2yU,34354
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- junifer-0.0.5.dev62.dist-info/METADATA,sha256=iK9h-P28t4ysBf_C97-FNWO5jaU8uFIFE6nyEN5aiiw,8234
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- junifer-0.0.5.dev62.dist-info/WHEEL,sha256=GJ7t_kWBFywbagK5eo9IoUwLW6oyOeTKmQ-9iHFVNxQ,92
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- junifer-0.0.5.dev62.dist-info/entry_points.txt,sha256=DxFvKq0pOqRunAK0FxwJcoDfV1-dZvsFDpD5HRqSDhw,48
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- junifer-0.0.5.dev62.dist-info/top_level.txt,sha256=4bAq1R2QFQ4b3hohjys2JBvxrl0GKk5LNFzYvz9VGcA,8
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- junifer-0.0.5.dev62.dist-info/RECORD,,
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+ junifer-0.0.5.dev86.dist-info/AUTHORS.rst,sha256=rmULKpchpSol4ExWFdm-qu4fkpSZPYqIESVJBZtGb6E,163
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+ junifer-0.0.5.dev86.dist-info/LICENSE.md,sha256=MqCnOBu8uXsEOzRZWh9EBVfVz-kE9NkXcLCrtGXo2yU,34354
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+ junifer-0.0.5.dev86.dist-info/METADATA,sha256=czsUrw6gz_iDxuAzASxfrFxc1EZzRwLbZliDG4dE0Cc,8234
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+ junifer-0.0.5.dev86.dist-info/WHEEL,sha256=GJ7t_kWBFywbagK5eo9IoUwLW6oyOeTKmQ-9iHFVNxQ,92
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+ junifer-0.0.5.dev86.dist-info/entry_points.txt,sha256=DxFvKq0pOqRunAK0FxwJcoDfV1-dZvsFDpD5HRqSDhw,48
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+ junifer-0.0.5.dev86.dist-info/top_level.txt,sha256=4bAq1R2QFQ4b3hohjys2JBvxrl0GKk5LNFzYvz9VGcA,8
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+ junifer-0.0.5.dev86.dist-info/RECORD,,