junifer 0.0.5.dev48__py3-none-any.whl → 0.0.5.dev55__py3-none-any.whl

junifer/_version.py

@@ -12,5 +12,5 @@ __version__: str
 __version_tuple__: VERSION_TUPLE
 version_tuple: VERSION_TUPLE
 
-__version__ = version = '0.0.5.dev48'
-__version_tuple__ = version_tuple = (0, 0, 5, 'dev48')
+__version__ = version = '0.0.5.dev55'
+__version_tuple__ = version_tuple = (0, 0, 5, 'dev55')

junifer/data/parcellations.py

@@ -326,7 +326,9 @@ def get_parcellation(
             # Call antsApplyTransforms
             run_ext_cmd(name="antsApplyTransforms", cmd=apply_transforms_cmd)
 
-            img = nib.load(warped_parcellation_path)
+            raw_img = nib.load(warped_parcellation_path)
+            # Remove extra dimension added by ANTs
+            img = image.math_img("np.squeeze(img)", img=raw_img)
 
         # Resample parcellation to target image
         img_to_merge = image.resample_to_img(

junifer/markers/parcel_aggregation.py

@@ -208,7 +208,7 @@ class ParcelAggregation(BaseMarker):
             )
             # Get "logical and" version of parcellation and mask
             parcellation_bin = math_img(
-                "np.logical_and(img, mask)",
+                "np.logical_and(img, np.squeeze(mask))",
                 img=parcellation_bin,
                 mask=mask_img,
             )

{junifer-0.0.5.dev48.dist-info → junifer-0.0.5.dev55.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: junifer
-Version: 0.0.5.dev48
+Version: 0.0.5.dev55
 Summary: JUelich NeuroImaging FEature extractoR
 Author-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Synchon Mandal <s.mandal@fz-juelich.de>
 Maintainer-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Synchon Mandal <s.mandal@fz-juelich.de>

{junifer-0.0.5.dev48.dist-info → junifer-0.0.5.dev55.dist-info}/RECORD

@@ -1,5 +1,5 @@
 junifer/__init__.py,sha256=x1UR2jUcrUdm2HNl-3Qvyi4UUrU6ms5qm2qcmNY7zZk,391
-junifer/_version.py,sha256=EyYigB7-PzZ_TCv16ateewbga35csyccbEi_liFHPpY,426
+junifer/_version.py,sha256=90ff6GY7_c87BOkjLC8yIcP5SrNVuB-0ZLklOIkeBBs,426
 junifer/stats.py,sha256=jN22_qFvWYBU9ZIMnCSzN4iOscWnWrcrUPIdLeDkV64,6163
 junifer/api/__init__.py,sha256=pSj8V8tmwOAQ3sshWJfRfB-n3z5bcJj3pHOBX4-8ONc,251
 junifer/api/cli.py,sha256=wtU7Rv9tDIT-4KQAkG6WxiE6mop3cuz6XxGDewceHPs,15329
@@ -54,7 +54,7 @@ junifer/configs/juseless/datagrabbers/tests/test_ukb_vbm.py,sha256=b9hjc1mgO--PS
 junifer/data/__init__.py,sha256=Z3CdIXpXK3Avxm2Qj7MsuNNZSM8Pc5KBa9D51DYd1v0,602
 junifer/data/coordinates.py,sha256=AovvAdPhl9oQoH4T24jhzW0UuNL8wRYtkYrYHhvtRC8,12381
 junifer/data/masks.py,sha256=x2vjMLRRGWt0fRGJ67_TjAdrrHZLE0VVnr3KizSbMnI,21427
-junifer/data/parcellations.py,sha256=reNi0YdxP0sQYnB_tnxabP73FkvkdXXGsDLn68-hnfM,65225
+junifer/data/parcellations.py,sha256=emjjttFE7v1TN_4YdeDdahuOOGiXapuFkfu8ur9TVNQ,65345
 junifer/data/template_spaces.py,sha256=2dD9GIBgsd764ol3ZvmHL11VrsaBC78CwrMaMh4TCGQ,5756
 junifer/data/utils.py,sha256=Jmbc7SLzy4nLP_zkWv_aJzb1MZ27tutJ98ifsECCamM,1295
 junifer/data/VOIs/meta/AutobiographicalMemory_VOIs.txt,sha256=9af38naeL18Tlt_gy_ep6vyTAxOB336JYjbo5FvP8PQ,686
@@ -126,7 +126,7 @@ junifer/markers/__init__.py,sha256=LjrBMZtWB0LKOnEwiFV-qsWzGUH2ka84VwS0h7wF45U,7
 junifer/markers/base.py,sha256=Af8TyoNAIHWREZkIgi2su6PUqoloJXVGT-KW13WlWUM,6370
 junifer/markers/collection.py,sha256=eD6_IJ3y-9lcN4r0ORZqgr2ICjHyTvlAKyh0HKPYqzk,5247
 junifer/markers/ets_rss.py,sha256=7fr6mmbMM5NKIDV6bUyyu-pwHJH56GwYv6oozK4EX6k,4557
-junifer/markers/parcel_aggregation.py,sha256=4dKBx2zgsFSuZlnSsr1tMWO_4kgh-NoId7epoiwTPfg,8702
+junifer/markers/parcel_aggregation.py,sha256=FECIPG7x8GXxbE2wNCqw6o1-630nlQxvm2YMkzb4HLs,8714
 junifer/markers/sphere_aggregation.py,sha256=3gC8-Z0qbX2y_q-YbwpnPll6lmKZY5V-DdQQA7tFzWc,8275
 junifer/markers/utils.py,sha256=b6Bt_isqsOD2OF7oHvEpHyilauxYZzyz8YcbGWq6J4A,3833
 junifer/markers/complexity/__init__.py,sha256=nzL6GpVlFhMDaWyJ-ZtpPx940LUSAUmYcyqLoQ7K1-E,818
@@ -248,10 +248,10 @@ junifer/utils/logging.py,sha256=furcU3XIUpUvnpe4PEwzWWIWgmH4j2ZA4MQdvSGWjj0,9216
 junifer/utils/tests/test_fs.py,sha256=WQS7cKlKEZ742CIuiOYYpueeAhY9PqlastfDVpVVtvE,923
 junifer/utils/tests/test_helpers.py,sha256=k5qqfxK8dFyuewTJyR1Qn6-nFaYNuVr0ysc18bfPjyU,929
 junifer/utils/tests/test_logging.py,sha256=l8oo-AiBV7H6_IzlsNcj__cLeZBUvgIGoaMszD9VaJg,7754
-junifer-0.0.5.dev48.dist-info/AUTHORS.rst,sha256=rmULKpchpSol4ExWFdm-qu4fkpSZPYqIESVJBZtGb6E,163
-junifer-0.0.5.dev48.dist-info/LICENSE.md,sha256=MqCnOBu8uXsEOzRZWh9EBVfVz-kE9NkXcLCrtGXo2yU,34354
-junifer-0.0.5.dev48.dist-info/METADATA,sha256=HcvOlaAOoZhs_ipslMx8_9IRDL4aDzQSLgIp4d0zx6o,8234
-junifer-0.0.5.dev48.dist-info/WHEEL,sha256=GJ7t_kWBFywbagK5eo9IoUwLW6oyOeTKmQ-9iHFVNxQ,92
-junifer-0.0.5.dev48.dist-info/entry_points.txt,sha256=DxFvKq0pOqRunAK0FxwJcoDfV1-dZvsFDpD5HRqSDhw,48
-junifer-0.0.5.dev48.dist-info/top_level.txt,sha256=4bAq1R2QFQ4b3hohjys2JBvxrl0GKk5LNFzYvz9VGcA,8
-junifer-0.0.5.dev48.dist-info/RECORD,,
+junifer-0.0.5.dev55.dist-info/AUTHORS.rst,sha256=rmULKpchpSol4ExWFdm-qu4fkpSZPYqIESVJBZtGb6E,163
+junifer-0.0.5.dev55.dist-info/LICENSE.md,sha256=MqCnOBu8uXsEOzRZWh9EBVfVz-kE9NkXcLCrtGXo2yU,34354
+junifer-0.0.5.dev55.dist-info/METADATA,sha256=9L2XcGUK0SiiPDME1gF1L4jmnSa7O5w6mP8oO9VasTA,8234
+junifer-0.0.5.dev55.dist-info/WHEEL,sha256=GJ7t_kWBFywbagK5eo9IoUwLW6oyOeTKmQ-9iHFVNxQ,92
+junifer-0.0.5.dev55.dist-info/entry_points.txt,sha256=DxFvKq0pOqRunAK0FxwJcoDfV1-dZvsFDpD5HRqSDhw,48
+junifer-0.0.5.dev55.dist-info/top_level.txt,sha256=4bAq1R2QFQ4b3hohjys2JBvxrl0GKk5LNFzYvz9VGcA,8
+junifer-0.0.5.dev55.dist-info/RECORD,,