junifer 0.0.5.dev27__py3-none-any.whl → 0.0.5.dev36__py3-none-any.whl

junifer/_version.py

@@ -12,5 +12,5 @@ __version__: str
 __version_tuple__: VERSION_TUPLE
 version_tuple: VERSION_TUPLE
 
-__version__ = version = '0.0.5.dev27'
-__version_tuple__ = version_tuple = (0, 0, 5, 'dev27')
+__version__ = version = '0.0.5.dev36'
+__version_tuple__ = version_tuple = (0, 0, 5, 'dev36')

junifer/api/__init__.py

@@ -1,4 +1,4 @@
-"""Provide imports for api sub-package."""
+"""Public API and CLI components."""
 
 # Authors: Federico Raimondo <f.raimondo@fz-juelich.de>
 #          Synchon Mandal <s.mandal@fz-juelich.de>

junifer/api/cli.py

@@ -8,7 +8,7 @@ import pathlib
 import subprocess
 import sys
 from pathlib import Path
-from typing import Dict, List, Tuple, Union
+from typing import Dict, List, Optional, Tuple, Union
 
 import click
 import pandas as pd
@@ -20,6 +20,7 @@ from ..utils.logging import (
     warn_with_log,
 )
 from .functions import collect as api_collect
+from .functions import list_elements as api_list_elements
 from .functions import queue as api_queue
 from .functions import reset as api_reset
 from .functions import run as api_run
@@ -451,6 +452,69 @@ def reset(
     api_reset(config)
 
 
+@cli.command()
+@click.argument(
+    "filepath",
+    type=click.Path(
+        exists=True, readable=True, dir_okay=False, path_type=pathlib.Path
+    ),
+)
+@click.option("--element", type=str, multiple=True)
+@click.option(
+    "-o",
+    "--output-file",
+    type=click.Path(dir_okay=False, writable=True, path_type=pathlib.Path),
+)
+@click.option(
+    "-v",
+    "--verbose",
+    type=click.UNPROCESSED,
+    callback=_validate_verbose,
+    default="info",
+)
+def list_elements(
+    filepath: click.Path,
+    element: Tuple[str],
+    output_file: Optional[click.Path],
+    verbose: Union[str, int],
+) -> None:
+    """Element listing command for CLI.
+
+    \f
+
+    Parameters
+    ----------
+    filepath : click.Path
+        The filepath to the configuration file.
+    element : tuple of str
+        The element to operate on.
+    output_file : click.Path or None
+        The path to write the output to. If not None, writing to
+        stdout is not performed.
+    verbose : click.Choice
+        The verbosity level: warning, info or debug (default "info").
+
+    """
+    configure_logging(level=verbose)
+    # Parse YAML
+    config = parse_yaml(filepath)  # type: ignore
+    # Fetch datagrabber
+    datagrabber = config["datagrabber"]
+    # Parse elements
+    elements = _parse_elements(element, config)
+    # Perform operation
+    listed_elements = api_list_elements(
+        datagrabber=datagrabber,
+        elements=elements,
+    )
+    # Check if output file is provided
+    if output_file is not None:
+        output_file.touch()
+        output_file.write_text(listed_elements)
+    else:
+        click.secho(listed_elements, fg="blue")
+
+
 @cli.group()
 def setup() -> None:  # pragma: no cover
     """Configure commands for Junifer."""

junifer/api/functions.py

@@ -361,3 +361,44 @@ def reset(config: Dict) -> None:
             shutil.rmtree(job_dir)
             # Remove directory
             job_dir.parent.rmdir()
+
+
+def list_elements(
+    datagrabber: Dict,
+    elements: Union[str, List[Union[str, Tuple]], Tuple, None] = None,
+) -> str:
+    """List elements of the datagrabber filtered using `elements`.
+
+    Parameters
+    ----------
+    datagrabber : dict
+        DataGrabber to index. Must have a key ``kind`` with the kind of
+        DataGrabber to use. All other keys are passed to the DataGrabber
+        constructor.
+    elements : str or tuple or list of str or tuple, optional
+        Element(s) to filter using. Will be used to index the DataGrabber
+        (default None).
+
+    """
+    # Get datagrabber to use
+    datagrabber_object = _get_datagrabber(datagrabber)
+
+    # Fetch elements
+    raw_elements_to_list = []
+    with datagrabber_object:
+        if elements is not None:
+            for element in datagrabber_object.filter(elements):
+                raw_elements_to_list.append(element)
+        else:
+            for element in datagrabber_object:
+                raw_elements_to_list.append(element)
+
+    elements_to_list = []
+    for element in raw_elements_to_list:
+        # Stringify elements if tuple for operation
+        str_element = (
+            ",".join(element) if isinstance(element, tuple) else element
+        )
+        elements_to_list.append(str_element)
+
+    return "\n".join(elements_to_list)

junifer/api/queue_context/__init__.py

@@ -1,4 +1,4 @@
-"""Provide imports for queue context sub-package."""
+"""Context adapters for queueing."""
 
 # Authors: Synchon Mandal <s.mandal@fz-juelich.de>
 # License: AGPL

junifer/api/tests/test_cli.py

@@ -14,6 +14,7 @@ from ruamel.yaml import YAML
 from junifer.api.cli import (
     _parse_elements_file,
     collect,
+    list_elements,
     queue,
     reset,
     run,
@@ -297,6 +298,88 @@ def test_reset(
         assert reset_result.exit_code == 0
 
 
+@pytest.mark.parametrize(
+    "elements",
+    [
+        ("sub-01", "sub-02"),
+        ("sub-03", "sub-04"),
+    ],
+)
+def test_list_elements_stdout(
+    elements: Tuple[str, ...],
+) -> None:
+    """Test elements listing to stdout.
+
+    Parameters
+    ----------
+    elements : tuple of str
+        The parametrized elements for filtering.
+
+    """
+    # Get test config
+    infile = Path(__file__).parent / "data" / "partly_cloudy_agg_mean_tian.yml"
+    # List elements command arguments
+    list_elements_args = [
+        str(infile.absolute()),
+        "--verbose",
+        "debug",
+        "--element",
+        elements[0],
+        "--element",
+        elements[1],
+    ]
+    # Invoke list elements command
+    list_elements_result = runner.invoke(list_elements, list_elements_args)
+    # Check
+    assert list_elements_result.exit_code == 0
+    assert f"{elements[0]}\n{elements[1]}" in list_elements_result.stdout
+
+
+@pytest.mark.parametrize(
+    "elements",
+    [
+        ("sub-01", "sub-02"),
+        ("sub-03", "sub-04"),
+    ],
+)
+def test_list_elements_output_file(
+    tmp_path: Path,
+    elements: Tuple[str, ...],
+) -> None:
+    """Test elements listing to output file.
+
+    Parameters
+    ----------
+    tmp_path : pathlib.Path
+        The path to the test directory.
+    elements : tuple of str
+        The parametrized elements for filtering.
+
+    """
+    # Get test config
+    infile = Path(__file__).parent / "data" / "partly_cloudy_agg_mean_tian.yml"
+    # Output file
+    output_file = tmp_path / "elements.txt"
+    # List elements command arguments
+    list_elements_args = [
+        str(infile.absolute()),
+        "--verbose",
+        "debug",
+        "--element",
+        elements[0],
+        "--element",
+        elements[1],
+        "--output-file",
+        str(output_file.resolve()),
+    ]
+    # Invoke list elements command
+    list_elements_result = runner.invoke(list_elements, list_elements_args)
+    # Check
+    assert list_elements_result.exit_code == 0
+    with open(output_file) as f:
+        assert f"{elements[0]}\n{elements[1]}" == f.read()
+
+
 def test_wtf_short() -> None:
     """Test short version of wtf command."""
     # Invoke wtf command

junifer/api/tests/test_functions.py

@@ -7,13 +7,13 @@
 
 import logging
 from pathlib import Path
-from typing import Dict, List, Tuple, Union
+from typing import Dict, List, Optional, Tuple, Union
 
 import pytest
 from ruamel.yaml import YAML
 
 import junifer.testing.registry  # noqa: F401
-from junifer.api.functions import collect, queue, reset, run
+from junifer.api.functions import collect, list_elements, queue, reset, run
 from junifer.datagrabber.base import BaseDataGrabber
 from junifer.pipeline.registry import build
 
@@ -637,3 +637,28 @@ def test_reset_queue(
 
         assert not Path(storage["uri"]).exists()
         assert not (tmp_path / "junifer_jobs" / job_name).exists()
+
+
+@pytest.mark.parametrize(
+    "elements",
+    [
+        ["sub-01"],
+        None,
+    ],
+)
+def test_list_elements(
+    datagrabber: Dict[str, str],
+    elements: Optional[List[str]],
+) -> None:
+    """Test elements listing.
+
+    Parameters
+    ----------
+    datagrabber : dict
+        Testing datagrabber as dictionary.
+    elements : str of list of str
+        The parametrized elements for filtering.
+
+    """
+    listed_elements = list_elements(datagrabber, elements)
+    assert "sub-01" in listed_elements

junifer/configs/__init__.py

@@ -1,4 +1,4 @@
-"""Provide imports for configs sub-package."""
+"""Custom components for specific platforms."""
 
 # Authors: Federico Raimondo <f.raimondo@fz-juelich.de>
 # License: AGPL

junifer/configs/juseless/__init__.py

@@ -1,4 +1,4 @@
-"""Provide imports for juseless sub-package."""
+"""Custom components for FZJ INM-7's beloved juseless."""
 
 # Authors: Federico Raimondo <f.raimondo@fz-juelich.de>
 # License: AGPL

junifer/configs/juseless/datagrabbers/__init__.py

@@ -1,4 +1,4 @@
-"""Provide imports for datagrabbers sub-package."""
+"""Custom DataGrabbers for FZJ INM-7's beloved juseless."""
 
 # Authors: Federico Raimondo <f.raimondo@fz-juelich.de>
 #          Leonard Sasse <l.sasse@fz-juelich.de>

junifer/data/__init__.py

@@ -1,4 +1,4 @@
-"""Provide imports for data sub-package."""
+"""Parcellations, coordinates and masks."""
 
 # Authors: Federico Raimondo <f.raimondo@fz-juelich.de>
 #          Synchon Mandal <s.mandal@fz-juelich.de>

junifer/data/coordinates.py

@@ -1,4 +1,4 @@
-"""Provide functions for list of coordinates."""
+"""Functions for coordinates manipulation."""
 
 # Authors: Federico Raimondo <f.raimondo@fz-juelich.de>
 #          Synchon Mandal <s.mandal@fz-juelich.de>

junifer/data/masks.py

@@ -1,4 +1,4 @@
-"""Provide functions for masks."""
+"""Functions for mask manipulation."""
 
 # Authors: Federico Raimondo <f.raimondo@fz-juelich.de>
 #          Synchon Mandal <s.mandal@fz-juelich.de>

junifer/data/parcellations.py

@@ -1,4 +1,4 @@
-"""Provide functions for parcellation."""
+"""Functions for parcellation manipulation."""
 
 # Authors: Federico Raimondo <f.raimondo@fz-juelich.de>
 #          Vera Komeyer <v.komeyer@fz-juelich.de>

junifer/data/template_spaces.py

@@ -1,4 +1,4 @@
-"""Provide functions for template spaces."""
+"""Functions for template space manipulation."""
 
 # Authors: Synchon Mandal <s.mandal@fz-juelich.de>
 # License: AGPL

junifer/datagrabber/__init__.py

@@ -1,4 +1,4 @@
-"""Provide imports for datagrabber sub-package."""
+"""DataGrabbers for datasets' data description."""
 
 # Authors: Federico Raimondo <f.raimondo@fz-juelich.de>
 #          Leonard Sasse <l.sasse@fz-juelich.de>

junifer/datareader/__init__.py

@@ -1,4 +1,4 @@
-"""Provide imports for datareader sub-package."""
+"""DataReaders for datasets' data loading."""
 
 # Authors: Federico Raimondo <f.raimondo@fz-juelich.de>
 #          Leonard Sasse <l.sasse@fz-juelich.de>

junifer/external/__init__.py

@@ -1,4 +1,4 @@
-"""Provide imports for external sub-package."""
+"""External tools adapted for junifer."""
 
 # Authors: Synchon Mandal <s.mandal@fz-juelich.de>
 # License: AGPL

junifer/external/nilearn/__init__.py

@@ -1,4 +1,4 @@
-"""Provide imports for custom nilearn objects sub-package."""
+"""Custom objects adapted from nilearn."""
 
 # Authors: Synchon Mandal <s.mandal@fz-juelich.de>
 # License: AGPL

junifer/markers/__init__.py

@@ -1,4 +1,4 @@
-"""Provide imports for markers sub-package."""
+"""Markers for feature extraction."""
 
 # Authors: Federico Raimondo <f.raimondo@fz-juelich.de>
 #          Leonard Sasse <l.sasse@fz-juelich.de>

junifer/onthefly/__init__.py

@@ -1,4 +1,4 @@
-"""Provide imports for onthefly sub-package."""
+"""Utilities for on-the-fly analyses."""
 
 # Authors: Synchon Mandal <s.mandal@fz-juelich.de>
 # License: AGPL

junifer/pipeline/__init__.py

@@ -1,4 +1,4 @@
-"""Provide imports for pipeline sub-package."""
+"""Pipeline components."""
 
 # Authors: Synchon Mandal <s.mandal@fz-juelich.de>
 # License: AGPL

junifer/preprocess/__init__.py

@@ -1,4 +1,4 @@
-"""Provide imports for preprocess sub-package."""
+"""Preprocessors for preprocessing data before feature extraction."""
 
 # Authors: Federico Raimondo <f.raimondo@fz-juelich.de>
 #          Leonard Sasse <l.sasse@fz-juelich.de>

junifer/stats.py

@@ -1,4 +1,4 @@
-"""Provide functions for statistics."""
+"""Statistical functions and helpers."""
 
 # Authors: Federico Raimondo <f.raimondo@fz-juelich.de>
 #          Synchon Mandal <s.mandal@fz-juelich.de>

junifer/storage/__init__.py

@@ -1,4 +1,4 @@
-"""Provide imports for storage sub-package."""
+"""Storages for storing extracted features."""
 
 # Authors: Federico Raimondo <f.raimondo@fz-juelich.de>
 #          Synchon Mandal <s.mandal@fz-juelich.de>

junifer/testing/__init__.py

@@ -1,4 +1,4 @@
-"""Provide imports for testing sub-package."""
+"""Testing components."""
 
 # Authors: Federico Raimondo <f.raimondo@fz-juelich.de>
 #          Synchon Mandal <s.mandal@fz-juelich.de>

junifer/testing/datagrabbers.py

@@ -1,4 +1,4 @@
-"""Provide testing DataGrabbers."""
+"""Testing DataGrabbers."""
 
 # Authors: Federico Raimondo <f.raimondo@fz-juelich.de>
 #          Synchon Mandal <s.mandal@fz-juelich.de>

junifer/utils/__init__.py

@@ -1,4 +1,4 @@
-"""Provide imports for utils sub-package."""
+"""General utilities and helpers."""
 
 # Authors: Federico Raimondo <f.raimondo@fz-juelich.de>
 #          Synchon Mandal <s.mandal@fz-juelich.de>

{junifer-0.0.5.dev27.dist-info → junifer-0.0.5.dev36.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: junifer
-Version: 0.0.5.dev27
+Version: 0.0.5.dev36
 Summary: JUelich NeuroImaging FEature extractoR
 Author-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Synchon Mandal <s.mandal@fz-juelich.de>
 Maintainer-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Synchon Mandal <s.mandal@fz-juelich.de>

{junifer-0.0.5.dev27.dist-info → junifer-0.0.5.dev36.dist-info}/RECORD

@@ -1,13 +1,13 @@
 junifer/__init__.py,sha256=x1UR2jUcrUdm2HNl-3Qvyi4UUrU6ms5qm2qcmNY7zZk,391
-junifer/_version.py,sha256=F2Z7xVB6hG84y0R3P4KaCGrxH_Hu1PR-l82F-5zd5fw,426
-junifer/stats.py,sha256=sU5IZ2qFZWbzgSutQS_z42miIVItpSGmQYBn6KkD5fA,6162
-junifer/api/__init__.py,sha256=YILu9M7SC0Ri4CVd90fELH2OnK_gvCYAXCoqBNCFE8E,257
-junifer/api/cli.py,sha256=_fC35jp0YzqNIpO5yvTb_5QBmUpw6sRFgVjBeoRbhO8,13627
+junifer/_version.py,sha256=mtiYNkxzw1J_5KKK0VZDDFERULfO3kg5_ZQlOd7_imI,426
+junifer/stats.py,sha256=jN22_qFvWYBU9ZIMnCSzN4iOscWnWrcrUPIdLeDkV64,6163
+junifer/api/__init__.py,sha256=pSj8V8tmwOAQ3sshWJfRfB-n3z5bcJj3pHOBX4-8ONc,251
+junifer/api/cli.py,sha256=wtU7Rv9tDIT-4KQAkG6WxiE6mop3cuz6XxGDewceHPs,15329
 junifer/api/decorators.py,sha256=8bnwHPAe7VgzKxl--M_e0umdAlTVSzaJQHEJZ5kof5k,2580
-junifer/api/functions.py,sha256=N59KM2GqxIwMU2tXc44oYCqogclgqD45qI_ULrfGYDQ,11616
+junifer/api/functions.py,sha256=29bGcpFueL3mjOcoNWU0xaHpM5aIrRQod-U2o-5_TSs,12938
 junifer/api/parser.py,sha256=a3SSC2xO-PF1pqXZXFq8Sh9aVd-dmHolJbCkGyOUTAM,4416
 junifer/api/utils.py,sha256=dyjTdPMwX9qeCrn8SQT2Pjshfnu-y1FEyujV7lCzvm0,3333
-junifer/api/queue_context/__init__.py,sha256=x0fT0ax-jPI0Fefg2quJ6VCIwhJ9rUQEjCNqxDXw7WM,287
+junifer/api/queue_context/__init__.py,sha256=_yXJ8woTxLNLoSR3yLxAW7MtC5sa-oCRxewsZ9D3j98,271
 junifer/api/queue_context/gnu_parallel_local_adapter.py,sha256=x2eQRVkhwJKd-Kx8AYia4F8nYnOLJrFzMGMjcwUygEc,9561
 junifer/api/queue_context/htcondor_adapter.py,sha256=92pt4M_r52inBVlQ2M8Di6quEKW4Xcq3qVNRXaV4rGY,13233
 junifer/api/queue_context/queue_context_adapter.py,sha256=a6UE8xavDfuaZbkWYsayVs6l-rwIrbpFSpqSyHsEeYY,1577
@@ -32,15 +32,15 @@ junifer/api/res/fsl/img2imgcoord,sha256=Zmaw3oJYrEltcXiPyEubXry9ppAq3SND52tdDWGg
 junifer/api/res/fsl/run_fsl_docker.sh,sha256=mRLtZo0OgDwleoee2MG6rYI37HVuGNk9zOADwcl97RA,1122
 junifer/api/res/fsl/std2imgcoord,sha256=-X5wRH6XMl0yqnTACJX6MFhO8DFOEWg42MHRxGvimXg,49
 junifer/api/tests/test_api_utils.py,sha256=zDRQiqFOaoO02FpzJCxEbZvsP4u4__Yr25e5k5MJwuI,2713
-junifer/api/tests/test_cli.py,sha256=FYGuTLlqjB9IifMIdvHEGSQSSy6ym6623fKKPs8PsM8,8871
-junifer/api/tests/test_functions.py,sha256=mvxdaGHxPje-aQGS2fo95xjU7jOf8TYaTWqwFZ5T0oY,17215
+junifer/api/tests/test_cli.py,sha256=kyDu-51lBmIBlQ2MnmmecC3nENrQuZRpk0bCkAPqmWM,10969
+junifer/api/tests/test_functions.py,sha256=unLxIMwB3f7HF3ESq0JCfRaQhNB9Xj0JEi1OMkWsgtQ,17753
 junifer/api/tests/test_parser.py,sha256=eUz2JPVb0_cxvoeI1O_C5PMNs5v_lDzGsN6fV1VW5Eg,6109
 junifer/api/tests/data/gmd_mean.yaml,sha256=Ohb_C5cfQMK-59U9O1ZhejXyBtzLc5Y4cv8QyYq2azg,330
 junifer/api/tests/data/gmd_mean_htcondor.yaml,sha256=f7NLv_KIJXTiPNFmOWl2Vw8EfwojhfkGtwbh5prbd6w,417
 junifer/api/tests/data/partly_cloudy_agg_mean_tian.yml,sha256=nS8K_R1hEuV71Vv-i9SYjnDGAK2FClQqBiE4kOuQ_ys,313
-junifer/configs/__init__.py,sha256=r6BU6vW7FVapSD81j24QeQiZe1oKspsJJRRPjXnCk00,120
-junifer/configs/juseless/__init__.py,sha256=Ws98DvlLEMHfwW6BjmvHQmqTlFRDps9r4pLAfNjfEiM,149
-junifer/configs/juseless/datagrabbers/__init__.py,sha256=tqCLmelWqB1xfElvknnaJ5oVRPp9XVXtZLzIpxYIghg,452
+junifer/configs/__init__.py,sha256=mE70B1Sc7Tn4uts1vMVF7Ie6hdj7PuDvmDmie3soA9I,121
+junifer/configs/juseless/__init__.py,sha256=mT1pnQcoH32bIqmU2mBO31pFsdc0jKrGBNVxxJ6fdao,159
+junifer/configs/juseless/datagrabbers/__init__.py,sha256=kLcoJyUZMrrAmgWynuTvute9tZ3sSVWrEm7t0nKCO4s,460
 junifer/configs/juseless/datagrabbers/aomic_id1000_vbm.py,sha256=4Vf1AC6WSDkCaYXKJXEkJHS2UsdON57wdhj_oqpK-vw,1428
 junifer/configs/juseless/datagrabbers/camcan_vbm.py,sha256=GXnDML55kKEGSb38olRUWL_AFdN9IvPViEGP9CaDTUQ,1497
 junifer/configs/juseless/datagrabbers/ixi_vbm.py,sha256=mCuv-27AsN9bReoq3Fo7CJaC2Jkmd5Y1sFEk5ExGqUo,2263
@@ -51,11 +51,11 @@ junifer/configs/juseless/datagrabbers/tests/test_camcan_vbm.py,sha256=o0dzptS97p
 junifer/configs/juseless/datagrabbers/tests/test_ixi_vbm.py,sha256=8jxpNZelXwpJGvA5LOfpso2X8yt1chvERAYmv76hS_g,1252
 junifer/configs/juseless/datagrabbers/tests/test_ucla.py,sha256=fFxllR0yvt7hiQYdSXJkl9_05UwemKfcp1vC6xf0X-U,3315
 junifer/configs/juseless/datagrabbers/tests/test_ukb_vbm.py,sha256=b9hjc1mgO--PSRC3id2EzzfE2yWNsuZ2UI47a6sfGZU,1025
-junifer/data/__init__.py,sha256=1E6JtzpnjjA0IutkJkarEik9NhCP9PPI6K0-37XDZVg,602
-junifer/data/coordinates.py,sha256=Y_-gGCvIqxjArGf-E6LmYzz6ZIbG0ugw5NjgIeirXuA,12850
-junifer/data/masks.py,sha256=u_DDKg8bv0Fec_DwEc1Ledajy5yen3VT-ZblQT6cwaI,23473
-junifer/data/parcellations.py,sha256=tWTrZE68K1X-_1kekRFhVmbrHX_lfSipjaPPjgy0etM,65220
-junifer/data/template_spaces.py,sha256=V_rsSeyXk1TtOtPuDeRtJxDfr0YU08ZB0JLgXNT3DIE,5752
+junifer/data/__init__.py,sha256=Z3CdIXpXK3Avxm2Qj7MsuNNZSM8Pc5KBa9D51DYd1v0,602
+junifer/data/coordinates.py,sha256=YzFUTeV9H8feWDlexz1v0E6UXERFeoP8ia1j5qYg8JU,12847
+junifer/data/masks.py,sha256=onSBFxar8l6TwNg3aUotSodv0-yabsWK8oF6qomcMxc,23477
+junifer/data/parcellations.py,sha256=reNi0YdxP0sQYnB_tnxabP73FkvkdXXGsDLn68-hnfM,65225
+junifer/data/template_spaces.py,sha256=2dD9GIBgsd764ol3ZvmHL11VrsaBC78CwrMaMh4TCGQ,5756
 junifer/data/utils.py,sha256=Jmbc7SLzy4nLP_zkWv_aJzb1MZ27tutJ98ifsECCamM,1295
 junifer/data/VOIs/meta/AutobiographicalMemory_VOIs.txt,sha256=9af38naeL18Tlt_gy_ep6vyTAxOB336JYjbo5FvP8PQ,686
 junifer/data/VOIs/meta/CogAC_VOIs.txt,sha256=Sr5_E712OLdeQRyUcDNM0wLBvZIyO6gc9Q7KkyJHX1A,398
@@ -84,7 +84,7 @@ junifer/data/tests/test_data_utils.py,sha256=_DaiC8K79gs9HFHxr-udNeE2YTM6JA0-1i-
 junifer/data/tests/test_masks.py,sha256=hJAvwPElhzvHYN15-6n98ABgCD-3lBY5WwHFuhImRe0,16172
 junifer/data/tests/test_parcellations.py,sha256=ZEU1VHIK0AyxpclcJhG_0rQU0phaBU_dHP7Erfi3mN8,38222
 junifer/data/tests/test_template_spaces.py,sha256=PJulN7xHpAcSOTY-UzTG_WPywZEBSlAZGiNG4gzk1_8,3144
-junifer/datagrabber/__init__.py,sha256=pZHJIY8nAlbVngsyRScE6a6GKbytiwjJB7SdJNqIbl4,680
+junifer/datagrabber/__init__.py,sha256=fhHKsZyBeqCFJJMr53VF6EUkNrFuUZkNR8QZbaoHTNg,680
 junifer/datagrabber/base.py,sha256=KgMSKfkwd4yLW4PhoJDoWMgcDkGmDoIs6jkgKyOJd9A,6303
 junifer/datagrabber/datalad_base.py,sha256=SsGUJdefdDgAJARBG5kHcbLK2CvvnoEto0TpGZUgnWE,10659
 junifer/datagrabber/dmcc13_benchmark.py,sha256=K7-TnVRCDQwL6IIaFofJABKr2Jho0loewAavzdmBjK0,12869
@@ -110,19 +110,19 @@ junifer/datagrabber/tests/test_dmcc13_benchmark.py,sha256=m1_ODoGAvSiFeGS-tyTaK1
 junifer/datagrabber/tests/test_multiple.py,sha256=Mx3xfDrQiWG2W5MW24P5L2XiSeALpJ2-jFlzWkKtu9w,5659
 junifer/datagrabber/tests/test_pattern.py,sha256=Zmwg79f-qs6AEPVoFpooOquK7rm1hsmgkzuo11BG5PE,8019
 junifer/datagrabber/tests/test_pattern_datalad.py,sha256=hxw_aXBwHjUo-aUrHescBA2dn1bSJxh-0oV8495iIEA,6483
-junifer/datareader/__init__.py,sha256=WWoiIz6y0EdExWO3WCGiERNw3Y3WUsXyHaWnHilP2kE,263
+junifer/datareader/__init__.py,sha256=_vtrLX_vxlHFD90gPa3gWnhTuvfWM7Uzyj6y8ZPaWm8,259
 junifer/datareader/default.py,sha256=BFtk_HJueia7EfhaIpgebe-RWHSKaLEO5btpHA--wo0,4848
 junifer/datareader/tests/test_default_reader.py,sha256=9dPZSkba1YQjFsA0XwdUbx5sq8DVIEZoy_WfMAcvRus,5220
-junifer/external/__init__.py,sha256=58gL7gNN_PI1GyN6r9CO035TzvJdi8S-zFg5reDt4Xc,116
+junifer/external/__init__.py,sha256=CBB7eQul2hf-WWwT_PYFV1MS9KkXlZBO7oQWWVLgB_I,110
 junifer/external/h5io/h5io/__init__.py,sha256=LG7ru_Rt3EOE2H4PGYfBhC12Iax3yeTquZkd8TICiKk,469
 junifer/external/h5io/h5io/_h5io.py,sha256=8dWZDYegoPcBkH_fHPdl0eXNWTaRdk9hfIQo8Mcegzo,28748
 junifer/external/h5io/h5io/_version.py,sha256=mFY0GwwuN-a3M8w93_mskS6GZIvv9SNdjLfJaWNsm-I,22
 junifer/external/h5io/h5io/chunked_array.py,sha256=K1HWf7R2Jc7gCzBqAoBjx0ZnMmUhTe3iAO6RF6PdUO4,3338
 junifer/external/h5io/h5io/chunked_list.py,sha256=1Y5BbuWzurJlEFQzJNuDdC3fNZ39ENEMba99X_4VeSM,1952
-junifer/external/nilearn/__init__.py,sha256=QkT7Z2n6L7_qyN0o69Z-mYuyLre0SF884PSBTnG_ltQ,199
+junifer/external/nilearn/__init__.py,sha256=a2Umwm3_WeqIC7DqPUmnUonYfX3LUdQ0ScDGZrNP6y4,180
 junifer/external/nilearn/junifer_nifti_spheres_masker.py,sha256=sA8fbdaTHk2omYidApNO1hN0ObwDJR_h26P9i3MhbvM,16274
 junifer/external/nilearn/tests/test_junifer_nifti_spheres_masker.py,sha256=qlMFWjo9y8mNLrdmN2qCEK6_nplASv2OlomSfTxDcuw,10370
-junifer/markers/__init__.py,sha256=exUUmpDsPkoNa9FK6Y7pDusOYv56_zoci8hiOaxyswE,778
+junifer/markers/__init__.py,sha256=LjrBMZtWB0LKOnEwiFV-qsWzGUH2ka84VwS0h7wF45U,769
 junifer/markers/base.py,sha256=Af8TyoNAIHWREZkIgi2su6PUqoloJXVGT-KW13WlWUM,6370
 junifer/markers/collection.py,sha256=eD6_IJ3y-9lcN4r0ORZqgr2ICjHyTvlAKyh0HKPYqzk,5247
 junifer/markers/ets_rss.py,sha256=7fr6mmbMM5NKIDV6bUyyu-pwHJH56GwYv6oozK4EX6k,4557
@@ -188,10 +188,10 @@ junifer/markers/tests/test_marker_utils.py,sha256=SR3ADWI3uGv4ozYqVu-rMZnJVqP6Jn
 junifer/markers/tests/test_markers_base.py,sha256=cbuCeMmjyFMP1ea6J6XRsBQo8CivQ41ooABiT1Snj2k,3076
 junifer/markers/tests/test_parcel_aggregation.py,sha256=N0Nn42BF1apQkhntZikiU73b5clJkY2LThBv2YScJPg,26531
 junifer/markers/tests/test_sphere_aggregation.py,sha256=Xu2vrZvaK0oCZqjuJGiC6Tl8jSOFwVl75U4geclpy14,9747
-junifer/onthefly/__init__.py,sha256=GG_Z5NgnVNph6CLPtGFI2HE_OIuVTZ874BOq72mA-ps,160
+junifer/onthefly/__init__.py,sha256=hXPczDl10JzCuKe6MNhigXIdFwvftEaRY5fXqCuaRJM,153
 junifer/onthefly/read_transform.py,sha256=8ia2QktWpVhPDD20bKywuVHPU1Ys2Wyc_HvKyyRTcVo,4309
 junifer/onthefly/tests/test_read_transform.py,sha256=D2C3IpXQHdsJSF07v8rEwGntLGXjZOserlRhebJUAVM,4719
-junifer/pipeline/__init__.py,sha256=yV9vFzwb1OYwC5apEGzDVpjEGCZxfEOmx5FoEha9xY4,282
+junifer/pipeline/__init__.py,sha256=oTnyotkwfw6K7s7t8c0U8Ew3trx4wnkXlK4xw_h8PHY,261
 junifer/pipeline/pipeline_step_mixin.py,sha256=kU0Wut_chlT-iTUb8NP72c7YEoHAECbp7AC0vVsMejc,7219
 junifer/pipeline/registry.py,sha256=12tRsFeDz_kj9D1nzy9SAkBpchu5IyRH7U2h7eqPDZA,4260
 junifer/pipeline/singleton.py,sha256=-BiiyFiEO1EItztBcAWI_eyApR-oJTAGVRXkV706rQ4,985
@@ -202,7 +202,7 @@ junifer/pipeline/tests/test_pipeline_step_mixin.py,sha256=_ykZzyNzREXy-r_yv1gY_j
 junifer/pipeline/tests/test_registry.py,sha256=rYN0pO3gSueQ6XsasEM9VU5BkLyaNl8WaCZiaO8Rno0,4105
 junifer/pipeline/tests/test_update_meta_mixin.py,sha256=UeWwpUi-Q5WVd36Fgfn_utXplSVXMSjLcdO2mR2xLTk,1355
 junifer/pipeline/tests/test_workdir_manager.py,sha256=E1WY4C-GDsx2c49sePqr1WR_Y3nZ1kiRn4Veu506uTs,2801
-junifer/preprocess/__init__.py,sha256=QFDpEl6SnbWUhTXxZExpbIPNVSzxx5ynb2Y5BS0XGko,408
+junifer/preprocess/__init__.py,sha256=lWxDgXD_Ms7FPz70JUcUJT5AbEs-v65K2xrdh3d-a80,428
 junifer/preprocess/base.py,sha256=Bn1VdonQ1f_DDPwFMpdaeyfLfNSnROulr-U8HuGQ81A,6697
 junifer/preprocess/bold_warper.py,sha256=pEQ1GaWTV2Ili9WyqJgtq0PGHm4hNztXyY9ixoLNZnw,9060
 junifer/preprocess/ants/__init__.py,sha256=Uobmbhh6_gOowkF2hQNSQOh3AYeaXzarBXEcLJzhERE,112
@@ -227,7 +227,7 @@ junifer/preprocess/warping/_ants_warper.py,sha256=Y1UzZ5jy1TvlLEkaQKW7jCNvEHufZM
 junifer/preprocess/warping/_fsl_warper.py,sha256=eELmS44LYYANQaWR3VDKv8iwpEC2qnF9kbTYRanR2mE,3204
 junifer/preprocess/warping/space_warper.py,sha256=BW7ymZdr4h7lJRtPLi3RT7qwgmu-HFJFqzZNUl341YU,6589
 junifer/preprocess/warping/tests/test_space_warper.py,sha256=hHF97XUrMeAu8pIPBUrqD77PijbSv5_dAj9-Zte7UZM,5622
-junifer/storage/__init__.py,sha256=QlzBw9UrRhmg_f7zQVas9h313u3sfZIBicA3_0Skm4M,337
+junifer/storage/__init__.py,sha256=5ve0Vy1stGmn9iQv0c4w-76-sg-gFqZE2IlRlJhFWpQ,337
 junifer/storage/base.py,sha256=UxDvj81gSmqqHspbSs1X_i9HvW5wXysDippI7HWM7aM,9654
 junifer/storage/hdf5.py,sha256=oxdPuCG0hxzSDNH0uHnYFwVr_wp0g9yvgZf8bv3PkJM,35631
 junifer/storage/pandas_base.py,sha256=Qu3Az-xEaFftsiZwordONnOF2UBO1JgkrP8tmxhXUN4,7473
@@ -238,8 +238,8 @@ junifer/storage/tests/test_pandas_base.py,sha256=y_TfUGpuXkj_39yVon3rMDxMeBrZXs5
 junifer/storage/tests/test_sqlite.py,sha256=JPfE6r34o86XkKaB6yjMVmO_2vUV40DjsaHICagUtjk,28318
 junifer/storage/tests/test_storage_base.py,sha256=YzgfspuggzXejyPIoRCPST3ZzH9Pi7dgl0IHN7kynXM,3071
 junifer/storage/tests/test_utils.py,sha256=vRGhbeOsSn2Izhjh5AaaJkp6X2EoIQVH3a-9COFVnzg,11854
-junifer/testing/__init__.py,sha256=5rCgJOF9m2du2u4Qsaze9SZ1oDjKptn6-QbN7VPhD1I,235
-junifer/testing/datagrabbers.py,sha256=4E368euqkZtSkNyf8Q45GTittMYGzev3mIwngCcAiMY,6496
+junifer/testing/__init__.py,sha256=LYkax9qpZlxcZnMpZLlvnPSmUr_JoF_CjO3gugvj1Co,214
+junifer/testing/datagrabbers.py,sha256=tY_dObc2wqSmIrQhcfwR_c8AuVYch51XuhpCKcfA_Oc,6488
 junifer/testing/registry.py,sha256=iGH3hAt36VtvnZO7UQjybHGh2FI8vo1InY3uDSct5Ps,720
 junifer/testing/utils.py,sha256=Qgf1ZPk-V1jU2g82a7K0P43VAxbTjOnnBfdV-9wDuMo,558
 junifer/testing/data/sub-0001_task-anticipation_acq-seq_desc-confounds_regressors.tsv,sha256=iDY1apF5caxnyGqvBYWer5JRKQIfuOwoT-SzzsgL59s,406849
@@ -249,17 +249,17 @@ junifer/testing/tests/test_spmauditory_datagrabber.py,sha256=1G1emk-Ze59HiNLaYsy
 junifer/testing/tests/test_testing_registry.py,sha256=oerticBaPRaRZm3yANzInLac0Mqph3Y0aZPQFayu7xA,827
 junifer/tests/test_main.py,sha256=GMff7jlisGM9_FsiUwWDte43j-KQJGFRYZpwRRqTkd8,373
 junifer/tests/test_stats.py,sha256=3vPMgYYpWxk8ECDFOMm3-dFBlh4XxjL83SwRBSBAHok,4155
-junifer/utils/__init__.py,sha256=sFpsDKbPPtoU3Db3OSO9Vo45u4yE7UfocNaBtD-qvdk,310
+junifer/utils/__init__.py,sha256=pnx76oY_PbQzuN7DKRZ2c7K81XDOm8tOvB46wMfhZW8,302
 junifer/utils/fs.py,sha256=Jd9AoV2fIF7pT7KhXsn8T1O1fJ1_SFZgaFuOBAM7DG8,460
 junifer/utils/helpers.py,sha256=Hp3yGZa9x659BCqFTd4keEU1gbHXNAbJ1_lHG1M6lwI,1338
 junifer/utils/logging.py,sha256=furcU3XIUpUvnpe4PEwzWWIWgmH4j2ZA4MQdvSGWjj0,9216
 junifer/utils/tests/test_fs.py,sha256=WQS7cKlKEZ742CIuiOYYpueeAhY9PqlastfDVpVVtvE,923
 junifer/utils/tests/test_helpers.py,sha256=k5qqfxK8dFyuewTJyR1Qn6-nFaYNuVr0ysc18bfPjyU,929
 junifer/utils/tests/test_logging.py,sha256=l8oo-AiBV7H6_IzlsNcj__cLeZBUvgIGoaMszD9VaJg,7754
-junifer-0.0.5.dev27.dist-info/AUTHORS.rst,sha256=rmULKpchpSol4ExWFdm-qu4fkpSZPYqIESVJBZtGb6E,163
-junifer-0.0.5.dev27.dist-info/LICENSE.md,sha256=MqCnOBu8uXsEOzRZWh9EBVfVz-kE9NkXcLCrtGXo2yU,34354
-junifer-0.0.5.dev27.dist-info/METADATA,sha256=jvrOkuBla5IlTKRbbmZz3d9Pxe8cPSEo60ZO30t3N9E,8234
-junifer-0.0.5.dev27.dist-info/WHEEL,sha256=GJ7t_kWBFywbagK5eo9IoUwLW6oyOeTKmQ-9iHFVNxQ,92
-junifer-0.0.5.dev27.dist-info/entry_points.txt,sha256=DxFvKq0pOqRunAK0FxwJcoDfV1-dZvsFDpD5HRqSDhw,48
-junifer-0.0.5.dev27.dist-info/top_level.txt,sha256=4bAq1R2QFQ4b3hohjys2JBvxrl0GKk5LNFzYvz9VGcA,8
-junifer-0.0.5.dev27.dist-info/RECORD,,
+junifer-0.0.5.dev36.dist-info/AUTHORS.rst,sha256=rmULKpchpSol4ExWFdm-qu4fkpSZPYqIESVJBZtGb6E,163
+junifer-0.0.5.dev36.dist-info/LICENSE.md,sha256=MqCnOBu8uXsEOzRZWh9EBVfVz-kE9NkXcLCrtGXo2yU,34354
+junifer-0.0.5.dev36.dist-info/METADATA,sha256=5OmMaGrG1dIzsg8i7OHCyLkntZ0QeeKLmhtzCFZIRBo,8234
+junifer-0.0.5.dev36.dist-info/WHEEL,sha256=GJ7t_kWBFywbagK5eo9IoUwLW6oyOeTKmQ-9iHFVNxQ,92
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+junifer-0.0.5.dev36.dist-info/RECORD,,