junifer 0.0.5.dev242__py3-none-any.whl → 0.0.6.dev6__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- junifer/_version.py +2 -2
- junifer/markers/brainprint.py +1 -1
- junifer/utils/helpers.py +3 -2
- {junifer-0.0.5.dev242.dist-info → junifer-0.0.6.dev6.dist-info}/METADATA +1 -1
- {junifer-0.0.5.dev242.dist-info → junifer-0.0.6.dev6.dist-info}/RECORD +10 -10
- {junifer-0.0.5.dev242.dist-info → junifer-0.0.6.dev6.dist-info}/WHEEL +1 -1
- {junifer-0.0.5.dev242.dist-info → junifer-0.0.6.dev6.dist-info}/AUTHORS.rst +0 -0
- {junifer-0.0.5.dev242.dist-info → junifer-0.0.6.dev6.dist-info}/LICENSE.md +0 -0
- {junifer-0.0.5.dev242.dist-info → junifer-0.0.6.dev6.dist-info}/entry_points.txt +0 -0
- {junifer-0.0.5.dev242.dist-info → junifer-0.0.6.dev6.dist-info}/top_level.txt +0 -0
junifer/_version.py
CHANGED
@@ -12,5 +12,5 @@ __version__: str
|
|
12
12
|
__version_tuple__: VERSION_TUPLE
|
13
13
|
version_tuple: VERSION_TUPLE
|
14
14
|
|
15
|
-
__version__ = version = '0.0.
|
16
|
-
__version_tuple__ = version_tuple = (0, 0,
|
15
|
+
__version__ = version = '0.0.6.dev6'
|
16
|
+
__version_tuple__ = version_tuple = (0, 0, 6, 'dev6')
|
junifer/markers/brainprint.py
CHANGED
@@ -143,7 +143,7 @@ class BrainPrint(BaseMarker):
|
|
143
143
|
mri_binarize_cmd = [
|
144
144
|
"mri_binarize",
|
145
145
|
f"--i {aseg_path.resolve()}",
|
146
|
-
f"--match {''.join(indices)}",
|
146
|
+
f"--match {' '.join(indices)}",
|
147
147
|
f"--o {mri_binarize_output_path.resolve()}",
|
148
148
|
]
|
149
149
|
# Call mri_binarize command
|
junifer/utils/helpers.py
CHANGED
@@ -5,6 +5,7 @@
|
|
5
5
|
|
6
6
|
import collections.abc
|
7
7
|
import subprocess
|
8
|
+
import sys
|
8
9
|
from typing import Dict, List
|
9
10
|
|
10
11
|
from .logging import logger, raise_error
|
@@ -45,13 +46,13 @@ def run_ext_cmd(name: str, cmd: List[str]) -> None:
|
|
45
46
|
if process.returncode == 0:
|
46
47
|
logger.info(
|
47
48
|
f"{name} command succeeded with the following output:\n"
|
48
|
-
f"{process.stdout}"
|
49
|
+
f"{process.stdout.decode(sys.stdout.encoding)}"
|
49
50
|
)
|
50
51
|
else:
|
51
52
|
raise_error(
|
52
53
|
msg=(
|
53
54
|
f"{name} command failed with the following error:\n"
|
54
|
-
f"{process.stdout}"
|
55
|
+
f"{process.stdout.decode(sys.stdout.encoding)}"
|
55
56
|
),
|
56
57
|
klass=RuntimeError,
|
57
58
|
)
|
@@ -1,6 +1,6 @@
|
|
1
1
|
Metadata-Version: 2.1
|
2
2
|
Name: junifer
|
3
|
-
Version: 0.0.
|
3
|
+
Version: 0.0.6.dev6
|
4
4
|
Summary: JUelich NeuroImaging FEature extractoR
|
5
5
|
Author-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Synchon Mandal <s.mandal@fz-juelich.de>
|
6
6
|
Maintainer-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Synchon Mandal <s.mandal@fz-juelich.de>
|
@@ -1,5 +1,5 @@
|
|
1
1
|
junifer/__init__.py,sha256=-T9XmiCCL0j3YLx-0Pph15sPfL5FlcBDscajjJ-V4sU,604
|
2
|
-
junifer/_version.py,sha256=
|
2
|
+
junifer/_version.py,sha256=nVn_509eHiH2KjeZJLZwflBXCcWgR8aVl2f9Ym1ItyM,424
|
3
3
|
junifer/stats.py,sha256=BjQb2lfTGDP9l4UuQYmJFcJJNRfbJDGlNvC06SJaDDE,6237
|
4
4
|
junifer/api/__init__.py,sha256=lwyIF0hPc7fICuSoddJfay0LPqlTRxHJ_xbtizgFYZA,312
|
5
5
|
junifer/api/cli.py,sha256=53pews3mXkJ7DUDSkV51PbitYnuVAdQRkWG-gjO08Uw,16142
|
@@ -140,7 +140,7 @@ junifer/external/nilearn/tests/test_junifer_connectivity_measure.py,sha256=cwm-R
|
|
140
140
|
junifer/external/nilearn/tests/test_junifer_nifti_spheres_masker.py,sha256=zpvBYIvaNjUj9fIUg5K78LRzJqbyMYlUo2UQYS9_lo4,12275
|
141
141
|
junifer/markers/__init__.py,sha256=u4BFgS_3GXAwFN2HfqdAhlBkyenLw4IYlMlwXwnjkVQ,1235
|
142
142
|
junifer/markers/base.py,sha256=__Z0owDdjTwb7alQneOeoaUqaeCVbHwFRnaRZERi37M,8364
|
143
|
-
junifer/markers/brainprint.py,sha256=
|
143
|
+
junifer/markers/brainprint.py,sha256=WqK78RVaFX1e0AcwpkNzCUEZWRSMgoMCX1-wNOXDhmk,15116
|
144
144
|
junifer/markers/collection.py,sha256=13nccLKJp2nMs07hLpvcSYlvfj_L1fntmFrYeAE2jLM,5544
|
145
145
|
junifer/markers/ets_rss.py,sha256=4b1rUIMt4RISNSMQqATJadYheyT-YOnadWZDwGsFELk,4273
|
146
146
|
junifer/markers/parcel_aggregation.py,sha256=WKS_GILu80JF6IMK0BsHLvq7NefqlHt6u37b2lOx7_Q,8349
|
@@ -261,15 +261,15 @@ junifer/tests/test_main.py,sha256=GMff7jlisGM9_FsiUwWDte43j-KQJGFRYZpwRRqTkd8,37
|
|
261
261
|
junifer/tests/test_stats.py,sha256=3vPMgYYpWxk8ECDFOMm3-dFBlh4XxjL83SwRBSBAHok,4155
|
262
262
|
junifer/utils/__init__.py,sha256=F_I7WXtZMrBGGNLN09LvzBRwWKopL2k1z0UgCZvpwj0,471
|
263
263
|
junifer/utils/fs.py,sha256=M3CKBLh4gPS6s9giyopgb1hHMXzLb6k3cung2wHVBjs,492
|
264
|
-
junifer/utils/helpers.py,sha256=
|
264
|
+
junifer/utils/helpers.py,sha256=_IqnaPaOcFy1yrEyNmmg7XqQWb1wHOtxfOBnlaRYbiI,2063
|
265
265
|
junifer/utils/logging.py,sha256=ardaiJkDfZMYvak5UIL5Etxg5Ii7inmVQSBdFLdgtb8,9781
|
266
266
|
junifer/utils/tests/test_fs.py,sha256=WQS7cKlKEZ742CIuiOYYpueeAhY9PqlastfDVpVVtvE,923
|
267
267
|
junifer/utils/tests/test_helpers.py,sha256=k5qqfxK8dFyuewTJyR1Qn6-nFaYNuVr0ysc18bfPjyU,929
|
268
268
|
junifer/utils/tests/test_logging.py,sha256=duO4ou365hxwa_kwihFtKPLaL6LC5XHiyhOijrrngbA,8009
|
269
|
-
junifer-0.0.
|
270
|
-
junifer-0.0.
|
271
|
-
junifer-0.0.
|
272
|
-
junifer-0.0.
|
273
|
-
junifer-0.0.
|
274
|
-
junifer-0.0.
|
275
|
-
junifer-0.0.
|
269
|
+
junifer-0.0.6.dev6.dist-info/AUTHORS.rst,sha256=rmULKpchpSol4ExWFdm-qu4fkpSZPYqIESVJBZtGb6E,163
|
270
|
+
junifer-0.0.6.dev6.dist-info/LICENSE.md,sha256=MqCnOBu8uXsEOzRZWh9EBVfVz-kE9NkXcLCrtGXo2yU,34354
|
271
|
+
junifer-0.0.6.dev6.dist-info/METADATA,sha256=xiXPBGQgwXibZ7Lv-Jh8gMDr17N_ExAeOOHaDUG-KPE,8278
|
272
|
+
junifer-0.0.6.dev6.dist-info/WHEEL,sha256=R0nc6qTxuoLk7ShA2_Y-UWkN8ZdfDBG2B6Eqpz2WXbs,91
|
273
|
+
junifer-0.0.6.dev6.dist-info/entry_points.txt,sha256=DxFvKq0pOqRunAK0FxwJcoDfV1-dZvsFDpD5HRqSDhw,48
|
274
|
+
junifer-0.0.6.dev6.dist-info/top_level.txt,sha256=4bAq1R2QFQ4b3hohjys2JBvxrl0GKk5LNFzYvz9VGcA,8
|
275
|
+
junifer-0.0.6.dev6.dist-info/RECORD,,
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|