junifer 0.0.5.dev208__py3-none-any.whl → 0.0.5.dev240__py3-none-any.whl

junifer/markers/functional_connectivity/tests/test_edge_functional_connectivity_spheres.py

@@ -5,6 +5,9 @@
 # License: AGPL
 
 from pathlib import Path
+from typing import Dict
+
+import pytest
 
 from junifer.datareader import DefaultDataReader
 from junifer.markers.functional_connectivity import EdgeCentricFCSpheres
@@ -12,19 +15,36 @@ from junifer.storage import SQLiteFeatureStorage
 from junifer.testing.datagrabbers import SPMAuditoryTestingDataGrabber
 
 
-def test_EdgeCentricFCSpheres(tmp_path: Path) -> None:
+@pytest.mark.parametrize(
+    "conn_method_params",
+    [
+        {"empirical": False},
+        {"empirical": True},
+    ],
+)
+def test_EdgeCentricFCSpheres(
+    tmp_path: Path,
+    conn_method_params: Dict[str, bool],
+) -> None:
     """Test EdgeCentricFCSpheres.
 
     Parameters
     ----------
     tmp_path : pathlib.Path
         The path to the test directory.
+    conn_method_params : dict
+        The parametrized parameters to connectivity measure method.
 
     """
     with SPMAuditoryTestingDataGrabber() as dg:
+        # Get element data
         element_data = DefaultDataReader().fit_transform(dg["sub001"])
+        # Setup marker
         marker = EdgeCentricFCSpheres(
-            coords="DMNBuckner", radius=5.0, cor_method="correlation"
+            coords="DMNBuckner",
+            radius=5.0,
+            conn_method="correlation",
+            conn_method_params=conn_method_params,
         )
         # Check correct output
         assert "matrix" == marker.get_output_type(
@@ -45,13 +65,6 @@ def test_EdgeCentricFCSpheres(tmp_path: Path) -> None:
         assert len(set(edge_fc_bold["row_names"])) == n_edges
         assert len(set(edge_fc_bold["col_names"])) == n_edges
 
-        # Check empirical correlation method parameters
-        marker = EdgeCentricFCSpheres(
-            coords="DMNBuckner",
-            radius=5.0,
-            cor_method="correlation",
-            cor_method_params={"empirical": True},
-        )
         # Store
         storage = SQLiteFeatureStorage(
             uri=tmp_path / "test_edge_fc_spheres.sqlite", upsert="ignore"

junifer/markers/functional_connectivity/tests/test_functional_connectivity_parcels.py

@@ -6,10 +6,13 @@
 # License: AGPL
 
 from pathlib import Path
+from typing import TYPE_CHECKING, Dict, Type
 
+import pytest
 from nilearn.connectome import ConnectivityMeasure
 from nilearn.maskers import NiftiLabelsMasker
 from numpy.testing import assert_array_almost_equal
+from sklearn.covariance import EmpiricalCovariance, LedoitWolf
 
 from junifer.data import get_parcellation
 from junifer.datareader import DefaultDataReader
@@ -20,19 +23,42 @@ from junifer.storage import SQLiteFeatureStorage
 from junifer.testing.datagrabbers import PartlyCloudyTestingDataGrabber
 
 
-def test_FunctionalConnectivityParcels(tmp_path: Path) -> None:
+if TYPE_CHECKING:
+    from sklearn.base import BaseEstimator
+
+
+@pytest.mark.parametrize(
+    "conn_method_params, cov_estimator",
+    [
+        ({"empirical": False}, LedoitWolf(store_precision=False)),
+        ({"empirical": True}, EmpiricalCovariance(store_precision=False)),
+    ],
+)
+def test_FunctionalConnectivityParcels(
+    tmp_path: Path,
+    conn_method_params: Dict[str, bool],
+    cov_estimator: Type["BaseEstimator"],
+) -> None:
     """Test FunctionalConnectivityParcels.
 
     Parameters
     ----------
     tmp_path : pathlib.Path
         The path to the test directory.
+    conn_method_params : dict
+        The parametrized parameters to connectivity measure method.
+    cov_estimator : estimator object
+        The parametrized covariance estimator.
 
     """
     with PartlyCloudyTestingDataGrabber() as dg:
+        # Get element data
         element_data = DefaultDataReader().fit_transform(dg["sub-01"])
+        # Setup marker
         marker = FunctionalConnectivityParcels(
-            parcellation="TianxS1x3TxMNInonlinear2009cAsym"
+            parcellation="TianxS1x3TxMNInonlinear2009cAsym",
+            conn_method="correlation",
+            conn_method_params=conn_method_params,
         )
         # Check correct output
         assert "matrix" == marker.get_output_type(
@@ -65,7 +91,7 @@ def test_FunctionalConnectivityParcels(tmp_path: Path) -> None:
         )
         # Compute the connectivity measure
         connectivity_measure = ConnectivityMeasure(
-            kind="covariance"
+            cov_estimator=cov_estimator, kind="correlation"  # type: ignore
         ).fit_transform([extracted_timeseries])[0]
 
         # Check that FC are almost equal
@@ -73,11 +99,6 @@ def test_FunctionalConnectivityParcels(tmp_path: Path) -> None:
             connectivity_measure, fc_bold["data"], decimal=3
         )
 
-        # Check empirical correlation method parameters
-        marker = FunctionalConnectivityParcels(
-            parcellation="TianxS1x3TxMNInonlinear2009cAsym",
-            cor_method_params={"empirical": True},
-        )
         # Store
         storage = SQLiteFeatureStorage(
             uri=tmp_path / "test_fc_parcels.sqlite", upsert="ignore"

junifer/markers/functional_connectivity/tests/test_functional_connectivity_spheres.py

@@ -7,12 +7,13 @@
 # License: AGPL
 
 from pathlib import Path
+from typing import TYPE_CHECKING, Dict, Type
 
 import pytest
 from nilearn.connectome import ConnectivityMeasure
 from nilearn.maskers import NiftiSpheresMasker
 from numpy.testing import assert_array_almost_equal
-from sklearn.covariance import EmpiricalCovariance
+from sklearn.covariance import EmpiricalCovariance, LedoitWolf
 
 from junifer.data import get_coordinates
 from junifer.datareader import DefaultDataReader
@@ -23,19 +24,43 @@ from junifer.storage import SQLiteFeatureStorage
 from junifer.testing.datagrabbers import SPMAuditoryTestingDataGrabber
 
 
-def test_FunctionalConnectivitySpheres(tmp_path: Path) -> None:
+if TYPE_CHECKING:
+    from sklearn.base import BaseEstimator
+
+
+@pytest.mark.parametrize(
+    "conn_method_params, cov_estimator",
+    [
+        ({"empirical": False}, LedoitWolf(store_precision=False)),
+        ({"empirical": True}, EmpiricalCovariance(store_precision=False)),
+    ],
+)
+def test_FunctionalConnectivitySpheres(
+    tmp_path: Path,
+    conn_method_params: Dict[str, bool],
+    cov_estimator: Type["BaseEstimator"],
+) -> None:
     """Test FunctionalConnectivitySpheres.
 
     Parameters
     ----------
     tmp_path : pathlib.Path
         The path to the test directory.
+    conn_method_params : dict
+        The parametrized parameters to connectivity measure method.
+    cov_estimator : estimator object
+        The parametrized covariance estimator.
 
     """
     with SPMAuditoryTestingDataGrabber() as dg:
+        # Get element data
         element_data = DefaultDataReader().fit_transform(dg["sub001"])
+        # Setup marker
         marker = FunctionalConnectivitySpheres(
-            coords="DMNBuckner", radius=5.0, cor_method="correlation"
+            coords="DMNBuckner",
+            radius=5.0,
+            conn_method="correlation",
+            conn_method_params=conn_method_params,
         )
         # Check correct output
         assert "matrix" == marker.get_output_type(
@@ -67,7 +92,7 @@ def test_FunctionalConnectivitySpheres(tmp_path: Path) -> None:
         )
         # Compute the connectivity measure
         connectivity_measure = ConnectivityMeasure(
-            kind="correlation"
+            cov_estimator=cov_estimator, kind="correlation"  # type: ignore
         ).fit_transform([extracted_timeseries])[0]
 
         # Check that FC are almost equal
@@ -88,65 +113,9 @@ def test_FunctionalConnectivitySpheres(tmp_path: Path) -> None:
         )
 
 
-def test_FunctionalConnectivitySpheres_empirical(tmp_path: Path) -> None:
-    """Test FunctionalConnectivitySpheres with empirical covariance.
-
-    Parameters
-    ----------
-    tmp_path : pathlib.Path
-        The path to the test directory.
-
-    """
-    with SPMAuditoryTestingDataGrabber() as dg:
-        element_data = DefaultDataReader().fit_transform(dg["sub001"])
-        marker = FunctionalConnectivitySpheres(
-            coords="DMNBuckner",
-            radius=5.0,
-            cor_method="correlation",
-            cor_method_params={"empirical": True},
-        )
-        # Check correct output
-        assert "matrix" == marker.get_output_type(
-            input_type="BOLD", output_feature="functional_connectivity"
-        )
-
-        # Fit-transform the data
-        fc = marker.fit_transform(element_data)
-        fc_bold = fc["BOLD"]["functional_connectivity"]
-
-        assert "data" in fc_bold
-        assert "row_names" in fc_bold
-        assert "col_names" in fc_bold
-        assert fc_bold["data"].shape == (6, 6)
-        assert len(set(fc_bold["row_names"])) == 6
-        assert len(set(fc_bold["col_names"])) == 6
-
-        # Compare with nilearn
-        # Load testing coordinates for the target data
-        testing_coords, _ = get_coordinates(
-            coords="DMNBuckner", target_data=element_data["BOLD"]
-        )
-        # Extract timeseries
-        nifti_spheres_masker = NiftiSpheresMasker(
-            seeds=testing_coords, radius=5.0
-        )
-        extracted_timeseries = nifti_spheres_masker.fit_transform(
-            element_data["BOLD"]["data"]
-        )
-        # Compute the connectivity measure
-        connectivity_measure = ConnectivityMeasure(
-            cov_estimator=EmpiricalCovariance(), kind="correlation"  # type: ignore
-        ).fit_transform([extracted_timeseries])[0]
-
-        # Check that FC are almost equal
-        assert_array_almost_equal(
-            connectivity_measure, fc_bold["data"], decimal=3
-        )
-
-
 def test_FunctionalConnectivitySpheres_error() -> None:
     """Test FunctionalConnectivitySpheres errors."""
     with pytest.raises(ValueError, match="radius should be > 0"):
         FunctionalConnectivitySpheres(
-            coords="DMNBuckner", radius=-0.1, cor_method="correlation"
+            coords="DMNBuckner", radius=-0.1, conn_method="correlation"
         )

junifer/utils/__init__.py

@@ -6,7 +6,7 @@
 
 from .fs import make_executable
 from .logging import configure_logging, logger, raise_error, warn_with_log
-from .helpers import run_ext_cmd
+from .helpers import run_ext_cmd, deep_update
 
 
 __all__ = [
@@ -16,4 +16,5 @@ __all__ = [
     "raise_error",
     "warn_with_log",
     "run_ext_cmd",
+    "deep_update",
 ]

junifer/utils/helpers.py

@@ -3,13 +3,14 @@
 # Authors: Synchon Mandal <s.mandal@fz-juelich.de>
 # License: AGPL
 
+import collections.abc
 import subprocess
-from typing import List
+from typing import Dict, List
 
 from .logging import logger, raise_error
 
 
-__all__ = ["run_ext_cmd"]
+__all__ = ["run_ext_cmd", "deep_update"]
 
 
 def run_ext_cmd(name: str, cmd: List[str]) -> None:
@@ -54,3 +55,30 @@ def run_ext_cmd(name: str, cmd: List[str]) -> None:
             ),
             klass=RuntimeError,
         )
+
+
+def deep_update(d: Dict, u: Dict) -> Dict:
+    """Deep update `d` with `u`.
+
+    From: "https://stackoverflow.com/questions/3232943/update-value-of-a-nested
+    -dictionary-of-varying-depth"
+
+    Parameters
+    ----------
+    d : dict
+        The dictionary to deep-update.
+    u : dict
+        The dictionary to deep-update `d` with.
+
+    Returns
+    -------
+    dict
+        The updated dictionary.
+
+    """
+    for k, v in u.items():
+        if isinstance(v, collections.abc.Mapping):
+            d[k] = deep_update(d.get(k, {}), v)
+        else:
+            d[k] = v
+    return d

junifer/utils/logging.py

@@ -13,6 +13,7 @@ else:  # pragma: no cover
     from looseversion import LooseVersion
 
 import logging
+import warnings
 from pathlib import Path
 from subprocess import PIPE, Popen, TimeoutExpired
 from typing import Dict, NoReturn, Optional, Type, Union
@@ -44,6 +45,23 @@ _logging_types = {
 }
 
 
+# Copied over from stdlib and tweaked to our use-case.
+def _showwarning(message, category, filename, lineno, file=None, line=None):
+    s = warnings.formatwarning(message, category, filename, lineno, line)
+    logger.warning(str(s))
+
+
+# Overwrite warnings display to integrate with logging
+
+
+def capture_warnings():
+    """Capture warnings and log them."""
+    warnings.showwarning = _showwarning
+
+
+capture_warnings()
+
+
 class WrapStdOut(logging.StreamHandler):
     """Dynamically wrap to sys.stdout.
 
@@ -325,5 +343,4 @@ def warn_with_log(
         The warning subclass (default RuntimeWarning).
 
     """
-    logger.warning(msg)
     warn(msg, category=category, stacklevel=2)

junifer/utils/tests/test_logging.py

@@ -145,8 +145,16 @@ def test_log_file(tmp_path: Path) -> None:
         assert any("Warn3 message" in line for line in lines)
         assert any("Error3 message" in line for line in lines)
 
+    # This should raise a warning (test that it was raised)
     with pytest.warns(RuntimeWarning, match=r"Warn raised"):
         warn_with_log("Warn raised")
+
+    # This should log the warning (workaround for pytest messing with logging)
+    from junifer.utils.logging import capture_warnings
+
+    capture_warnings()
+
+    warn_with_log("Warn raised 2")
     with pytest.raises(ValueError, match=r"Error raised"):
         raise_error("Error raised")
     with open(tmp_path / "test4.log") as f:

{junifer-0.0.5.dev208.dist-info → junifer-0.0.5.dev240.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: junifer
-Version: 0.0.5.dev208
+Version: 0.0.5.dev240
 Summary: JUelich NeuroImaging FEature extractoR
 Author-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Synchon Mandal <s.mandal@fz-juelich.de>
 Maintainer-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Synchon Mandal <s.mandal@fz-juelich.de>

{junifer-0.0.5.dev208.dist-info → junifer-0.0.5.dev240.dist-info}/RECORD

@@ -1,5 +1,5 @@
 junifer/__init__.py,sha256=-T9XmiCCL0j3YLx-0Pph15sPfL5FlcBDscajjJ-V4sU,604
-junifer/_version.py,sha256=kedBS_xvcCpCkX8kxPSz2iA8XWihtXq5SiXQfLsn4PU,428
+junifer/_version.py,sha256=6Q_MQ6ezLFpUtQxuhNlj5d2DOuMMDGQedZzC1lzNGWw,428
 junifer/stats.py,sha256=BjQb2lfTGDP9l4UuQYmJFcJJNRfbJDGlNvC06SJaDDE,6237
 junifer/api/__init__.py,sha256=lwyIF0hPc7fICuSoddJfay0LPqlTRxHJ_xbtizgFYZA,312
 junifer/api/cli.py,sha256=53pews3mXkJ7DUDSkV51PbitYnuVAdQRkWG-gjO08Uw,16142
@@ -90,14 +90,14 @@ junifer/data/tests/test_data_utils.py,sha256=_DaiC8K79gs9HFHxr-udNeE2YTM6JA0-1i-
 junifer/data/tests/test_masks.py,sha256=pL42xTzrvy0qLCqpG5p5CdCCqjJ9n5nz7BCUofydfag,15723
 junifer/data/tests/test_parcellations.py,sha256=ZEU1VHIK0AyxpclcJhG_0rQU0phaBU_dHP7Erfi3mN8,38222
 junifer/data/tests/test_template_spaces.py,sha256=PJulN7xHpAcSOTY-UzTG_WPywZEBSlAZGiNG4gzk1_8,3144
-junifer/datagrabber/__init__.py,sha256=uR31UhuNwNZ0i9m3oo8RZtHUyMbnG2sd1i9aLa6aG_o,967
-junifer/datagrabber/base.py,sha256=qVEeWtnnl95owug9gBCmhfG6km3402o0k5VH4QsPt8A,6335
+junifer/datagrabber/__init__.py,sha256=kYvlrRS6f64fwntAuyk_fL2c_vyw9m9mZpMWpm_cxEM,1058
+junifer/datagrabber/base.py,sha256=fFPIt6p3SdZ6vzReGQxK2qJnQzh8HTwBe87A2WYArVI,6538
 junifer/datagrabber/datalad_base.py,sha256=6B7XMIMFlBw3uixDnfoaH4gBU9EzJIO5gwmc0iHniRo,11044
 junifer/datagrabber/dmcc13_benchmark.py,sha256=se9F6QVw9WX22MNld33OQv_BtdW-yPvXXu6kYykxLNw,12225
-junifer/datagrabber/multiple.py,sha256=p_rq99kKtHNr1sAl0GJ4RJ5Ss-uUKMsJVHrdWGi1XB8,4959
-junifer/datagrabber/pattern.py,sha256=pGiYlczva76JRxtsCY7Xuok5wPCGcXWHNZMCXNGUJ_k,16013
+junifer/datagrabber/multiple.py,sha256=IjBcFN-KegIad9bwopsfAQ9b_WRRUHmCbKRX2gmus0Q,6487
+junifer/datagrabber/pattern.py,sha256=iSubnHOJjYck1Zhk_JAYRZjRPKYmfoO81tG1zowd3B4,17039
 junifer/datagrabber/pattern_datalad.py,sha256=QPWXIToYHDU4mvm9lz_hy8BjdqqoCXiGiJKCcATrT-w,4568
-junifer/datagrabber/utils.py,sha256=XoS2B8Gg0YTR7HaJR9GpPFr0drZOn8p1HO7al735mO0,9975
+junifer/datagrabber/pattern_validation_mixin.py,sha256=SSnTdUA7elaTh9HF7syvW-lTBS1VgdSkyOJiw5mT2Vw,13469
 junifer/datagrabber/aomic/__init__.py,sha256=lRezU9dyIEoL4tJYglMX01P-F5_hrnZrJxuaQxF_z2w,358
 junifer/datagrabber/aomic/id1000.py,sha256=wJpZiSZrsfil5w-506bOtKMWm3FllnbB8-cMvGDPiLM,7219
 junifer/datagrabber/aomic/piop1.py,sha256=AcjIueSUmhepuIfmbMEpocV7grUbJ2xKXG94O1dq2FA,9637
@@ -107,15 +107,15 @@ junifer/datagrabber/aomic/tests/test_piop1.py,sha256=J9ei2HLzdJPciysWjRo33cbZsqP
 junifer/datagrabber/aomic/tests/test_piop2.py,sha256=Bk23KvRse4clMTuC88YntSfJnJyTunafC79Y1OJwJI0,4166
 junifer/datagrabber/hcp1200/__init__.py,sha256=yKINewhzkPRcqVpBd6DG02jrs3qLsUbUsi93YJZOUIk,231
 junifer/datagrabber/hcp1200/datalad_hcp1200.py,sha256=hngQYLv4b8tC9Ep2X5A5R_L2sFM3ZJ8dmWTr_OlRLAA,2463
-junifer/datagrabber/hcp1200/hcp1200.py,sha256=xgIU-WZXrEvI7we2RX3sqKowKz1NxtdjtHM6g5RcPzQ,6115
+junifer/datagrabber/hcp1200/hcp1200.py,sha256=AfVPd44CdyMcrUTOfps2PSpTQrXde68QeZaLGkXUTn4,6116
 junifer/datagrabber/hcp1200/tests/test_hcp1200.py,sha256=KJ-Jq01l0a6TaboG898qjBdPTHG1E3PZtHCjJ7n-1X0,10765
 junifer/datagrabber/tests/test_base.py,sha256=fZdVhNhvfht9lpTHrAUf5E6mAfNNUP7OTQ5KLaBQ1gI,3506
-junifer/datagrabber/tests/test_datagrabber_utils.py,sha256=x1nqFiHI9xHBQFwXji0DPUG8crVoEzw6zmi3pKdhJQk,6513
 junifer/datagrabber/tests/test_datalad_base.py,sha256=71erxpAECuy8iLtkmq_SRqfP4sKQf4uEb3O8CThBHT0,16285
 junifer/datagrabber/tests/test_dmcc13_benchmark.py,sha256=DcqkDXXBoabHFVbxekGR2NZyGeugGlxpOwXIwy38Ofg,9109
-junifer/datagrabber/tests/test_multiple.py,sha256=Mx3xfDrQiWG2W5MW24P5L2XiSeALpJ2-jFlzWkKtu9w,5659
+junifer/datagrabber/tests/test_multiple.py,sha256=gdekgSHyRx_EtcMNQpJsGEyo56xSxH5-XSQRQ5P2zt4,8288
 junifer/datagrabber/tests/test_pattern.py,sha256=H55jYRPfT3rMsoIQOAnWJgw3nGrkU7m2xFa3-ed6NQE,9527
 junifer/datagrabber/tests/test_pattern_datalad.py,sha256=5lA4hkYNaIAVy3GjcVqBXj1d-3qd8-14Pv0z6QGqgtI,6483
+junifer/datagrabber/tests/test_pattern_validation_mixin.py,sha256=4diiRduuqMxOZpfWBoe-O9AhDPYb7DLQU8-JaWAfTrg,7494
 junifer/datareader/__init__.py,sha256=9TXyHpy5o-yfs-q8QHGfjUCcWdORp7qv_jrokAOPBP8,293
 junifer/datareader/default.py,sha256=peNQTYHx9x3ZqGjm2Uj5yCLlsJ6X86r0f2XiUgnpw1M,6745
 junifer/datareader/tests/test_default_reader.py,sha256=9dPZSkba1YQjFsA0XwdUbx5sq8DVIEZoy_WfMAcvRus,5220
@@ -133,8 +133,10 @@ junifer/external/h5io/h5io/_h5io.py,sha256=8dWZDYegoPcBkH_fHPdl0eXNWTaRdk9hfIQo8
 junifer/external/h5io/h5io/_version.py,sha256=mFY0GwwuN-a3M8w93_mskS6GZIvv9SNdjLfJaWNsm-I,22
 junifer/external/h5io/h5io/chunked_array.py,sha256=K1HWf7R2Jc7gCzBqAoBjx0ZnMmUhTe3iAO6RF6PdUO4,3338
 junifer/external/h5io/h5io/chunked_list.py,sha256=1Y5BbuWzurJlEFQzJNuDdC3fNZ39ENEMba99X_4VeSM,1952
-junifer/external/nilearn/__init__.py,sha256=Cx9SM-AHU2OmyC5n6YmRv2JMEYp3qoVnxl5bk4XYWjc,222
+junifer/external/nilearn/__init__.py,sha256=UdUKYArx3hvcziln89iaSGZcNGwHvsmbB4E5gS1zvOs,321
+junifer/external/nilearn/junifer_connectivity_measure.py,sha256=y6MSWz_7YjRNfahLiS8_ptmEBoSBqhj6J9E0p7cN1Jw,16847
 junifer/external/nilearn/junifer_nifti_spheres_masker.py,sha256=DbSK2hKrgpHZ_vCRLbVv3YJpLZNkEAG0HFfQQpG6zdU,16546
+junifer/external/nilearn/tests/test_junifer_connectivity_measure.py,sha256=cwm-RMSHLS6GF-z2ioSNln3N9WoSrLf41mGvyYYMd7w,33918
 junifer/external/nilearn/tests/test_junifer_nifti_spheres_masker.py,sha256=zpvBYIvaNjUj9fIUg5K78LRzJqbyMYlUo2UQYS9_lo4,12275
 junifer/markers/__init__.py,sha256=u4BFgS_3GXAwFN2HfqdAhlBkyenLw4IYlMlwXwnjkVQ,1235
 junifer/markers/base.py,sha256=__Z0owDdjTwb7alQneOeoaUqaeCVbHwFRnaRZERi37M,8364
@@ -170,18 +172,18 @@ junifer/markers/falff/falff_spheres.py,sha256=h-A2B8D2KvnvLzBcBeB6Kt3EcXhcfvvIMv
 junifer/markers/falff/tests/test_falff_parcels.py,sha256=Z3n1i8dkYbdXgouUjfIif9yLv5MubBEdrtAA-a6kRcc,4349
 junifer/markers/falff/tests/test_falff_spheres.py,sha256=-VLEvFaF8CMCN_7FLYCSfP7MMjy-gm1Zgu13je5Pku8,4373
 junifer/markers/functional_connectivity/__init__.py,sha256=j7HshYNBjSbjXXM8h_PBKORk--Gb3qw-MSEm0i3XgTI,672
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+junifer/markers/functional_connectivity/tests/test_edge_functional_connectivity_parcels.py,sha256=y0O-eBjOzUp77g6o_II7D5KB2rKtDz_a_hez-MPDU3M,2482
+junifer/markers/functional_connectivity/tests/test_edge_functional_connectivity_spheres.py,sha256=NYWe8kdSVVXlluLm074koDE6xw_t0bhPn47kRYMg1vA,2522
 junifer/markers/functional_connectivity/tests/test_functional_connectivity_base.py,sha256=RmPTrG0uLKb5RgdHXUnH6lon60FxN1JCtr-dsTBaX28,522
-junifer/markers/functional_connectivity/tests/test_functional_connectivity_parcels.py,sha256=ORnuc_PKYNCiVN-m1ubtxJ6Xg484i2BDU9_PPX-BJW0,3234
-junifer/markers/functional_connectivity/tests/test_functional_connectivity_spheres.py,sha256=PYdebNfwU4ArkpjmxehlLbMF5I_meRMla3yR0CN_4mE,5330
+junifer/markers/functional_connectivity/tests/test_functional_connectivity_parcels.py,sha256=GiRtQ-cbbmM4_oekGjIDtFaNkmYON_eSf3F4jzS0XCo,3876
+junifer/markers/functional_connectivity/tests/test_functional_connectivity_spheres.py,sha256=Bu2vicoxET-eHYqmfiPtYmFOhBCjBsXO7vv9UzLdYJQ,4143
 junifer/markers/reho/__init__.py,sha256=_6WkTQcg0ksZguSQGi1XuoMKuGwYs5tvDLVZ1h6xB5E,232
 junifer/markers/reho/_afni_reho.py,sha256=iaZFPJbyB9-QQAZ5-kKxwN0APB5MH85pOAChq-JFLNI,6469
 junifer/markers/reho/_junifer_reho.py,sha256=7-jD28YQQWb3dfT6SxyYfGugFSq8wi7_2hUA-ryiGAo,9307
@@ -257,17 +259,17 @@ junifer/testing/tests/test_spmauditory_datagrabber.py,sha256=1G1emk-Ze59HiNLaYsy
 junifer/testing/tests/test_testing_registry.py,sha256=oerticBaPRaRZm3yANzInLac0Mqph3Y0aZPQFayu7xA,827
 junifer/tests/test_main.py,sha256=GMff7jlisGM9_FsiUwWDte43j-KQJGFRYZpwRRqTkd8,373
 junifer/tests/test_stats.py,sha256=3vPMgYYpWxk8ECDFOMm3-dFBlh4XxjL83SwRBSBAHok,4155
-junifer/utils/__init__.py,sha256=V1-1FKPhACiS2nUr8TTgQFq7irEnp2an5YdIU3Zz7RY,439
+junifer/utils/__init__.py,sha256=F_I7WXtZMrBGGNLN09LvzBRwWKopL2k1z0UgCZvpwj0,471
 junifer/utils/fs.py,sha256=M3CKBLh4gPS6s9giyopgb1hHMXzLb6k3cung2wHVBjs,492
-junifer/utils/helpers.py,sha256=uEdZ3wCgvbWwp1v0DdxIbaV8qORmNSoJIaWmb9haKh0,1366
-junifer/utils/logging.py,sha256=T9gzk7l1O-dmRiZJHggVDkQGzup_P2_FV3xsaoq0BmI,9369
+junifer/utils/helpers.py,sha256=D17zdq1y92fOc-5nwnhaXfgbk8o5yHocLSct9E05YUk,1996
+junifer/utils/logging.py,sha256=ardaiJkDfZMYvak5UIL5Etxg5Ii7inmVQSBdFLdgtb8,9781
 junifer/utils/tests/test_fs.py,sha256=WQS7cKlKEZ742CIuiOYYpueeAhY9PqlastfDVpVVtvE,923
 junifer/utils/tests/test_helpers.py,sha256=k5qqfxK8dFyuewTJyR1Qn6-nFaYNuVr0ysc18bfPjyU,929
-junifer/utils/tests/test_logging.py,sha256=l8oo-AiBV7H6_IzlsNcj__cLeZBUvgIGoaMszD9VaJg,7754
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