junifer 0.0.5.dev180__py3-none-any.whl → 0.0.5.dev183__py3-none-any.whl

junifer/_version.py

@@ -12,5 +12,5 @@ __version__: str
 __version_tuple__: VERSION_TUPLE
 version_tuple: VERSION_TUPLE
 
-__version__ = version = '0.0.5.dev180'
-__version_tuple__ = version_tuple = (0, 0, 5, 'dev180')
+__version__ = version = '0.0.5.dev183'
+__version_tuple__ = version_tuple = (0, 0, 5, 'dev183')

junifer/data/masks.py

@@ -163,6 +163,10 @@ _available_masks: Dict[str, Dict[str, Any]] = {
         "func": compute_epi_mask,
         "space": "inherit",
     },
+    "UKB_15K_GM": {
+        "family": "UKB",
+        "space": "MNI152NLin6Asym",
+    },
 }
 
 
@@ -567,6 +571,8 @@ def load_mask(
     elif t_family == "Callable":
         mask_img = mask_definition["func"]
         mask_fname = None
+    elif t_family == "UKB":
+        mask_fname = _load_ukb_mask(name)
     else:
         raise_error(f"I don't know about the {t_family} mask family.")
 
@@ -632,3 +638,33 @@ def _load_vickery_patil_mask(
     mask_fname = _masks_path / "vickery-patil" / mask_fname
 
     return mask_fname
+
+
+def _load_ukb_mask(name: str) -> Path:
+    """Load UKB mask.
+
+    Parameters
+    ----------
+    name : {"UKB_15K_GM"}
+        The name of the mask.
+
+    Returns
+    -------
+    pathlib.Path
+        File path to the mask image.
+
+    Raises
+    ------
+    ValueError
+        If ``name`` is invalid.
+
+    """
+    if name == "UKB_15K_GM":
+        mask_fname = "UKB_15K_GM_template.nii.gz"
+    else:
+        raise_error(f"Cannot find a UKB mask called {name}")
+
+    # Set path for masks
+    mask_fname = _masks_path / "ukb" / mask_fname
+
+    return mask_fname

junifer/data/tests/test_masks.py

@@ -22,6 +22,7 @@ from numpy.testing import assert_array_almost_equal, assert_array_equal
 
 from junifer.data.masks import (
     _available_masks,
+    _load_ukb_mask,
     _load_vickery_patil_mask,
     compute_brain_mask,
     get_mask,
@@ -212,6 +213,7 @@ def test_register_mask(
     [
         "GM_prob0.2",
         "GM_prob0.2_cortex",
+        "UKB_15K_GM",
     ],
 )
 def test_list_masks_correct(mask_name: str) -> None:
@@ -291,6 +293,21 @@ def test_vickery_patil_error() -> None:
         _load_vickery_patil_mask(name="wrong", resolution=2.0)
 
 
+def test_ukb() -> None:
+    """Test UKB mask."""
+    mask, mask_fname, space = load_mask("UKB_15K_GM", resolution=2.0)
+    assert_array_almost_equal(mask.header["pixdim"][1:4], 2.0)  # type: ignore
+    assert space == "MNI152NLin6Asym"
+    assert mask_fname is not None
+    assert mask_fname.name == "UKB_15K_GM_template.nii.gz"
+
+
+def test_ukb_error() -> None:
+    """Test error for UKB mask."""
+    with pytest.raises(ValueError, match=r"find a UKB mask "):
+        _load_ukb_mask(name="wrong")
+
+
 def test_get_mask() -> None:
     """Test the get_mask function."""
     with OasisVBMTestingDataGrabber() as dg:

{junifer-0.0.5.dev180.dist-info → junifer-0.0.5.dev183.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: junifer
-Version: 0.0.5.dev180
+Version: 0.0.5.dev183
 Summary: JUelich NeuroImaging FEature extractoR
 Author-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Synchon Mandal <s.mandal@fz-juelich.de>
 Maintainer-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Synchon Mandal <s.mandal@fz-juelich.de>

{junifer-0.0.5.dev180.dist-info → junifer-0.0.5.dev183.dist-info}/RECORD

@@ -1,5 +1,5 @@
 junifer/__init__.py,sha256=-T9XmiCCL0j3YLx-0Pph15sPfL5FlcBDscajjJ-V4sU,604
-junifer/_version.py,sha256=qo4yop6ut9LFgev0EsENpBz5BZ_dUgwq-jzypAN6ccM,428
+junifer/_version.py,sha256=apQUG12z976AY8QoVfKVIhwIfOvd8EaePey64fqQTxY,428
 junifer/stats.py,sha256=BjQb2lfTGDP9l4UuQYmJFcJJNRfbJDGlNvC06SJaDDE,6237
 junifer/api/__init__.py,sha256=lwyIF0hPc7fICuSoddJfay0LPqlTRxHJ_xbtizgFYZA,312
 junifer/api/cli.py,sha256=53pews3mXkJ7DUDSkV51PbitYnuVAdQRkWG-gjO08Uw,16142
@@ -58,7 +58,7 @@ junifer/configs/juseless/datagrabbers/tests/test_ucla.py,sha256=NfEKlpaMNImiPLGy
 junifer/configs/juseless/datagrabbers/tests/test_ukb_vbm.py,sha256=b9hjc1mgO--PSRC3id2EzzfE2yWNsuZ2UI47a6sfGZU,1025
 junifer/data/__init__.py,sha256=orvgHyoKkgw9aAR5WCucKI7ZBu9dZL7e7au3TECFD-s,968
 junifer/data/coordinates.py,sha256=1HH2Kz5nzZKN6-wJRmYotPH76fPaL1yYbCt8AhONogk,12496
-junifer/data/masks.py,sha256=kUhH9_YNrT67CE3TEBfk2Uk8hpUr_KX3wxWfH27rXWU,20925
+junifer/data/masks.py,sha256=omKOJLnUpmI1yVUkckWy9HhzbFZuYbYdOyr49xFvEwU,21640
 junifer/data/parcellations.py,sha256=mw1xa6yFWAaVktTkkpCt2ZgSUapZbPwloN2UoPdLzdg,65490
 junifer/data/template_spaces.py,sha256=7I2Hgy-Wh-Uqm_vOvpYQ5H9CFg1Qn5YRX4QU-HZAloc,5796
 junifer/data/utils.py,sha256=dIdhCJMJHoXsjTjEMi2b-NXyCiSKsFZQt-5Ca00Obd4,1330
@@ -81,12 +81,13 @@ junifer/data/VOIs/meta/WM_VOIs.txt,sha256=6uyH5nsv9i5bKS_aEYCgg3wgE7hjw5DI1gD37l
 junifer/data/VOIs/meta/eMDN_VOIs.txt,sha256=p5D4GdBuGl1d5IbXhsuj3XIU6UGMxhzCR-T8Dwfxz30,382
 junifer/data/VOIs/meta/eSAD_VOIs.txt,sha256=DwgDEFSZoAojG5RP6HpSvlRPpXItBzx8ms-1zoSxKRk,268
 junifer/data/VOIs/meta/extDMN_VOIs.txt,sha256=Ogx1QvqZcnXDM3ncF2ha78br8xwQ5wklSjHygtoLpyI,317
+junifer/data/masks/ukb/UKB_15K_GM_template.nii.gz,sha256=jcX1pDOrDsoph8cPMNFVKH5gZYio5G4rJNpOFXm9wJI,946636
 junifer/data/masks/vickery-patil/CAT12_IXI555_MNI152_TMP_GS_GMprob0.2_clean.nii.gz,sha256=j6EY8EtRnUuRxeKgD65Q6B0GPEPIALKDJEIje1TfnAU,88270
 junifer/data/masks/vickery-patil/CAT12_IXI555_MNI152_TMP_GS_GMprob0.2_clean_3mm.nii.gz,sha256=crb_y7YO1vjjf2PwbRJUm8KamPK6fx1y0B_l-E3g8FY,12862
 junifer/data/masks/vickery-patil/GMprob0.2_cortex_3mm_NA_rm.nii.gz,sha256=jfMe_4H9XEnArYms5bSQbqS2V1_HbLHTfI5amQa_Pes,8700
 junifer/data/tests/test_coordinates.py,sha256=BNkz9qFbnwAI0oVlIm_XrT-z4Vsia_rMtMVaoFXT6mU,4328
 junifer/data/tests/test_data_utils.py,sha256=_DaiC8K79gs9HFHxr-udNeE2YTM6JA0-1i-K2cqK9qA,1087
-junifer/data/tests/test_masks.py,sha256=qgrcBAX3oqrca8mKACDxdt_9sDXXUZIU8jTNDlJzLQU,15183
+junifer/data/tests/test_masks.py,sha256=pL42xTzrvy0qLCqpG5p5CdCCqjJ9n5nz7BCUofydfag,15723
 junifer/data/tests/test_parcellations.py,sha256=ZEU1VHIK0AyxpclcJhG_0rQU0phaBU_dHP7Erfi3mN8,38222
 junifer/data/tests/test_template_spaces.py,sha256=PJulN7xHpAcSOTY-UzTG_WPywZEBSlAZGiNG4gzk1_8,3144
 junifer/datagrabber/__init__.py,sha256=uR31UhuNwNZ0i9m3oo8RZtHUyMbnG2sd1i9aLa6aG_o,967
@@ -263,10 +264,10 @@ junifer/utils/logging.py,sha256=T9gzk7l1O-dmRiZJHggVDkQGzup_P2_FV3xsaoq0BmI,9369
 junifer/utils/tests/test_fs.py,sha256=WQS7cKlKEZ742CIuiOYYpueeAhY9PqlastfDVpVVtvE,923
 junifer/utils/tests/test_helpers.py,sha256=k5qqfxK8dFyuewTJyR1Qn6-nFaYNuVr0ysc18bfPjyU,929
 junifer/utils/tests/test_logging.py,sha256=l8oo-AiBV7H6_IzlsNcj__cLeZBUvgIGoaMszD9VaJg,7754
-junifer-0.0.5.dev180.dist-info/AUTHORS.rst,sha256=rmULKpchpSol4ExWFdm-qu4fkpSZPYqIESVJBZtGb6E,163
-junifer-0.0.5.dev180.dist-info/LICENSE.md,sha256=MqCnOBu8uXsEOzRZWh9EBVfVz-kE9NkXcLCrtGXo2yU,34354
-junifer-0.0.5.dev180.dist-info/METADATA,sha256=Sl8jNa8ncy1reirlZDX0UyuaRj535lOwr9vLJhS-2U8,8280
-junifer-0.0.5.dev180.dist-info/WHEEL,sha256=cpQTJ5IWu9CdaPViMhC9YzF8gZuS5-vlfoFihTBC86A,91
-junifer-0.0.5.dev180.dist-info/entry_points.txt,sha256=DxFvKq0pOqRunAK0FxwJcoDfV1-dZvsFDpD5HRqSDhw,48
-junifer-0.0.5.dev180.dist-info/top_level.txt,sha256=4bAq1R2QFQ4b3hohjys2JBvxrl0GKk5LNFzYvz9VGcA,8
-junifer-0.0.5.dev180.dist-info/RECORD,,
+junifer-0.0.5.dev183.dist-info/AUTHORS.rst,sha256=rmULKpchpSol4ExWFdm-qu4fkpSZPYqIESVJBZtGb6E,163
+junifer-0.0.5.dev183.dist-info/LICENSE.md,sha256=MqCnOBu8uXsEOzRZWh9EBVfVz-kE9NkXcLCrtGXo2yU,34354
+junifer-0.0.5.dev183.dist-info/METADATA,sha256=LmI-7IbjDhJhy7OaszHacfS248O4wqMkQi9_qyrT10s,8280
+junifer-0.0.5.dev183.dist-info/WHEEL,sha256=Z4pYXqR_rTB7OWNDYFOm1qRk0RX6GFP2o8LgvP453Hk,91
+junifer-0.0.5.dev183.dist-info/entry_points.txt,sha256=DxFvKq0pOqRunAK0FxwJcoDfV1-dZvsFDpD5HRqSDhw,48
+junifer-0.0.5.dev183.dist-info/top_level.txt,sha256=4bAq1R2QFQ4b3hohjys2JBvxrl0GKk5LNFzYvz9VGcA,8
+junifer-0.0.5.dev183.dist-info/RECORD,,

{junifer-0.0.5.dev180.dist-info → junifer-0.0.5.dev183.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: setuptools (70.1.0)
+Generator: setuptools (70.3.0)
 Root-Is-Purelib: true
 Tag: py3-none-any