junifer 0.0.5.dev131__py3-none-any.whl → 0.0.5.dev145__py3-none-any.whl

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Files changed (123) hide show
  1. junifer/__init__.py +17 -0
  2. junifer/_version.py +2 -2
  3. junifer/api/__init__.py +3 -0
  4. junifer/api/decorators.py +9 -0
  5. junifer/api/functions.py +7 -4
  6. junifer/api/parser.py +3 -0
  7. junifer/api/queue_context/__init__.py +3 -0
  8. junifer/api/res/afni/run_afni_docker.sh +1 -1
  9. junifer/api/res/ants/run_ants_docker.sh +1 -1
  10. junifer/api/res/fsl/run_fsl_docker.sh +1 -1
  11. junifer/configs/juseless/__init__.py +3 -0
  12. junifer/configs/juseless/datagrabbers/__init__.py +9 -0
  13. junifer/configs/juseless/datagrabbers/aomic_id1000_vbm.py +3 -0
  14. junifer/configs/juseless/datagrabbers/camcan_vbm.py +3 -0
  15. junifer/configs/juseless/datagrabbers/ixi_vbm.py +3 -0
  16. junifer/configs/juseless/datagrabbers/ucla.py +3 -0
  17. junifer/configs/juseless/datagrabbers/ukb_vbm.py +3 -0
  18. junifer/data/__init__.py +20 -0
  19. junifer/data/coordinates.py +8 -0
  20. junifer/data/masks.py +10 -0
  21. junifer/data/parcellations.py +9 -0
  22. junifer/data/template_spaces.py +3 -0
  23. junifer/data/utils.py +3 -0
  24. junifer/datagrabber/__init__.py +15 -0
  25. junifer/datagrabber/aomic/__init__.py +3 -0
  26. junifer/datagrabber/aomic/id1000.py +3 -0
  27. junifer/datagrabber/aomic/piop1.py +3 -0
  28. junifer/datagrabber/aomic/piop2.py +3 -0
  29. junifer/datagrabber/base.py +3 -0
  30. junifer/datagrabber/datalad_base.py +3 -0
  31. junifer/datagrabber/hcp1200/__init__.py +3 -0
  32. junifer/datagrabber/hcp1200/datalad_hcp1200.py +3 -0
  33. junifer/datagrabber/hcp1200/hcp1200.py +3 -0
  34. junifer/datagrabber/multiple.py +3 -0
  35. junifer/datagrabber/pattern.py +3 -0
  36. junifer/datagrabber/pattern_datalad.py +3 -0
  37. junifer/datagrabber/utils.py +3 -0
  38. junifer/datareader/__init__.py +3 -0
  39. junifer/datareader/default.py +3 -0
  40. junifer/markers/__init__.py +21 -0
  41. junifer/markers/base.py +21 -7
  42. junifer/markers/brainprint.py +3 -0
  43. junifer/markers/collection.py +3 -0
  44. junifer/markers/complexity/__init__.py +10 -0
  45. junifer/markers/complexity/complexity_base.py +3 -0
  46. junifer/markers/complexity/hurst_exponent.py +3 -0
  47. junifer/markers/complexity/multiscale_entropy_auc.py +3 -0
  48. junifer/markers/complexity/perm_entropy.py +3 -0
  49. junifer/markers/complexity/range_entropy.py +3 -0
  50. junifer/markers/complexity/range_entropy_auc.py +3 -0
  51. junifer/markers/complexity/sample_entropy.py +3 -0
  52. junifer/markers/complexity/tests/test_hurst_exponent.py +7 -0
  53. junifer/markers/complexity/tests/test_multiscale_entropy_auc.py +7 -0
  54. junifer/markers/complexity/tests/test_perm_entropy.py +7 -0
  55. junifer/markers/complexity/tests/test_range_entropy.py +7 -0
  56. junifer/markers/complexity/tests/test_range_entropy_auc.py +7 -0
  57. junifer/markers/complexity/tests/test_sample_entropy.py +7 -0
  58. junifer/markers/complexity/tests/test_weighted_perm_entropy.py +7 -0
  59. junifer/markers/complexity/weighted_perm_entropy.py +3 -0
  60. junifer/markers/ets_rss.py +3 -0
  61. junifer/markers/falff/__init__.py +3 -0
  62. junifer/markers/falff/_afni_falff.py +3 -0
  63. junifer/markers/falff/_junifer_falff.py +3 -0
  64. junifer/markers/falff/falff_base.py +3 -0
  65. junifer/markers/falff/falff_parcels.py +3 -0
  66. junifer/markers/falff/falff_spheres.py +3 -0
  67. junifer/markers/functional_connectivity/__init__.py +9 -0
  68. junifer/markers/functional_connectivity/crossparcellation_functional_connectivity.py +3 -0
  69. junifer/markers/functional_connectivity/edge_functional_connectivity_parcels.py +3 -0
  70. junifer/markers/functional_connectivity/edge_functional_connectivity_spheres.py +3 -0
  71. junifer/markers/functional_connectivity/functional_connectivity_base.py +3 -0
  72. junifer/markers/functional_connectivity/functional_connectivity_parcels.py +3 -0
  73. junifer/markers/functional_connectivity/functional_connectivity_spheres.py +3 -0
  74. junifer/markers/parcel_aggregation.py +3 -0
  75. junifer/markers/reho/__init__.py +3 -0
  76. junifer/markers/reho/_afni_reho.py +3 -0
  77. junifer/markers/reho/_junifer_reho.py +3 -0
  78. junifer/markers/reho/reho_base.py +2 -0
  79. junifer/markers/reho/reho_parcels.py +3 -0
  80. junifer/markers/reho/reho_spheres.py +3 -0
  81. junifer/markers/sphere_aggregation.py +3 -0
  82. junifer/markers/temporal_snr/__init__.py +3 -0
  83. junifer/markers/temporal_snr/temporal_snr_base.py +3 -0
  84. junifer/markers/temporal_snr/temporal_snr_parcels.py +3 -0
  85. junifer/markers/temporal_snr/temporal_snr_spheres.py +3 -0
  86. junifer/onthefly/__init__.py +3 -0
  87. junifer/onthefly/read_transform.py +3 -0
  88. junifer/pipeline/__init__.py +8 -0
  89. junifer/pipeline/pipeline_step_mixin.py +3 -0
  90. junifer/pipeline/registry.py +3 -0
  91. junifer/pipeline/singleton.py +3 -0
  92. junifer/pipeline/update_meta_mixin.py +3 -0
  93. junifer/pipeline/utils.py +3 -0
  94. junifer/pipeline/workdir_manager.py +3 -0
  95. junifer/preprocess/__init__.py +8 -0
  96. junifer/preprocess/base.py +4 -1
  97. junifer/preprocess/confounds/__init__.py +3 -0
  98. junifer/preprocess/confounds/fmriprep_confound_remover.py +3 -0
  99. junifer/preprocess/smoothing/__init__.py +3 -0
  100. junifer/preprocess/warping/__init__.py +3 -0
  101. junifer/preprocess/warping/_ants_warper.py +3 -0
  102. junifer/preprocess/warping/_fsl_warper.py +3 -0
  103. junifer/stats.py +3 -0
  104. junifer/storage/__init__.py +8 -0
  105. junifer/storage/base.py +3 -0
  106. junifer/storage/hdf5.py +3 -0
  107. junifer/storage/pandas_base.py +3 -0
  108. junifer/storage/sqlite.py +3 -0
  109. junifer/storage/utils.py +9 -0
  110. junifer/testing/__init__.py +3 -0
  111. junifer/testing/datagrabbers.py +7 -0
  112. junifer/testing/utils.py +3 -0
  113. junifer/utils/__init__.py +10 -0
  114. junifer/utils/fs.py +3 -0
  115. junifer/utils/helpers.py +3 -0
  116. junifer/utils/logging.py +10 -0
  117. {junifer-0.0.5.dev131.dist-info → junifer-0.0.5.dev145.dist-info}/METADATA +1 -1
  118. {junifer-0.0.5.dev131.dist-info → junifer-0.0.5.dev145.dist-info}/RECORD +123 -123
  119. {junifer-0.0.5.dev131.dist-info → junifer-0.0.5.dev145.dist-info}/AUTHORS.rst +0 -0
  120. {junifer-0.0.5.dev131.dist-info → junifer-0.0.5.dev145.dist-info}/LICENSE.md +0 -0
  121. {junifer-0.0.5.dev131.dist-info → junifer-0.0.5.dev145.dist-info}/WHEEL +0 -0
  122. {junifer-0.0.5.dev131.dist-info → junifer-0.0.5.dev145.dist-info}/entry_points.txt +0 -0
  123. {junifer-0.0.5.dev131.dist-info → junifer-0.0.5.dev145.dist-info}/top_level.txt +0 -0