junifer 0.0.4.dev694__py3-none-any.whl → 0.0.4.dev781__py3-none-any.whl

junifer/markers/tests/test_sphere_aggregation.py

@@ -1,22 +1,23 @@
 """Provide tests for sphere aggregation."""
 
 # Authors: Federico Raimondo <f.raimondo@fz-juelich.de>
+#          Synchon Mandal <s.mandal@fz-juelich.de>
 # License: AGPL
 
-import typing
 from pathlib import Path
-from typing import Dict
 
-import nibabel as nib
 import pytest
-from nilearn import datasets
-from nilearn.image import concat_imgs
 from nilearn.maskers import NiftiSpheresMasker
 from numpy.testing import assert_array_equal
 
-from junifer.data import load_coordinates, load_mask
+from junifer.data import get_coordinates, get_mask
+from junifer.datareader import DefaultDataReader
 from junifer.markers.sphere_aggregation import SphereAggregation
 from junifer.storage import SQLiteFeatureStorage
+from junifer.testing.datagrabbers import (
+    OasisVBMTestingDataGrabber,
+    SPMAuditoryTestingDataGrabber,
+)
 
 
 # Define common variables
@@ -36,51 +37,66 @@ def test_SphereAggregation_input_output() -> None:
 
 def test_SphereAggregation_3D() -> None:
     """Test SphereAggregation object on 3D images."""
-    # Get the testing coordinates (for nilearn)
-    coordinates, _, _ = load_coordinates(COORDS)
-
-    # Get the oasis VBM data
-    oasis_dataset = datasets.fetch_oasis_vbm(n_subjects=1)
-    vbm = oasis_dataset.gray_matter_maps[0]
-    img = nib.load(vbm)
-
-    # Create NiftSpheresMasker
-    nifti_masker = NiftiSpheresMasker(seeds=coordinates, radius=RADIUS)
-    auto4d = nifti_masker.fit_transform(img)
-
-    # Create SphereAggregation object
-    marker = SphereAggregation(
-        coords=COORDS, method="mean", radius=RADIUS, on="VBM_GM"
-    )
-    input = {"VBM_GM": {"data": img, "meta": {}, "space": "MNI"}}
-    jun_values4d = marker.fit_transform(input)["VBM_GM"]["data"]
+    with OasisVBMTestingDataGrabber() as dg:
+        element_data = DefaultDataReader().fit_transform(dg["sub-01"])
+        # Create SphereAggregation object
+        marker = SphereAggregation(
+            coords=COORDS, method="mean", radius=RADIUS, on="VBM_GM"
+        )
+        sphere_agg_vbm_gm_data = marker.fit_transform(element_data)["VBM_GM"][
+            "data"
+        ]
+
+        # Compare with nilearn
+        # Load testing coordinates
+        testing_coords, _ = get_coordinates(
+            coords=COORDS, target_data=element_data["VBM_GM"]
+        )
+        # Extract data
+        nifti_spheres_masker = NiftiSpheresMasker(
+            seeds=testing_coords, radius=RADIUS
+        )
+        nifti_spheres_masked_vbm_gm = nifti_spheres_masker.fit_transform(
+            element_data["VBM_GM"]["data"]
+        )
 
-    assert jun_values4d.ndim == 2
-    assert_array_equal(auto4d.shape, jun_values4d.shape)
-    assert_array_equal(auto4d, jun_values4d)
+        assert sphere_agg_vbm_gm_data.ndim == 2
+        assert_array_equal(
+            nifti_spheres_masked_vbm_gm.shape, sphere_agg_vbm_gm_data.shape
+        )
+        assert_array_equal(nifti_spheres_masked_vbm_gm, sphere_agg_vbm_gm_data)
 
 
 def test_SphereAggregation_4D() -> None:
     """Test SphereAggregation object on 4D images."""
-    # Get the testing coordinates (for nilearn)
-    coordinates, _, _ = load_coordinates(COORDS)
-
-    # Get the SPM auditory data
-    subject_data = datasets.fetch_spm_auditory()
-    fmri_img = concat_imgs(subject_data.func)  # type: ignore
-
-    # Create NiftSpheresMasker
-    nifti_masker = NiftiSpheresMasker(seeds=coordinates, radius=RADIUS)
-    auto4d = nifti_masker.fit_transform(fmri_img)
-
-    # Create SphereAggregation object
-    marker = SphereAggregation(coords=COORDS, method="mean", radius=RADIUS)
-    input = {"BOLD": {"data": fmri_img, "meta": {}, "space": "MNI"}}
-    jun_values4d = marker.fit_transform(input)["BOLD"]["data"]
+    with SPMAuditoryTestingDataGrabber() as dg:
+        element_data = DefaultDataReader().fit_transform(dg["sub001"])
+        # Create SphereAggregation object
+        marker = SphereAggregation(
+            coords=COORDS, method="mean", radius=RADIUS, on="BOLD"
+        )
+        sphere_agg_bold_data = marker.fit_transform(element_data)["BOLD"][
+            "data"
+        ]
+
+        # Compare with nilearn
+        # Load testing coordinates
+        testing_coords, _ = get_coordinates(
+            coords=COORDS, target_data=element_data["BOLD"]
+        )
+        # Extract data
+        nifti_spheres_masker = NiftiSpheresMasker(
+            seeds=testing_coords, radius=RADIUS
+        )
+        nifti_spheres_masked_bold = nifti_spheres_masker.fit_transform(
+            element_data["BOLD"]["data"]
+        )
 
-    assert jun_values4d.ndim == 2
-    assert_array_equal(auto4d.shape, jun_values4d.shape)
-    assert_array_equal(auto4d, jun_values4d)
+        assert sphere_agg_bold_data.ndim == 2
+        assert_array_equal(
+            nifti_spheres_masked_bold.shape, sphere_agg_bold_data.shape
+        )
+        assert_array_equal(nifti_spheres_masked_bold, sphere_agg_bold_data)
 
 
 def test_SphereAggregation_storage(tmp_path: Path) -> None:
@@ -92,124 +108,143 @@ def test_SphereAggregation_storage(tmp_path: Path) -> None:
         The path to the test directory.
 
     """
-    # Get the oasis VBM data
-    oasis_dataset = datasets.fetch_oasis_vbm(n_subjects=1)
-    vbm = oasis_dataset.gray_matter_maps[0]
-    img = nib.load(vbm)
-    uri = tmp_path / "test_sphere_storage_3D.sqlite"
-
-    storage = SQLiteFeatureStorage(uri=uri, upsert="ignore")
-    meta = {
-        "element": {"subject": "sub-01", "session": "ses-01"},
-        "dependencies": {"nilearn", "nibabel"},
-    }
-    input = {"VBM_GM": {"data": img, "meta": meta, "space": "MNI"}}
-    marker = SphereAggregation(
-        coords=COORDS, method="mean", radius=RADIUS, on="VBM_GM"
-    )
-
-    marker.fit_transform(input, storage=storage)
-
-    features: Dict = typing.cast(Dict, storage.list_features())
-    assert any(
-        x["name"] == "VBM_GM_SphereAggregation" for x in features.values()
-    )
-
-    meta = {
-        "element": {"subject": "sub-01", "session": "ses-01"},
-        "dependencies": {"nilearn", "nibabel"},
-    }
-    # Get the SPM auditory data
-    subject_data = datasets.fetch_spm_auditory()
-    fmri_img = concat_imgs(subject_data.func)  # type: ignore
-    input = {"BOLD": {"data": fmri_img, "meta": meta, "space": "MNI"}}
-    marker = SphereAggregation(
-        coords=COORDS, method="mean", radius=RADIUS, on="BOLD"
-    )
-
-    marker.fit_transform(input, storage=storage)
-    features: Dict = typing.cast(Dict, storage.list_features())
-    assert any(
-        x["name"] == "BOLD_SphereAggregation" for x in features.values()
-    )
+    # Store 3D
+    with OasisVBMTestingDataGrabber() as dg:
+        element_data = DefaultDataReader().fit_transform(dg["sub-01"])
+        storage = SQLiteFeatureStorage(
+            uri=tmp_path / "test_sphere_storage_3D.sqlite", upsert="ignore"
+        )
+        marker = SphereAggregation(
+            coords=COORDS, method="mean", radius=RADIUS, on="VBM_GM"
+        )
+        marker.fit_transform(input=element_data, storage=storage)
+        features = storage.list_features()
+        assert any(
+            x["name"] == "VBM_GM_SphereAggregation" for x in features.values()
+        )
+
+    # Store 4D
+    with SPMAuditoryTestingDataGrabber() as dg:
+        element_data = DefaultDataReader().fit_transform(dg["sub001"])
+        storage = SQLiteFeatureStorage(
+            uri=tmp_path / "test_sphere_storage_4D.sqlite", upsert="ignore"
+        )
+        marker = SphereAggregation(
+            coords=COORDS, method="mean", radius=RADIUS, on="BOLD"
+        )
+        marker.fit_transform(input=element_data, storage=storage)
+        features = storage.list_features()
+        assert any(
+            x["name"] == "BOLD_SphereAggregation" for x in features.values()
+        )
 
 
 def test_SphereAggregation_3D_mask() -> None:
     """Test SphereAggregation object on 3D images using mask."""
-    # Get the testing coordinates (for nilearn)
-    coordinates, _, _ = load_coordinates(COORDS)
-
-    # Get one mask
-    mask_img, _, _ = load_mask("GM_prob0.2")
-
-    # Get the oasis VBM data
-    oasis_dataset = datasets.fetch_oasis_vbm(n_subjects=1)
-    vbm = oasis_dataset.gray_matter_maps[0]
-    img = nib.load(vbm)
-
-    # Create NiftSpheresMasker
-    nifti_masker = NiftiSpheresMasker(
-        seeds=coordinates, radius=RADIUS, mask_img=mask_img
-    )
-    auto4d = nifti_masker.fit_transform(img)
-
-    # Create SphereAggregation object
-    marker = SphereAggregation(
-        coords=COORDS,
-        method="mean",
-        radius=RADIUS,
-        on="VBM_GM",
-        masks="GM_prob0.2",
-    )
-    input = {"VBM_GM": {"data": img, "meta": {}, "space": "MNI"}}
-    jun_values4d = marker.fit_transform(input)["VBM_GM"]["data"]
-
-    assert jun_values4d.ndim == 2
-    assert_array_equal(auto4d.shape, jun_values4d.shape)
-    assert_array_equal(auto4d, jun_values4d)
+    with OasisVBMTestingDataGrabber() as dg:
+        element_data = DefaultDataReader().fit_transform(dg["sub-01"])
+        # Create SphereAggregation object
+        marker = SphereAggregation(
+            coords=COORDS,
+            method="mean",
+            radius=RADIUS,
+            on="VBM_GM",
+            masks="compute_brain_mask",
+        )
+        sphere_agg_vbm_gm_data = marker.fit_transform(element_data)["VBM_GM"][
+            "data"
+        ]
+
+        # Compare with nilearn
+        # Load testing coordinates
+        testing_coords, _ = get_coordinates(
+            coords=COORDS, target_data=element_data["VBM_GM"]
+        )
+        # Load mask
+        mask_img = get_mask(
+            "compute_brain_mask", target_data=element_data["VBM_GM"]
+        )
+        # Extract data
+        nifti_spheres_masker = NiftiSpheresMasker(
+            seeds=testing_coords, radius=RADIUS, mask_img=mask_img
+        )
+        nifti_spheres_masked_vbm_agg = nifti_spheres_masker.fit_transform(
+            element_data["VBM_GM"]["data"]
+        )
+
+        assert sphere_agg_vbm_gm_data.ndim == 2
+        assert_array_equal(
+            nifti_spheres_masked_vbm_agg.shape,
+            nifti_spheres_masked_vbm_agg.shape,
+        )
+        assert_array_equal(
+            nifti_spheres_masked_vbm_agg, nifti_spheres_masked_vbm_agg
+        )
 
 
 def test_SphereAggregation_4D_agg_time() -> None:
     """Test SphereAggregation object on 4D images, aggregating time."""
-    # Get the testing coordinates (for nilearn)
-    coordinates, _, _ = load_coordinates(COORDS)
-
-    # Get the SPM auditory data
-    subject_data = datasets.fetch_spm_auditory()
-    fmri_img = concat_imgs(subject_data.func)  # type: ignore
-
-    # Create NiftSpheresMasker
-    nifti_masker = NiftiSpheresMasker(seeds=coordinates, radius=RADIUS)
-    auto4d = nifti_masker.fit_transform(fmri_img)
-    auto_mean = auto4d.mean(axis=0)
-
-    # Create SphereAggregation object
-    marker = SphereAggregation(
-        coords=COORDS, method="mean", radius=RADIUS, time_method="mean"
-    )
-    input = {"BOLD": {"data": fmri_img, "meta": {}, "space": "MNI"}}
-    jun_values4d = marker.fit_transform(input)["BOLD"]["data"]
-
-    assert jun_values4d.ndim == 1
-    assert_array_equal(auto_mean.shape, jun_values4d.shape)
-    assert_array_equal(auto_mean, jun_values4d)
-
-    auto_pick_0 = auto4d[:1, :]
-    marker = SphereAggregation(
-        coords=COORDS,
-        method="mean",
-        radius=RADIUS,
-        time_method="select",
-        time_method_params={"pick": [0]},
-    )
-
-    input = {"BOLD": {"data": fmri_img, "meta": {}, "space": "MNI"}}
-    jun_values4d = marker.fit_transform(input)["BOLD"]["data"]
-
-    assert jun_values4d.ndim == 2
-    assert_array_equal(auto_pick_0.shape, jun_values4d.shape)
-    assert_array_equal(auto_pick_0, jun_values4d)
+    with SPMAuditoryTestingDataGrabber() as dg:
+        element_data = DefaultDataReader().fit_transform(dg["sub001"])
+        # Create SphereAggregation object
+        marker = SphereAggregation(
+            coords=COORDS,
+            method="mean",
+            radius=RADIUS,
+            time_method="mean",
+            on="BOLD",
+        )
+        sphere_agg_bold_data = marker.fit_transform(element_data)["BOLD"][
+            "data"
+        ]
+
+        # Compare with nilearn
+        # Load testing coordinates
+        testing_coords, _ = get_coordinates(
+            coords=COORDS, target_data=element_data["BOLD"]
+        )
+        # Extract data
+        nifti_spheres_masker = NiftiSpheresMasker(
+            seeds=testing_coords, radius=RADIUS
+        )
+        nifti_spheres_masked_bold = nifti_spheres_masker.fit_transform(
+            element_data["BOLD"]["data"]
+        )
+        nifti_spheres_masked_bold_mean = nifti_spheres_masked_bold.mean(axis=0)
 
+        assert sphere_agg_bold_data.ndim == 1
+        assert_array_equal(
+            nifti_spheres_masked_bold_mean.shape, sphere_agg_bold_data.shape
+        )
+        assert_array_equal(
+            nifti_spheres_masked_bold_mean, sphere_agg_bold_data
+        )
+
+        # Test picking first time point
+        nifti_spheres_masked_bold_pick_0 = nifti_spheres_masked_bold[:1, :]
+        marker = SphereAggregation(
+            coords=COORDS,
+            method="mean",
+            radius=RADIUS,
+            time_method="select",
+            time_method_params={"pick": [0]},
+            on="BOLD",
+        )
+        sphere_agg_bold_data = marker.fit_transform(element_data)["BOLD"][
+            "data"
+        ]
+
+        assert sphere_agg_bold_data.ndim == 2
+        assert_array_equal(
+            nifti_spheres_masked_bold_pick_0.shape, sphere_agg_bold_data.shape
+        )
+        assert_array_equal(
+            nifti_spheres_masked_bold_pick_0, sphere_agg_bold_data
+        )
+
+
+def test_SphereAggregation_errors() -> None:
+    """Test errors for SphereAggregation."""
     with pytest.raises(ValueError, match="can only be used with BOLD data"):
         SphereAggregation(
             coords=COORDS,
@@ -231,12 +266,23 @@ def test_SphereAggregation_4D_agg_time() -> None:
             on="VBM_GM",
         )
 
-    with pytest.warns(RuntimeWarning, match="No time dimension to aggregate"):
-        input = {
-            "BOLD": {
-                "data": fmri_img.slicer[..., 0:1],
-                "meta": {},
-                "space": "MNI",
-            }
-        }
-        marker.fit_transform(input)
+
+def test_SphereAggregation_warning() -> None:
+    """Test warning for SphereAggregation."""
+    with SPMAuditoryTestingDataGrabber() as dg:
+        element_data = DefaultDataReader().fit_transform(dg["sub001"])
+        with pytest.warns(
+            RuntimeWarning, match="No time dimension to aggregate"
+        ):
+            marker = SphereAggregation(
+                coords=COORDS,
+                method="mean",
+                radius=RADIUS,
+                time_method="select",
+                time_method_params={"pick": [0]},
+                on="BOLD",
+            )
+            element_data["BOLD"]["data"] = element_data["BOLD"]["data"].slicer[
+                ..., 0:1
+            ]
+            marker.fit_transform(element_data)

{junifer-0.0.4.dev694.dist-info → junifer-0.0.4.dev781.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: junifer
-Version: 0.0.4.dev694
+Version: 0.0.4.dev781
 Summary: JUelich NeuroImaging FEature extractoR
 Author-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Synchon Mandal <s.mandal@fz-juelich.de>
 Maintainer-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Synchon Mandal <s.mandal@fz-juelich.de>

{junifer-0.0.4.dev694.dist-info → junifer-0.0.4.dev781.dist-info}/RECORD

@@ -1,15 +1,17 @@
 junifer/__init__.py,sha256=x1UR2jUcrUdm2HNl-3Qvyi4UUrU6ms5qm2qcmNY7zZk,391
-junifer/_version.py,sha256=gN01pTieEfbO9Jno4xsc96hXxQnactmcALbG_NJ1CdE,428
+junifer/_version.py,sha256=DG1TQuA0pxGHQP7YoxTcX0i7VCt9fBbd9PHx3LLTXh0,428
 junifer/stats.py,sha256=sU5IZ2qFZWbzgSutQS_z42miIVItpSGmQYBn6KkD5fA,6162
 junifer/api/__init__.py,sha256=YILu9M7SC0Ri4CVd90fELH2OnK_gvCYAXCoqBNCFE8E,257
 junifer/api/cli.py,sha256=auw38tIH7ipTnaADM7on0or7zauY-BFII8nd-eRUEJs,13664
 junifer/api/decorators.py,sha256=8bnwHPAe7VgzKxl--M_e0umdAlTVSzaJQHEJZ5kof5k,2580
-junifer/api/functions.py,sha256=Nvkby-Nlef_mMizdENC_Bodx8_MS5yoJ0nLsU7aGMgE,11255
+junifer/api/functions.py,sha256=bH8tkbkpZmU8jiQqvSsbIRp-B__Uie0BNZy_yVwRzs8,11579
 junifer/api/parser.py,sha256=a3SSC2xO-PF1pqXZXFq8Sh9aVd-dmHolJbCkGyOUTAM,4416
 junifer/api/utils.py,sha256=dyjTdPMwX9qeCrn8SQT2Pjshfnu-y1FEyujV7lCzvm0,3333
-junifer/api/queue_context/__init__.py,sha256=lrDX54HCWt7-hvJ2XTP3dADQhWFFZZR9GfZh2cgCyAI,223
-junifer/api/queue_context/htcondor_adapter.py,sha256=XEzwMCFwGCoSReJKm3TU9poVN5-7lRZ1KUJw6_8v0b0,12681
+junifer/api/queue_context/__init__.py,sha256=x0fT0ax-jPI0Fefg2quJ6VCIwhJ9rUQEjCNqxDXw7WM,287
+junifer/api/queue_context/gnu_parallel_local_adapter.py,sha256=53zwa95agzx3hM1PMmHlOaApZ-SQpbQjVuac9vbpTLk,9113
+junifer/api/queue_context/htcondor_adapter.py,sha256=rsVwXP1crkopdwIKVU369crX7WCTr63iE8WpQEX8e9M,12785
 junifer/api/queue_context/queue_context_adapter.py,sha256=a6UE8xavDfuaZbkWYsayVs6l-rwIrbpFSpqSyHsEeYY,1577
+junifer/api/queue_context/tests/test_gnu_parallel_local_adapter.py,sha256=HD_fD-nNm77EVjNpcZ968fqYUWNzylkHvFH7sFEFXN4,5393
 junifer/api/queue_context/tests/test_htcondor_adapter.py,sha256=XmtdqoUmYTdkwGqRvIX52_n-vaVnPfvz81K4iSc6P0c,7255
 junifer/api/res/run_conda.sh,sha256=eskIn-fotITOlh--IUQKXh-SBOZkDkK8QvDcdQsyJ0M,509
 junifer/api/res/run_venv.sh,sha256=OF-LOdOdpjCU0JX6Dz1boG4ErPutTiVVD_N7j520Fvk,499
@@ -28,11 +30,12 @@ junifer/api/res/fsl/img2imgcoord,sha256=Zmaw3oJYrEltcXiPyEubXry9ppAq3SND52tdDWGg
 junifer/api/res/fsl/run_fsl_docker.sh,sha256=mRLtZo0OgDwleoee2MG6rYI37HVuGNk9zOADwcl97RA,1122
 junifer/api/res/fsl/std2imgcoord,sha256=-X5wRH6XMl0yqnTACJX6MFhO8DFOEWg42MHRxGvimXg,49
 junifer/api/tests/test_api_utils.py,sha256=zDRQiqFOaoO02FpzJCxEbZvsP4u4__Yr25e5k5MJwuI,2713
-junifer/api/tests/test_cli.py,sha256=hou8Jn31v0SfjAwf5zIqQEbA1nxvL6uvVZUjnghAG3k,8553
-junifer/api/tests/test_functions.py,sha256=WvedMpHZ9ckbvkuOgCxnyZLrKdi5bR4hGJyO6ywkbIA,15531
+junifer/api/tests/test_cli.py,sha256=X24TrEvSXnD8ysVMlaSHPsJPOOUPAzLxLgb3jCj1ahg,8461
+junifer/api/tests/test_functions.py,sha256=mvxdaGHxPje-aQGS2fo95xjU7jOf8TYaTWqwFZ5T0oY,17215
 junifer/api/tests/test_parser.py,sha256=eUz2JPVb0_cxvoeI1O_C5PMNs5v_lDzGsN6fV1VW5Eg,6109
 junifer/api/tests/data/gmd_mean.yaml,sha256=Ohb_C5cfQMK-59U9O1ZhejXyBtzLc5Y4cv8QyYq2azg,330
 junifer/api/tests/data/gmd_mean_htcondor.yaml,sha256=f7NLv_KIJXTiPNFmOWl2Vw8EfwojhfkGtwbh5prbd6w,417
+junifer/api/tests/data/partly_cloudy_agg_mean_tian.yml,sha256=nS8K_R1hEuV71Vv-i9SYjnDGAK2FClQqBiE4kOuQ_ys,313
 junifer/configs/__init__.py,sha256=r6BU6vW7FVapSD81j24QeQiZe1oKspsJJRRPjXnCk00,120
 junifer/configs/juseless/__init__.py,sha256=Ws98DvlLEMHfwW6BjmvHQmqTlFRDps9r4pLAfNjfEiM,149
 junifer/configs/juseless/datagrabbers/__init__.py,sha256=tqCLmelWqB1xfElvknnaJ5oVRPp9XVXtZLzIpxYIghg,452
@@ -47,10 +50,10 @@ junifer/configs/juseless/datagrabbers/tests/test_ixi_vbm.py,sha256=8jxpNZelXwpJG
 junifer/configs/juseless/datagrabbers/tests/test_ucla.py,sha256=e-jdvcZ9B0mka6_573JJU_cGwSaUV54U8X_n0UadtJY,3351
 junifer/configs/juseless/datagrabbers/tests/test_ukb_vbm.py,sha256=b9hjc1mgO--PSRC3id2EzzfE2yWNsuZ2UI47a6sfGZU,1025
 junifer/data/__init__.py,sha256=1E6JtzpnjjA0IutkJkarEik9NhCP9PPI6K0-37XDZVg,602
-junifer/data/coordinates.py,sha256=SG3nSDBoH5oDsvo6qjqg3X8rHK86vYQRa3bpfZ0e4zE,12833
-junifer/data/masks.py,sha256=81v3GhAf9lc_CobV9f6n_vMK1jWZCbeANmopa02XZOQ,17744
-junifer/data/parcellations.py,sha256=o10afxUnQXdClW2thFFz5mAED6ptMkvSVRaj0LxiwKc,63312
-junifer/data/template_spaces.py,sha256=fHuihkPCq816rhvI72Us57cSnEPqDf7gWpVZIhOkoMY,4862
+junifer/data/coordinates.py,sha256=Y_-gGCvIqxjArGf-E6LmYzz6ZIbG0ugw5NjgIeirXuA,12850
+junifer/data/masks.py,sha256=u_DDKg8bv0Fec_DwEc1Ledajy5yen3VT-ZblQT6cwaI,23473
+junifer/data/parcellations.py,sha256=tWTrZE68K1X-_1kekRFhVmbrHX_lfSipjaPPjgy0etM,65220
+junifer/data/template_spaces.py,sha256=V_rsSeyXk1TtOtPuDeRtJxDfr0YU08ZB0JLgXNT3DIE,5752
 junifer/data/utils.py,sha256=Jmbc7SLzy4nLP_zkWv_aJzb1MZ27tutJ98ifsECCamM,1295
 junifer/data/VOIs/meta/AutobiographicalMemory_VOIs.txt,sha256=9af38naeL18Tlt_gy_ep6vyTAxOB336JYjbo5FvP8PQ,686
 junifer/data/VOIs/meta/CogAC_VOIs.txt,sha256=Sr5_E712OLdeQRyUcDNM0wLBvZIyO6gc9Q7KkyJHX1A,398
@@ -76,27 +79,27 @@ junifer/data/masks/vickery-patil/CAT12_IXI555_MNI152_TMP_GS_GMprob0.2_clean_3mm.
 junifer/data/masks/vickery-patil/GMprob0.2_cortex_3mm_NA_rm.nii.gz,sha256=jfMe_4H9XEnArYms5bSQbqS2V1_HbLHTfI5amQa_Pes,8700
 junifer/data/tests/test_coordinates.py,sha256=BNkz9qFbnwAI0oVlIm_XrT-z4Vsia_rMtMVaoFXT6mU,4328
 junifer/data/tests/test_data_utils.py,sha256=_DaiC8K79gs9HFHxr-udNeE2YTM6JA0-1i-K2cqK9qA,1087
-junifer/data/tests/test_masks.py,sha256=wZ7nsY55on6LpJdRm7VXp1qqQQlENmSK6bNOgiMTE4M,14572
-junifer/data/tests/test_parcellations.py,sha256=aUq6t1s6yP_Sw-Ur8mZMkODYgE8VTQ36Y3l3UGprUdk,38001
-junifer/data/tests/test_template_spaces.py,sha256=EDsGYBAwjqjOANDNssXaaXPkNv9P658JRtCN2vUulf8,2258
+junifer/data/tests/test_masks.py,sha256=cZmj6UZmuyqXI-8zMqAkuim6DWYecjaMCPo00cr_J5g,16160
+junifer/data/tests/test_parcellations.py,sha256=ZEU1VHIK0AyxpclcJhG_0rQU0phaBU_dHP7Erfi3mN8,38222
+junifer/data/tests/test_template_spaces.py,sha256=PJulN7xHpAcSOTY-UzTG_WPywZEBSlAZGiNG4gzk1_8,3144
 junifer/datagrabber/__init__.py,sha256=pZHJIY8nAlbVngsyRScE6a6GKbytiwjJB7SdJNqIbl4,680
 junifer/datagrabber/base.py,sha256=clErdDX5jz8LTjwPTQPCv3jfELCJ2vObg7ks8imAx8Y,6224
 junifer/datagrabber/datalad_base.py,sha256=dDaBiIePPP6-G4ycgBMxTcXxs4vkg-yDS3OBURK4VGs,10731
-junifer/datagrabber/dmcc13_benchmark.py,sha256=lZpGd_6mUmFPcaqERVWPHIzJq_h_muvh1ifwxj6qqdA,11387
+junifer/datagrabber/dmcc13_benchmark.py,sha256=C1ZzeQV7NsdIL5HCkjcZjE6uvecqt6ZY244OfvKD-Zo,11521
 junifer/datagrabber/multiple.py,sha256=eXQIsvSNvD8GuEITjMaMoi1GwoeyWXXbQMRi-f2qgc4,4923
 junifer/datagrabber/pattern.py,sha256=uGobDTrRhq-XPNIz0z3eIeIzmNOYFajEXwa7OWqno5g,10720
 junifer/datagrabber/pattern_datalad.py,sha256=SyXhM0XQEF45poNaWyVAG054BSCYyqJ-JUwbRo05nyk,1653
 junifer/datagrabber/utils.py,sha256=-i5Pw7w72RO4SRapWYglIC0Lve8e8Mo3Gmu0z6A_PbY,3516
 junifer/datagrabber/aomic/__init__.py,sha256=R7yrRVBWsBW25CH0fw-KHpFwb_EC-MlPKDzssGfj5A0,281
-junifer/datagrabber/aomic/id1000.py,sha256=1n1u3Ro5BZam14hDwZpyU3bxyXVYDSjKdbVm0bVFwCs,5564
-junifer/datagrabber/aomic/piop1.py,sha256=kEdzzxauJ0ovb-xQLlBKx4Tu5ncP0vix_b6fAfNk4Ok,7584
-junifer/datagrabber/aomic/piop2.py,sha256=Wve4Pe3PKCEZofLmBQ3Q_7wiNal2aIcNJlRbusOnD2g,7203
+junifer/datagrabber/aomic/id1000.py,sha256=Cfp55jGzillWJ_SSeSKF33Cacl5FvVEb80B2Ieooy3I,5698
+junifer/datagrabber/aomic/piop1.py,sha256=wSqQUyHAoSf-1BPDQmBrowoRviFZznkox-iBWJ3NxOo,7718
+junifer/datagrabber/aomic/piop2.py,sha256=SIegiR2ybC8Uok0KDhRauSwhVi21z5cyOJiI698-k90,7337
 junifer/datagrabber/aomic/tests/test_id1000.py,sha256=eejuGiNQdX_s_8klGROd8OD8O5OprQywWN6O-JU3jD4,4824
 junifer/datagrabber/aomic/tests/test_piop1.py,sha256=Trp905MCT4jhnCg1leP0PzpEVc_icoKJZrI0TwVCwSE,5578
 junifer/datagrabber/aomic/tests/test_piop2.py,sha256=KAMU8eoQbKV3n9qRWbpZ24g-qN9uzZ55ZlofcSB9BIA,5377
 junifer/datagrabber/hcp1200/__init__.py,sha256=zy4Qq1_m3vECEhioG-UDteco2b5cni_8xuElICaRtt4,189
 junifer/datagrabber/hcp1200/datalad_hcp1200.py,sha256=p5Bbg09qoM46km9eFSlspwLwOe6LMJFSIZ9NC9E2lmc,2432
-junifer/datagrabber/hcp1200/hcp1200.py,sha256=AQz4XJJsAnEYpYaJDdMlL2_jHavkpnBRleHGwQuLe68,6003
+junifer/datagrabber/hcp1200/hcp1200.py,sha256=6lNk3wjd6elVFeiQfmU140fsNoZwKFQjipbhlf1KXMk,6134
 junifer/datagrabber/hcp1200/tests/test_hcp1200.py,sha256=KJ-Jq01l0a6TaboG898qjBdPTHG1E3PZtHCjJ7n-1X0,10765
 junifer/datagrabber/tests/test_base.py,sha256=TBv14m7JZCvF6OPKG2MesMI7MPm-BkCAzOHb1GmMrG8,3738
 junifer/datagrabber/tests/test_datagrabber_utils.py,sha256=08fdnXRehAhrWoNdMP_2Ecgam7a1uMbt1i0wIpderEg,2795
@@ -147,8 +150,8 @@ junifer/markers/falff/_junifer_falff.py,sha256=DAwimHqYrZ0EITXwceM5R8cQdGvy-wWjS
 junifer/markers/falff/falff_base.py,sha256=ywfPqMa11xSHiY1W-OeLrmK67WQx-9mRoXUV2gIZJOo,5698
 junifer/markers/falff/falff_parcels.py,sha256=xQu73cfYDQvOPqZv7HFmxy7YR1Apx0w3Qr2nzUMPFeU,5012
 junifer/markers/falff/falff_spheres.py,sha256=wQzNI_IAQMRiwZPB3shjd0wlbW-IKIXArMCQuVy8C4I,5543
-junifer/markers/falff/tests/test_falff_parcels.py,sha256=HjyL4VVvQdOewvszJQLLBLSDcJU8JUuvaOZ5DkkWQ4Y,3991
-junifer/markers/falff/tests/test_falff_spheres.py,sha256=tAIcArv4astm3_olc8Vqa0KK3Z4B8BWzKQhkJnVT-_A,4027
+junifer/markers/falff/tests/test_falff_parcels.py,sha256=xvEJ9PPjvOfsmyYyEAiycj_35EOivEkLue5yPHSptCs,4009
+junifer/markers/falff/tests/test_falff_spheres.py,sha256=E-Hsny-iH34TmWIMXEmq6j-q0qNpAYv-cwnxZDeMnlg,4040
 junifer/markers/functional_connectivity/__init__.py,sha256=Uq8aXpHJesedJNHEixpc4bn7VvYZMhf710jyiX45XlE,499
 junifer/markers/functional_connectivity/crossparcellation_functional_connectivity.py,sha256=YEtjAnmEF98DQm6HRtWqoTdupF4bU1-UKh9rRx1LY-E,5215
 junifer/markers/functional_connectivity/edge_functional_connectivity_parcels.py,sha256=z5iL8W1z2fDMxRIY_Exc99qnus_DVCPQ8aTnvfRrhp8,4339
@@ -156,33 +159,33 @@ junifer/markers/functional_connectivity/edge_functional_connectivity_spheres.py,
 junifer/markers/functional_connectivity/functional_connectivity_base.py,sha256=MKwngbj7pDVCxcJPZPrTAi7dh6hjak0McEonk20PkWI,5179
 junifer/markers/functional_connectivity/functional_connectivity_parcels.py,sha256=QBaJQfgSqxGlnD47LMHJQqXvPlZF5a79yVmmDFJg-WQ,3990
 junifer/markers/functional_connectivity/functional_connectivity_spheres.py,sha256=ZdMylng5uvlA4JDz-8giNeDh_hTWh4k2fuPx_HowfH0,4690
-junifer/markers/functional_connectivity/tests/test_crossparcellation_functional_connectivity.py,sha256=iW_YgN3Szk4dyFe5K3jnhHNvbl0ToXkSoHatYw5qwb8,2904
-junifer/markers/functional_connectivity/tests/test_edge_functional_connectivity_parcels.py,sha256=OrJbRpeX7Qb7qAcvOiE3jti4Cw9Hw5h8Wam3qPjTDsA,1991
-junifer/markers/functional_connectivity/tests/test_edge_functional_connectivity_spheres.py,sha256=AGrjz9cFCSiS2haBEnVT--4t89XkBUtg5c76JOtVgUM,2369
+junifer/markers/functional_connectivity/tests/test_crossparcellation_functional_connectivity.py,sha256=0TOJhdjrD_96j80Yt4AmtOWxoQLDF_pdVW9mVHsm_uU,3142
+junifer/markers/functional_connectivity/tests/test_edge_functional_connectivity_parcels.py,sha256=gXJHBm56TCwFMK7NGtO9PHOdyr0Ymlm0jByusfrBakE,1992
+junifer/markers/functional_connectivity/tests/test_edge_functional_connectivity_spheres.py,sha256=FhlRqiKzk_W7v4Yc1pgyzUp6SKXu_9kq7dPc1GfkdXA,2197
 junifer/markers/functional_connectivity/tests/test_functional_connectivity_base.py,sha256=RmPTrG0uLKb5RgdHXUnH6lon60FxN1JCtr-dsTBaX28,522
-junifer/markers/functional_connectivity/tests/test_functional_connectivity_parcels.py,sha256=CN6buyF0hxqzQUefz0KBkQSndwSXoZ5ius-H-WGhslY,3210
-junifer/markers/functional_connectivity/tests/test_functional_connectivity_spheres.py,sha256=KOaMkLf7CEd1H8A92WpZAy6X6VNf6TADzYqsqXqvV4Q,4278
+junifer/markers/functional_connectivity/tests/test_functional_connectivity_parcels.py,sha256=iV1HY2t0ywBjOn06SLBlfn3x2c3Yuopq8W4pPQyfdzQ,3096
+junifer/markers/functional_connectivity/tests/test_functional_connectivity_spheres.py,sha256=wMK5GVcRz68zsCPMtTXxoG7H68Ab8wk9_bsrcyRz1R4,5090
 junifer/markers/reho/__init__.py,sha256=9IfeAxKEVgMWbhud-8T54Le07I4pR6A29sMKeFtvEPg,189
 junifer/markers/reho/_afni_reho.py,sha256=YZQAG8iPPOqYWZgnzbySLFbRKadL5WUYfaPbWAWHzEk,6444
 junifer/markers/reho/_junifer_reho.py,sha256=oATv5cBbc42HdxpKbeokuflKYrx6vitqjiVfS_f4Ibs,9279
 junifer/markers/reho/reho_base.py,sha256=04rQFivmeZx7EG9-fP00bp0rKruUAi8x_ngVoMSjSl4,4492
 junifer/markers/reho/reho_parcels.py,sha256=zOx6pYPqwNQ40H-0qZguWUTOGo9XQ1NLiA2OtSJn8LI,6142
 junifer/markers/reho/reho_spheres.py,sha256=xAnEVIV-5Hq9CbEkzcpoL2rlcU5SsifONib9BPJaVDA,6758
-junifer/markers/reho/tests/test_reho_parcels.py,sha256=7LmQaTYdYxHsV4SpmhUGklc6EFB0iMyw2GauRoB0H0M,3700
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 junifer/markers/reho/tests/test_reho_spheres.py,sha256=Gj-q2NajtYVRacvTsexxCyAQrpMWBQ-GbdXZpiDujIU,3803
 junifer/markers/temporal_snr/__init__.py,sha256=gyJPT19xuig-og0yuzZZeRC_zX4ondcLf-wNKFDaGvs,243
 junifer/markers/temporal_snr/temporal_snr_base.py,sha256=T5VGhiEPtTaUpF7pE5mTZAy_O9vtgdZMtthSLncI0P4,4024
 junifer/markers/temporal_snr/temporal_snr_parcels.py,sha256=OLkA5YZoPwc0kfTyxS7LTT-j1jBDiwLgHm8ulFHQs7o,3299
 junifer/markers/temporal_snr/temporal_snr_spheres.py,sha256=VoxVA_b48Ppf7P6cxYq05WKdiqK9YteIFPbCPfOOyTM,4007
 junifer/markers/temporal_snr/tests/test_temporal_snr_base.py,sha256=KRln5ibLTJJQ_f3pnioATfwyhK5htGc2o2J7CPcoyfs,426
-junifer/markers/temporal_snr/tests/test_temporal_snr_parcels.py,sha256=-JzuTd-Q44tmKhEZ0m6KKxB_W2H74Cv5u9uVkI6NLQE,1626
-junifer/markers/temporal_snr/tests/test_temporal_snr_spheres.py,sha256=s1Px_lJ9wva4FYEGzyHL983k3xBRMtV41jVVTZdXT8c,1865
-junifer/markers/tests/test_collection.py,sha256=WWX6UAFOvMCE8q21ZnYZ9k79bR9b-tTg2wuexEhYSTY,6873
-junifer/markers/tests/test_ets_rss.py,sha256=YZNvkqiytpKK5Iw1TQPAY_9zePuaMqvaeHBZWq0pDSA,2685
+junifer/markers/temporal_snr/tests/test_temporal_snr_parcels.py,sha256=a2EUGmAdyauFCxKnDxmr9vVguYLUfbxrzl8rExBnplk,1961
+junifer/markers/temporal_snr/tests/test_temporal_snr_spheres.py,sha256=VSc7CrN8iWsI7099REwlBIjeQ3BlmVdXWs56ZLfYGbI,2094
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 junifer/markers/tests/test_marker_utils.py,sha256=SR3ADWI3uGv4ozYqVu-rMZnJVqP6JnjLBgo6qUm16Wk,1478
 junifer/markers/tests/test_markers_base.py,sha256=cbuCeMmjyFMP1ea6J6XRsBQo8CivQ41ooABiT1Snj2k,3076
-junifer/markers/tests/test_parcel_aggregation.py,sha256=fEqag0j2Mf11-sMBnMq2CIMt_fGoXFqdS-Ju5OZERQs,22374
-junifer/markers/tests/test_sphere_aggregation.py,sha256=jqnn8pJH2EBpoZeS5DbbDNkRVK1Sdp2VlJkuePdkAZ4,7875
+junifer/markers/tests/test_parcel_aggregation.py,sha256=N0Nn42BF1apQkhntZikiU73b5clJkY2LThBv2YScJPg,26531
+junifer/markers/tests/test_sphere_aggregation.py,sha256=Xu2vrZvaK0oCZqjuJGiC6Tl8jSOFwVl75U4geclpy14,9747
 junifer/onthefly/__init__.py,sha256=GG_Z5NgnVNph6CLPtGFI2HE_OIuVTZ874BOq72mA-ps,160
 junifer/onthefly/read_transform.py,sha256=8ia2QktWpVhPDD20bKywuVHPU1Ys2Wyc_HvKyyRTcVo,4309
 junifer/onthefly/tests/test_read_transform.py,sha256=D2C3IpXQHdsJSF07v8rEwGntLGXjZOserlRhebJUAVM,4719
@@ -245,10 +248,10 @@ junifer/utils/logging.py,sha256=furcU3XIUpUvnpe4PEwzWWIWgmH4j2ZA4MQdvSGWjj0,9216
 junifer/utils/tests/test_fs.py,sha256=WQS7cKlKEZ742CIuiOYYpueeAhY9PqlastfDVpVVtvE,923
 junifer/utils/tests/test_helpers.py,sha256=k5qqfxK8dFyuewTJyR1Qn6-nFaYNuVr0ysc18bfPjyU,929
 junifer/utils/tests/test_logging.py,sha256=l8oo-AiBV7H6_IzlsNcj__cLeZBUvgIGoaMszD9VaJg,7754
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-junifer-0.0.4.dev694.dist-info/METADATA,sha256=jlAKgugESVQr_Hgr-fVh8WnInNOECaEIKqhi_IJx738,8235
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-junifer-0.0.4.dev694.dist-info/RECORD,,
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+junifer-0.0.4.dev781.dist-info/RECORD,,