junifer 0.0.4.dev565__py3-none-any.whl → 0.0.4.dev587__py3-none-any.whl

junifer/_version.py

@@ -12,5 +12,5 @@ __version__: str
 __version_tuple__: VERSION_TUPLE
 version_tuple: VERSION_TUPLE
 
-__version__ = version = '0.0.4.dev565'
-__version_tuple__ = version_tuple = (0, 0, 4, 'dev565')
+__version__ = version = '0.0.4.dev587'
+__version_tuple__ = version_tuple = (0, 0, 4, 'dev587')

junifer/api/tests/test_api_utils.py

@@ -44,6 +44,7 @@ def test_get_dependency_information_short() -> None:
         "ruamel.yaml",
         "httpx",
         "tqdm",
+        "templateflow",
     ]
     if int(pl.python_version_tuple()[1]) < 10:
         dependency_list.append("importlib_metadata")
@@ -68,6 +69,7 @@ def test_get_dependency_information_long() -> None:
         "ruamel.yaml",
         "httpx",
         "tqdm",
+        "templateflow",
     ]
     for key in dependency_list:
         assert key in dependency_information_keys

junifer/data/__init__.py

@@ -25,6 +25,6 @@ from .masks import (
     get_mask,
 )
 
-from .template_spaces import get_xfm
+from .template_spaces import get_template, get_xfm
 
 from . import utils

junifer/data/template_spaces.py

@@ -4,11 +4,15 @@
 # License: AGPL
 
 from pathlib import Path
-from typing import Union
+from typing import Any, Dict, Optional, Union
 
 import httpx
+import nibabel as nib
+import numpy as np
+from templateflow import api as tflow
 
 from ..utils import logger, raise_error
+from .utils import closest_resolution
 
 
 def get_xfm(
@@ -89,3 +93,71 @@ def get_xfm(
                     f.write(chunk)
 
     return xfm_file_path
+
+
+def get_template(
+    space: str,
+    target_data: Dict[str, Any],
+    extra_input: Optional[Dict[str, Any]] = None,
+) -> nib.Nifti1Image:
+    """Get template for the space, tailored for the target image.
+
+    Parameters
+    ----------
+    space : str
+        The name of the template space.
+    target_data : dict
+        The corresponding item of the data object for which the template space
+        will be loaded.
+    extra_input : dict, optional
+        The other fields in the data object. Useful for accessing other data
+        types (default None).
+
+    Returns
+    -------
+    Nifti1Image
+        The template image.
+
+    Raises
+    ------
+    ValueError
+        If ``space`` is invalid.
+    RuntimeError
+        If template in the required resolution is not found.
+
+    """
+    # Check for invalid space; early check to raise proper error
+    if space not in tflow.templates():
+        raise_error(f"Unknown template space: {space}")
+
+    # Get the min of the voxels sizes and use it as the resolution
+    target_img = target_data["data"]
+    resolution = np.min(target_img.header.get_zooms()[:3]).astype(int)
+
+    # Fetch available resolutions for the template
+    available_resolutions = [
+        int(min(val["zooms"]))
+        for val in tflow.get_metadata(space)["res"].values()
+    ]
+    # Use the closest resolution if desired resolution is not found
+    resolution = closest_resolution(resolution, available_resolutions)
+
+    logger.info(f"Downloading template {space} in resolution {resolution}")
+    # Retrieve template
+    try:
+        template_path = tflow.get(
+            space,
+            raise_empty=True,
+            resolution=resolution,
+            suffix="T1w",
+            desc=None,
+            extension="nii.gz",
+        )
+    except Exception:  # noqa: BLE001
+        raise_error(
+            f"Template {space} not found in the required resolution "
+            f"{resolution}",
+            klass=RuntimeError,
+        )
+    else:
+        return nib.load(template_path)  # type: ignore

junifer/data/tests/test_template_spaces.py

@@ -6,9 +6,12 @@
 import socket
 from pathlib import Path
 
+import nibabel as nib
 import pytest
 
-from junifer.data import get_xfm
+from junifer.data import get_template, get_xfm
+from junifer.datareader import DefaultDataReader
+from junifer.testing.datagrabbers import OasisVBMTestingDataGrabber
 
 
 @pytest.mark.skipif(
@@ -28,3 +31,39 @@ def test_get_xfm(tmp_path: Path) -> None:
         src="MNI152NLin6Asym", dst="MNI152NLin2009cAsym", xfms_dir=tmp_path
     )
     assert isinstance(xfm_path, Path)
+
+
+def test_get_template() -> None:
+    """Test tailored template image fetch."""
+    with OasisVBMTestingDataGrabber() as dg:
+        element = dg["sub-01"]
+        element_data = DefaultDataReader().fit_transform(element)
+        vbm_gm = element_data["VBM_GM"]
+        # Get tailored parcellation
+        tailored_template = get_template(
+            space=vbm_gm["space"], target_data=vbm_gm
+        )
+        assert isinstance(tailored_template, nib.Nifti1Image)
+
+
+def test_get_template_invalid_space() -> None:
+    """Test invalid space check for template fetch."""
+    with OasisVBMTestingDataGrabber() as dg:
+        element = dg["sub-01"]
+        element_data = DefaultDataReader().fit_transform(element)
+        vbm_gm = element_data["VBM_GM"]
+        # Get tailored parcellation
+        with pytest.raises(ValueError, match="Unknown template space:"):
+            _ = get_template(space="andromeda", target_data=vbm_gm)
+
+
+def test_get_template_closest_resolution() -> None:
+    """Test closest resolution check for template fetch."""
+    with OasisVBMTestingDataGrabber() as dg:
+        element = dg["sub-01"]
+        element_data = DefaultDataReader().fit_transform(element)
+        vbm_gm = element_data["VBM_GM"]
+        # Change header resolution to fetch closest resolution
+        element_data["VBM_GM"]["data"].header.set_zooms((3, 3, 3))
+        template = get_template(space=vbm_gm["space"], target_data=vbm_gm)
+        assert isinstance(template, nib.Nifti1Image)

junifer/data/utils.py

@@ -8,14 +8,14 @@ from ..utils.logging import logger
 
 
 def closest_resolution(
-    resolution: Optional[float],
+    resolution: Optional[Union[float, int]],
     valid_resolution: Union[List[float], List[int], np.ndarray],
 ) -> Union[float, int]:
     """Find the closest resolution.
 
     Parameters
     ----------
-    resolution : float, optional
+    resolution : float or int, optional
         The given resolution. If None, will return the highest resolution
         (default None).
     valid_resolution : list of float or int, or np.ndarray

junifer/preprocess/bold_warper.py

@@ -13,8 +13,13 @@ from typing import (
     Union,
 )
 
+import nibabel as nib
+from templateflow import api as tflow
+
 from ..api.decorators import register_preprocessor
-from ..utils import logger, raise_error
+from ..data import get_template, get_xfm
+from ..pipeline import WorkDirManager
+from ..utils import logger, raise_error, run_ext_cmd
 from .ants.ants_apply_transforms_warper import _AntsApplyTransformsWarper
 from .base import BasePreprocessor
 from .fsl.apply_warper import _ApplyWarper
@@ -27,7 +32,13 @@ class BOLDWarper(BasePreprocessor):
     Parameters
     ----------
     reference : str
-        The data type to use as reference for warping.
+        The data type to use as reference for warping, can be either a data
+        type like "T1w" or a template space like "MNI152NLin2009cAsym".
+
+    Raises
+    ------
+    ValueError
+        If ``reference`` is invalid.
 
     """
 
@@ -49,9 +60,15 @@ class BOLDWarper(BasePreprocessor):
     def __init__(self, reference: str) -> None:
         """Initialize the class."""
         self.ref = reference
-        super().__init__(
-            on="BOLD", required_data_types=["BOLD", self.ref, "Warp"]
-        )
+        # Initialize superclass based on reference
+        if self.ref == "T1w":
+            super().__init__(
+                on="BOLD", required_data_types=["BOLD", self.ref, "Warp"]
+            )
+        elif self.ref in tflow.templates():
+            super().__init__(on="BOLD", required_data_types=["BOLD"])
+        else:
+            raise_error(f"Unknown reference: {self.ref}")
 
     def get_valid_inputs(self) -> List[str]:
         """Get valid data types for input.
@@ -97,7 +114,8 @@ class BOLDWarper(BasePreprocessor):
             The BOLD input from the Junifer Data object.
         extra_input : dict, optional
             The other fields in the Junifer Data object. Must include the
-            ``Warp`` and ``ref`` value's keys.
+            ``Warp`` and ``ref`` value's keys if native space transformation is
+            needed.
 
         Returns
         -------
@@ -110,46 +128,117 @@ class BOLDWarper(BasePreprocessor):
         Raises
         ------
         ValueError
-            If ``extra_input`` is None.
+            If ``extra_input`` is None when transforming to native space
+            i.e., using "T1w" as reference.
         RuntimeError
-            If warp / transformation file extension is not ".mat" or ".h5".
+            If warp / transformation file extension is not ".mat" or ".h5"
+            when transforming to native space or
+            if the BOLD data is in the correct space and does not require
+            warping.
 
         """
-        logger.debug("Warping BOLD using BOLDWarper")
-        # Check for extra inputs
-        if extra_input is None:
-            raise_error(
-                f"No extra input provided, requires `Warp` and `{self.ref}` "
-                "data types in particular."
-            )
-        # Check for warp file type to use correct tool
-        warp_file_ext = extra_input["Warp"]["path"].suffix
-        if warp_file_ext == ".mat":
-            logger.debug("Using FSL with BOLDWarper")
-            # Initialize ApplyWarper for computation
-            apply_warper = _ApplyWarper(reference=self.ref, on="BOLD")
-            # Replace original BOLD data with warped BOLD data
-            _, input = apply_warper.preprocess(
-                input=input,
-                extra_input=extra_input,
-            )
-        elif warp_file_ext == ".h5":
-            logger.debug("Using ANTs with BOLDWarper")
-            # Initialize AntsApplyTransformsWarper for computation
-            ants_apply_transforms_warper = _AntsApplyTransformsWarper(
-                reference=self.ref, on="BOLD"
-            )
-            # Replace original BOLD data with warped BOLD data
-            _, input = ants_apply_transforms_warper.preprocess(
-                input=input,
-                extra_input=extra_input,
-            )
+        logger.info(f"Warping BOLD to {self.ref} space using BOLDWarper")
+        # Transform to native space
+        if self.ref == "T1w":
+            # Check for extra inputs
+            if extra_input is None:
+                raise_error(
+                    "No extra input provided, requires `Warp` and "
+                    f"`{self.ref}` data types in particular."
+                )
+            # Check for warp file type to use correct tool
+            warp_file_ext = extra_input["Warp"]["path"].suffix
+            if warp_file_ext == ".mat":
+                logger.debug("Using FSL with BOLDWarper")
+                # Initialize ApplyWarper for computation
+                apply_warper = _ApplyWarper(reference=self.ref, on="BOLD")
+                # Replace original BOLD data with warped BOLD data
+                _, input = apply_warper.preprocess(
+                    input=input,
+                    extra_input=extra_input,
+                )
+            elif warp_file_ext == ".h5":
+                logger.debug("Using ANTs with BOLDWarper")
+                # Initialize AntsApplyTransformsWarper for computation
+                ants_apply_transforms_warper = _AntsApplyTransformsWarper(
+                    reference=self.ref, on="BOLD"
+                )
+                # Replace original BOLD data with warped BOLD data
+                _, input = ants_apply_transforms_warper.preprocess(
+                    input=input,
+                    extra_input=extra_input,
+                )
+            else:
+                raise_error(
+                    msg=(
+                        "Unknown warp / transformation file extension: "
+                        f"{warp_file_ext}"
+                    ),
+                    klass=RuntimeError,
+                )
+        # Transform to template space
         else:
-            raise_error(
-                msg=(
-                    "Unknown warp / transformation file extension: "
-                    f"{warp_file_ext}"
-                ),
-                klass=RuntimeError,
-            )
+            # Check pre-requirements for space manipulation
+            if self.ref == input["space"]:
+                raise_error(
+                    (
+                        f"Skipped warping as the BOLD data is in {self.ref} "
+                        "space which would mean that you can remove the "
+                        "BOLDWarper from the preprocess step."
+                    ),
+                    klass=RuntimeError,
+                )
+            else:
+                # Get xfm file
+                xfm_file_path = get_xfm(src=input["space"], dst=self.ref)
+                # Get template space image
+                template_space_img = get_template(
+                    space=self.ref,
+                    target_data=input,
+                    extra_input=None,
+                )
+
+                # Create component-scoped tempdir
+                tempdir = WorkDirManager().get_tempdir(prefix="boldwarper")
+                # Create element-scoped tempdir so that warped BOLD is
+                # available later as nibabel stores file path reference for
+                # loading on computation
+                element_tempdir = WorkDirManager().get_element_tempdir(
+                    prefix="boldwarper"
+                )
+
+                # Save template
+                template_space_img_path = tempdir / f"{self.ref}_T1w.nii.gz"
+                nib.save(template_space_img, template_space_img_path)
+
+                # Create a tempfile for warped output
+                warped_bold_path = (
+                    element_tempdir
+                    / f"bold_warped_from_{input['space']}_to_{self.ref}.nii.gz"
+                )
+
+                logger.debug(
+                    f"Using ANTs to warp BOLD "
+                    f"from {input['space']} to {self.ref}"
+                )
+                # Set antsApplyTransforms command
+                apply_transforms_cmd = [
+                    "antsApplyTransforms",
+                    "-d 3",
+                    "-e 3",
+                    "-n LanczosWindowedSinc",
+                    f"-i {input['path'].resolve()}",
+                    f"-r {template_space_img_path.resolve()}",
+                    f"-t {xfm_file_path.resolve()}",
+                    f"-o {warped_bold_path.resolve()}",
+                ]
+                # Call antsApplyTransforms
+                run_ext_cmd(
+                    name="antsApplyTransforms", cmd=apply_transforms_cmd
+                )
+
+                # Modify target data
+                input["data"] = nib.load(warped_bold_path)
+                input["space"] = self.ref
+
         return "BOLD", input

junifer/preprocess/tests/test_bold_warper.py

@@ -7,6 +7,7 @@ import socket
 from typing import TYPE_CHECKING, List, Tuple
 
 import pytest
+from numpy.testing import assert_array_equal, assert_raises
 
 from junifer.datagrabber import DataladHCP1200, DMCC13Benchmark
 from junifer.datareader import DefaultDataReader
@@ -83,7 +84,7 @@ def test_BOLDWarper_get_output_type(input_: List[str]) -> None:
     socket.gethostname() != "juseless",
     reason="only for juseless",
 )
-def test_BOLDWarper_preprocess(
+def test_BOLDWarper_preprocess_to_native(
     datagrabber: "BaseDataGrabber", element: Tuple[str, ...]
 ) -> None:
     """Test BOLDWarper preprocess.
@@ -106,3 +107,70 @@ def test_BOLDWarper_preprocess(
         )
         assert data_type == "BOLD"
         assert isinstance(data, dict)
+
+
+@pytest.mark.parametrize(
+    "datagrabber, element, space",
+    [
+        [
+            DMCC13Benchmark(
+                types=["BOLD"],
+                sessions=["wave1bas"],
+                tasks=["Rest"],
+                phase_encodings=["AP"],
+                runs=["1"],
+                native_t1w=False,
+            ),
+            ("f9057kp", "wave1bas", "Rest", "AP", "1"),
+            "MNI152NLin2009aAsym",
+        ],
+        [
+            DMCC13Benchmark(
+                types=["BOLD"],
+                sessions=["wave1bas"],
+                tasks=["Rest"],
+                phase_encodings=["AP"],
+                runs=["1"],
+                native_t1w=False,
+            ),
+            ("f9057kp", "wave1bas", "Rest", "AP", "1"),
+            "MNI152NLin6Asym",
+        ],
+    ],
+)
+@pytest.mark.skipif(
+    _check_ants() is False, reason="requires ANTs to be in PATH"
+)
+@pytest.mark.skipif(
+    socket.gethostname() != "juseless",
+    reason="only for juseless",
+)
+def test_BOLDWarper_preprocess_to_multi_mni(
+    datagrabber: "BaseDataGrabber", element: Tuple[str, ...], space: str
+) -> None:
+    """Test BOLDWarper preprocess.
+
+    Parameters
+    ----------
+    datagrabber : DataGrabber-like object
+        The parametrized DataGrabber objects.
+    element : tuple of str
+        The parametrized elements.
+    space : str
+        The parametrized template space to transform to.
+
+    """
+    with datagrabber as dg:
+        # Read data
+        element_data = DefaultDataReader().fit_transform(dg[element])
+        pre_xfm_data = element_data["BOLD"]["data"].get_fdata().copy()
+        # Preprocess data
+        data_type, data = BOLDWarper(reference=space).preprocess(
+            input=element_data["BOLD"],
+            extra_input=element_data,
+        )
+        assert data_type == "BOLD"
+        assert isinstance(data, dict)
+        assert data["space"] == space
+        with assert_raises(AssertionError):
+            assert_array_equal(pre_xfm_data, data["data"])

{junifer-0.0.4.dev565.dist-info → junifer-0.0.4.dev587.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: junifer
-Version: 0.0.4.dev565
+Version: 0.0.4.dev587
 Summary: JUelich NeuroImaging FEature extractoR
 Author-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Synchon Mandal <s.mandal@fz-juelich.de>
 Maintainer-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Synchon Mandal <s.mandal@fz-juelich.de>
@@ -39,6 +39,7 @@ Requires-Dist: ruamel.yaml <0.18,>=0.17
 Requires-Dist: h5py <3.10,>=3.8.0
 Requires-Dist: httpx[http2] ==0.26.0
 Requires-Dist: tqdm ==4.66.1
+Requires-Dist: templateflow >=23.0.0
 Requires-Dist: importlib-metadata ; python_version < "3.10"
 Provides-Extra: all
 Requires-Dist: bctpy ==0.6.0 ; extra == 'all'

{junifer-0.0.4.dev565.dist-info → junifer-0.0.4.dev587.dist-info}/RECORD

@@ -1,5 +1,5 @@
 junifer/__init__.py,sha256=x1UR2jUcrUdm2HNl-3Qvyi4UUrU6ms5qm2qcmNY7zZk,391
-junifer/_version.py,sha256=ONu2E1FwZ-7bgzlkyRcG3seaZVfnneuHwnu-2ZXZQco,428
+junifer/_version.py,sha256=jRCAqJ8XX2RVzioqqJ2HfV12Yo7uICU0v_bmiNBLdQs,428
 junifer/stats.py,sha256=sU5IZ2qFZWbzgSutQS_z42miIVItpSGmQYBn6KkD5fA,6162
 junifer/api/__init__.py,sha256=YILu9M7SC0Ri4CVd90fELH2OnK_gvCYAXCoqBNCFE8E,257
 junifer/api/cli.py,sha256=T6FTW3vDRlsdkSYerbQD7Q05uA9bV6f8oHvK1jxGUa8,12882
@@ -22,7 +22,7 @@ junifer/api/res/fsl/flirt,sha256=tSjiUco8ui8AbHD7mTzChEwbR0Rf_4iJTgzYTPF_WuQ,42
 junifer/api/res/fsl/img2imgcoord,sha256=Zmaw3oJYrEltcXiPyEubXry9ppAq3SND52tdDWGgeZk,49
 junifer/api/res/fsl/run_fsl_docker.sh,sha256=mRLtZo0OgDwleoee2MG6rYI37HVuGNk9zOADwcl97RA,1122
 junifer/api/res/fsl/std2imgcoord,sha256=-X5wRH6XMl0yqnTACJX6MFhO8DFOEWg42MHRxGvimXg,49
-junifer/api/tests/test_api_utils.py,sha256=Gt_rdWXiZnoQUpYiEjqFfiQJqa-DEId8usyZikih3vk,2591
+junifer/api/tests/test_api_utils.py,sha256=OG7xZyncYAfAIzrnC_4gtpVgpyfIwpr3LjtPqSM1F54,2639
 junifer/api/tests/test_cli.py,sha256=qKWkAf-A1DeDwCtrOaCrQ5bmuUYcLWeRbGk2K95OMHQ,5717
 junifer/api/tests/test_functions.py,sha256=0XHxCC7-jfVqV7m-R-eGiEwZPjEoBzdS0zperVIyNow,24659
 junifer/api/tests/test_parser.py,sha256=eUz2JPVb0_cxvoeI1O_C5PMNs5v_lDzGsN6fV1VW5Eg,6109
@@ -41,12 +41,12 @@ junifer/configs/juseless/datagrabbers/tests/test_camcan_vbm.py,sha256=o0dzptS97p
 junifer/configs/juseless/datagrabbers/tests/test_ixi_vbm.py,sha256=8jxpNZelXwpJGvA5LOfpso2X8yt1chvERAYmv76hS_g,1252
 junifer/configs/juseless/datagrabbers/tests/test_ucla.py,sha256=e-jdvcZ9B0mka6_573JJU_cGwSaUV54U8X_n0UadtJY,3351
 junifer/configs/juseless/datagrabbers/tests/test_ukb_vbm.py,sha256=b9hjc1mgO--PSRC3id2EzzfE2yWNsuZ2UI47a6sfGZU,1025
-junifer/data/__init__.py,sha256=zInNlHWTPT_ij1i8rQ4dj17pq1Gt1su-iQVHDl3e9L8,588
+junifer/data/__init__.py,sha256=1E6JtzpnjjA0IutkJkarEik9NhCP9PPI6K0-37XDZVg,602
 junifer/data/coordinates.py,sha256=GcL95_wzW5t4iNNmRbgD6IwwH-ERMChJK3kWfZ3ORDc,12701
 junifer/data/masks.py,sha256=81v3GhAf9lc_CobV9f6n_vMK1jWZCbeANmopa02XZOQ,17744
 junifer/data/parcellations.py,sha256=FB-cx4ZKl9BhsOEl6PCsWRGAL0emjTJKC0KMKqARL18,58205
-junifer/data/template_spaces.py,sha256=AXyeCyVym92BxJwCgCzoH8LsKaKTeS1RE97h9JcwQmA,2697
-junifer/data/utils.py,sha256=wZfovfhiP3Iq5LWCvsIeYmvmlO6heQ-6AeUe3b8ohFY,1276
+junifer/data/template_spaces.py,sha256=fHuihkPCq816rhvI72Us57cSnEPqDf7gWpVZIhOkoMY,4862
+junifer/data/utils.py,sha256=Jmbc7SLzy4nLP_zkWv_aJzb1MZ27tutJ98ifsECCamM,1295
 junifer/data/VOIs/meta/CogAC_VOIs.txt,sha256=Sr5_E712OLdeQRyUcDNM0wLBvZIyO6gc9Q7KkyJHX1A,398
 junifer/data/VOIs/meta/CogAR_VOIs.txt,sha256=t3NLwEVUZTPP34p15SaB3UInLrQyK-7Qc4iLBuQlZu8,189
 junifer/data/VOIs/meta/DMNBuckner_VOIs.txt,sha256=2trjgKF00PnCxTtfCXYmr-J7P_Jl-iX_qUocmzOR1nk,86
@@ -72,7 +72,7 @@ junifer/data/tests/test_coordinates.py,sha256=BNkz9qFbnwAI0oVlIm_XrT-z4Vsia_rMtM
 junifer/data/tests/test_data_utils.py,sha256=_DaiC8K79gs9HFHxr-udNeE2YTM6JA0-1i-K2cqK9qA,1087
 junifer/data/tests/test_masks.py,sha256=wZ7nsY55on6LpJdRm7VXp1qqQQlENmSK6bNOgiMTE4M,14572
 junifer/data/tests/test_parcellations.py,sha256=3Tk0bU4xT9TJfdrDWcUMq6ns-IPJUpZzkiR-PEbmM6M,36212
-junifer/data/tests/test_template_spaces.py,sha256=AHY8SwFnJeQSNNU_tUo1exM7ko6qztOfxzeIbxApLtI,621
+junifer/data/tests/test_template_spaces.py,sha256=EDsGYBAwjqjOANDNssXaaXPkNv9P658JRtCN2vUulf8,2258
 junifer/datagrabber/__init__.py,sha256=pZHJIY8nAlbVngsyRScE6a6GKbytiwjJB7SdJNqIbl4,680
 junifer/datagrabber/base.py,sha256=clErdDX5jz8LTjwPTQPCv3jfELCJ2vObg7ks8imAx8Y,6224
 junifer/datagrabber/datalad_base.py,sha256=dDaBiIePPP6-G4ycgBMxTcXxs4vkg-yDS3OBURK4VGs,10731
@@ -193,7 +193,7 @@ junifer/pipeline/tests/test_update_meta_mixin.py,sha256=UeWwpUi-Q5WVd36Fgfn_utXp
 junifer/pipeline/tests/test_workdir_manager.py,sha256=E1WY4C-GDsx2c49sePqr1WR_Y3nZ1kiRn4Veu506uTs,2801
 junifer/preprocess/__init__.py,sha256=-3exohZnw-gJ-MjVM63WcXzBW1mbSetEVozcDfs5etc,342
 junifer/preprocess/base.py,sha256=syiNqI8pUjoGyShZSjs_RTsd5VHhwoqzIfPfFstr4f4,6230
-junifer/preprocess/bold_warper.py,sha256=KOYCPCTJE92yI1juXK-3yl7VUxUhbzqqQxJrCYgk-0E,4572
+junifer/preprocess/bold_warper.py,sha256=d99ZraDBXXd0UXxJJ3s-FTy76GY_AIhzBbNCzNN0QEY,8314
 junifer/preprocess/ants/__init__.py,sha256=Uobmbhh6_gOowkF2hQNSQOh3AYeaXzarBXEcLJzhERE,112
 junifer/preprocess/ants/ants_apply_transforms_warper.py,sha256=V3y9EIGdIeJhJpnEVi123fHTK3R0sv_-OmWY7R_DC1M,6627
 junifer/preprocess/ants/tests/test_ants_apply_transforms_warper.py,sha256=ibLLISss0o0wg3lqpLhL1oO7MfU_bZF5PBqY3OOd9sg,3737
@@ -203,7 +203,7 @@ junifer/preprocess/confounds/tests/test_fmriprep_confound_remover.py,sha256=OKAC
 junifer/preprocess/fsl/__init__.py,sha256=DerGFQ-dIuX5PT9a_BH6QkIXkJZVymjYy-woXF7tYGc,111
 junifer/preprocess/fsl/apply_warper.py,sha256=_HU1-63A32cSQw9eNdgpKN52BFivn6cZaDa0_at-4UY,6215
 junifer/preprocess/fsl/tests/test_apply_warper.py,sha256=b--MMPlaJw284gJWw-QV8rz6Rb2zmcBjYaY-cb6-uNU,3024
-junifer/preprocess/tests/test_bold_warper.py,sha256=X4rs-IBu_Oe9wF81Xlh6ih9BCu8SUyDm64lXKk-l9Q8,2831
+junifer/preprocess/tests/test_bold_warper.py,sha256=oQooJt4yC09LzXJuFDL7ytlYMuhcf4SeCAWKGdVLJdQ,4890
 junifer/preprocess/tests/test_preprocess_base.py,sha256=UHuH_YOK7AU3AfApWqgB6YLG-J669BgztuxNSWCtmtI,2560
 junifer/storage/__init__.py,sha256=QlzBw9UrRhmg_f7zQVas9h313u3sfZIBicA3_0Skm4M,337
 junifer/storage/base.py,sha256=UxDvj81gSmqqHspbSs1X_i9HvW5wXysDippI7HWM7aM,9654
@@ -234,10 +234,10 @@ junifer/utils/logging.py,sha256=T0HgiCI6cS2tp9nbI4cM3nVzMMjiVzgoxuyo5Y1rCyY,9124
 junifer/utils/tests/test_fs.py,sha256=WQS7cKlKEZ742CIuiOYYpueeAhY9PqlastfDVpVVtvE,923
 junifer/utils/tests/test_helpers.py,sha256=k5qqfxK8dFyuewTJyR1Qn6-nFaYNuVr0ysc18bfPjyU,929
 junifer/utils/tests/test_logging.py,sha256=l8oo-AiBV7H6_IzlsNcj__cLeZBUvgIGoaMszD9VaJg,7754
-junifer-0.0.4.dev565.dist-info/AUTHORS.rst,sha256=rmULKpchpSol4ExWFdm-qu4fkpSZPYqIESVJBZtGb6E,163
-junifer-0.0.4.dev565.dist-info/LICENSE.md,sha256=MqCnOBu8uXsEOzRZWh9EBVfVz-kE9NkXcLCrtGXo2yU,34354
-junifer-0.0.4.dev565.dist-info/METADATA,sha256=soYFwdolb0wGSziTYpzn-52aoWjoCk6Jq_rHiIxLQLo,8091
-junifer-0.0.4.dev565.dist-info/WHEEL,sha256=oiQVh_5PnQM0E3gPdiz09WCNmwiHDMaGer_elqB3coM,92
-junifer-0.0.4.dev565.dist-info/entry_points.txt,sha256=DxFvKq0pOqRunAK0FxwJcoDfV1-dZvsFDpD5HRqSDhw,48
-junifer-0.0.4.dev565.dist-info/top_level.txt,sha256=4bAq1R2QFQ4b3hohjys2JBvxrl0GKk5LNFzYvz9VGcA,8
-junifer-0.0.4.dev565.dist-info/RECORD,,
+junifer-0.0.4.dev587.dist-info/AUTHORS.rst,sha256=rmULKpchpSol4ExWFdm-qu4fkpSZPYqIESVJBZtGb6E,163
+junifer-0.0.4.dev587.dist-info/LICENSE.md,sha256=MqCnOBu8uXsEOzRZWh9EBVfVz-kE9NkXcLCrtGXo2yU,34354
+junifer-0.0.4.dev587.dist-info/METADATA,sha256=oexdrhEQvCUgBCtdR2W2l0k5IDmyNQzsxMw9P5IfolY,8128
+junifer-0.0.4.dev587.dist-info/WHEEL,sha256=oiQVh_5PnQM0E3gPdiz09WCNmwiHDMaGer_elqB3coM,92
+junifer-0.0.4.dev587.dist-info/entry_points.txt,sha256=DxFvKq0pOqRunAK0FxwJcoDfV1-dZvsFDpD5HRqSDhw,48
+junifer-0.0.4.dev587.dist-info/top_level.txt,sha256=4bAq1R2QFQ4b3hohjys2JBvxrl0GKk5LNFzYvz9VGcA,8
+junifer-0.0.4.dev587.dist-info/RECORD,,