junifer 0.0.3.dev188__py3-none-any.whl → 0.0.4__py3-none-any.whl

{junifer-0.0.3.dev188.dist-info → junifer-0.0.4.dist-info}/METADATA

@@ -1,13 +1,14 @@
 Metadata-Version: 2.1
 Name: junifer
-Version: 0.0.3.dev188
+Version: 0.0.4
 Summary: JUelich NeuroImaging FEature extractoR
 Author-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Synchon Mandal <s.mandal@fz-juelich.de>
 Maintainer-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Synchon Mandal <s.mandal@fz-juelich.de>
 License: AGPL-3.0-only
-Project-URL: homepage, https://juaml.github.io/junifer
-Project-URL: documentation, https://juaml.github.io/junifer
-Project-URL: repository, https://github.com/juaml/junifer
+Project-URL: Changelog, https://juaml.github.io/junifer/main/whats_new.html
+Project-URL: Documentation, https://juaml.github.io/junifer
+Project-URL: Homepage, https://juaml.github.io/junifer
+Project-URL: Source, https://github.com/juaml/junifer
 Keywords: neuroimaging
 Classifier: Development Status :: 4 - Beta
 Classifier: Intended Audience :: Science/Research
@@ -22,35 +23,48 @@ Classifier: Programming Language :: Python :: 3.8
 Classifier: Programming Language :: Python :: 3.9
 Classifier: Programming Language :: Python :: 3.10
 Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
 Requires-Python: >=3.8
 Description-Content-Type: text/markdown
 License-File: LICENSE.md
 License-File: AUTHORS.rst
-Requires-Dist: click (<8.2,>=8.1.3)
-Requires-Dist: numpy (<1.26,>=1.24)
-Requires-Dist: datalad (<0.19,>=0.15.4)
-Requires-Dist: pandas (<1.6,>=1.4.0)
-Requires-Dist: nibabel (<4.1,>=3.2.0)
-Requires-Dist: nilearn (<=0.10.0,>=0.9.0)
-Requires-Dist: sqlalchemy (<=1.5.0,>=1.4.27)
-Requires-Dist: ruamel.yaml (<0.18,>=0.17)
-Requires-Dist: h5py (<3.9,>=3.8.0)
+Requires-Dist: click <8.2,>=8.1.3
+Requires-Dist: numpy <1.27,>=1.24
+Requires-Dist: scipy <=1.11.4,>=1.9.0
+Requires-Dist: datalad <0.20,>=0.15.4
+Requires-Dist: pandas <2.2,>=1.4.0
+Requires-Dist: nibabel <5.11,>=3.2.0
+Requires-Dist: nilearn <=0.10.2,>=0.9.0
+Requires-Dist: sqlalchemy <=2.1.0,>=1.4.27
+Requires-Dist: ruamel.yaml <0.18,>=0.17
+Requires-Dist: h5py >=3.10
+Requires-Dist: httpx[http2] ==0.26.0
+Requires-Dist: tqdm ==4.66.1
+Requires-Dist: templateflow >=23.0.0
 Requires-Dist: importlib-metadata ; python_version < "3.10"
+Requires-Dist: looseversion ==1.3.0 ; python_version >= "3.12"
+Provides-Extra: all
+Requires-Dist: bctpy ==0.6.0 ; extra == 'all'
+Requires-Dist: neurokit2 >=0.1.7 ; extra == 'all'
+Provides-Extra: bct
+Requires-Dist: bctpy ==0.6.0 ; extra == 'bct'
 Provides-Extra: dev
 Requires-Dist: tox ; extra == 'dev'
 Requires-Dist: pre-commit ; extra == 'dev'
 Provides-Extra: docs
-Requires-Dist: seaborn (<0.12,>=0.11.2) ; extra == 'docs'
-Requires-Dist: Sphinx (<5.4,>=5.3.0) ; extra == 'docs'
-Requires-Dist: sphinx-gallery (<0.12,>=0.11.0) ; extra == 'docs'
-Requires-Dist: furo (<2023.0.0,>=2022.9.29) ; extra == 'docs'
-Requires-Dist: numpydoc (<1.6,>=1.5.0) ; extra == 'docs'
-Requires-Dist: julearn (==0.3.0) ; extra == 'docs'
-Requires-Dist: sphinx-copybutton (==0.5.1) ; extra == 'docs'
-Requires-Dist: towncrier (==22.12.0) ; extra == 'docs'
-Requires-Dist: sphinxcontrib-mermaid (==0.8.1) ; extra == 'docs'
+Requires-Dist: seaborn <0.13,>=0.11.2 ; extra == 'docs'
+Requires-Dist: sphinx <7.3,>=5.3.0 ; extra == 'docs'
+Requires-Dist: sphinx-gallery <0.15.0,>=0.11.0 ; extra == 'docs'
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+Requires-Dist: numpydoc <1.6,>=1.5.0 ; extra == 'docs'
+Requires-Dist: julearn <0.4,>=0.3.0 ; extra == 'docs'
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+Requires-Dist: sphinxcontrib-mermaid <0.10,>=0.8.1 ; extra == 'docs'
+Provides-Extra: neurokit2
+Requires-Dist: neurokit2 >=0.1.7 ; extra == 'neurokit2'
 Provides-Extra: onthefly
-Requires-Dist: bctpy (==0.6.0) ; extra == 'onthefly'
+Requires-Dist: bctpy ==0.6.0 ; extra == 'onthefly'
 
 ![Junifer logo](docs/images/junifer_logo.png "junifer logo")
 
@@ -65,10 +79,12 @@ Requires-Dist: bctpy (==0.6.0) ; extra == 'onthefly'
 [![Code style: black](https://img.shields.io/badge/code%20style-black-000000.svg?style=flat-square)](https://github.com/psf/black)
 [![Ruff](https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/charliermarsh/ruff/main/assets/badge/v2.json)](https://github.com/charliermarsh/ruff)
 [![pre-commit](https://img.shields.io/badge/pre--commit-enabled-brightgreen?logo=pre-commit)](https://github.com/pre-commit/pre-commit)
+[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.8176570.svg)](https://doi.org/10.5281/zenodo.8176570)
+[![FAIR checklist badge](https://fairsoftwarechecklist.net/badge.svg)](https://fairsoftwarechecklist.net/v0.2?f=31&a=32113&i=32322&r=133)
 
 ## About
 
-junifer is a data handling and feature extraction library targeted towards neuroimaging data specifically functional MRI data.
+`junifer` is a data handling and feature extraction library targeted towards neuroimaging data specifically functional MRI data.
 
 It is currently being developed and maintained at the [Applied Machine Learning](https://www.fz-juelich.de/en/inm/inm-7/research-groups/applied-machine-learning-aml) group at [Forschungszentrum Juelich](https://www.fz-juelich.de/en), Germany. Although the library is designed for people working at [Institute of Neuroscience and Medicine - Brain and Behaviour (INM-7)](https://www.fz-juelich.de/en/inm/inm-7), it is designed to be as modular as possible thus enabling others to extend it easily.
 
@@ -91,7 +107,7 @@ The documentation is available at [https://juaml.github.io/junifer](https://juam
   * `preprocess`: Preprocessing module.
   * `storage`: Storage module.
   * `testing`: Testing components module.
-  * `utils`: Utilities module (e.g. logging)
+  * `utils`: Utilities module (e.g. logging).
 
 ## Installation
 
@@ -107,14 +123,29 @@ You can also install via `conda`, like so:
 conda install -c conda-forge junifer
 ```
 
+### Optional dependencies
+
+`junifer` supports a few optional dependencies to enable certain features. You can
+install them by specifying a comma separated list within square brackets, like so:
+
+```
+pip install "junifer[bct,dev]"
+```
+
+* `bct` installs [bctpy](https://github.com/aestrivex/bctpy) to enable use of `onthefly` module.
+* `neurokit2` installs [neurokit2](https://github.com/neuropsychology/NeuroKit) to enable use of [complexity markers](https://juaml.github.io/junifer/main/api/markers.html#module-junifer.markers.complexity).
+* `all` includes all of the above.
+* `dev` installs packages needed for development.
+* `docs` installs packages needed for building documentation.
+
 ## Citation
 
-If you use junifer in a scientific publication, we would appreciate if you cite our work. Currently, we do not have a publication, so feel free to use the project [URL](https://juaml.github.io/junifer).
+If you use `junifer` in a scientific publication, we would appreciate if you cite our work. Currently, we do not have a publication, so feel free to use the project's [Zenodo URL](https://doi.org/10.5281/zenodo.8176569).
 
 ## Funding
 
 We thank the [Helmholtz Imaging Platform](https://helmholtz-imaging.de/) and
-[SMHB](https://www.fz-juelich.de/en/smhb) for supporting development of Junifer.
+[SMHB](https://www.fz-juelich.de/en/smhb) for supporting development of `junifer`.
 (The funding sources had no role in the design, implementation and evaluation of the pipeline.)
 
 ## Contribution
@@ -126,7 +157,7 @@ Contributions are welcome and greatly appreciated. Please read the [guidelines](
 junifer is released under the AGPL v3 license:
 
 junifer, FZJuelich AML neuroimaging feature extraction library.
-Copyright (C) 2022, authors of junifer.
+Copyright (C) 2023, authors of junifer.
 
 This program is free software: you can redistribute it and/or modify
 it under the terms of the GNU Affero General Public License as published by

junifer-0.0.4.dist-info/RECORD

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{junifer-0.0.3.dev188.dist-info → junifer-0.0.4.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: bdist_wheel (0.41.0)
+Generator: bdist_wheel (0.43.0)
 Root-Is-Purelib: true
 Tag: py3-none-any