junifer 0.0.3.dev186__py3-none-any.whl → 0.0.4.dev8__py3-none-any.whl

junifer/_version.py

@@ -1,4 +1,4 @@
 # file generated by setuptools_scm
 # don't change, don't track in version control
-__version__ = version = '0.0.3.dev186'
-__version_tuple__ = version_tuple = (0, 0, 3, 'dev186')
+__version__ = version = '0.0.4.dev8'
+__version_tuple__ = version_tuple = (0, 0, 4, 'dev8')

junifer/data/masks.py

@@ -213,7 +213,7 @@ def get_mask(
     all_masks = []
     for t_mask in true_masks:
         if isinstance(t_mask, dict):
-            mask_name = list(t_mask.keys())[0]
+            mask_name = next(iter(t_mask.keys()))
             mask_params = t_mask[mask_name]
         else:
             mask_name = t_mask

junifer/data/tests/test_masks.py

@@ -411,7 +411,7 @@ def test_get_mask_multiple(
         computed = get_mask(masks=junifer_masks, target_data=input["BOLD"])
 
         masks_names = [
-            list(x.keys())[0] if isinstance(x, dict) else x for x in masks
+            next(iter(x.keys())) if isinstance(x, dict) else x for x in masks
         ]
 
         mask_funcs = [

junifer/markers/tests/test_collection.py

@@ -197,7 +197,7 @@ def test_marker_collection_storage(tmp_path: Path) -> None:
 
     features = storage.list_features()
     assert len(features) == 3
-    feature_md5 = list(features.keys())[0]
+    feature_md5 = next(iter(features.keys()))
     t_feature = storage.read_df(feature_md5=feature_md5)
     fname = "gmd_schaefer100x7_mean"
     t_data = out[fname]["VBM_GM"]["data"]  # type: ignore

junifer/storage/pandas_base.py

@@ -114,7 +114,8 @@ class PandasBaseFeatureStorage(BaseFeatureStorage):
         if len(elem_idx) == 1:
             # Create normal index for vector
             index = pd.Index(
-                data=list(elem_idx.values())[0], name=list(elem_idx.keys())[0]
+                data=next(iter(elem_idx.values())),
+                name=next(iter(elem_idx.keys())),
             )
         else:
             # Create multiindex for timeseries

junifer/storage/tests/test_hdf5.py

@@ -175,7 +175,7 @@ def test_store_metadata_and_list_features(tmp_path: Path) -> None:
     # List the stored features
     features = storage.list_features()
     # Get the first MD5
-    feature_md5 = list(features.keys())[0]
+    feature_md5 = next(iter(features.keys()))
     # Check the MD5
     assert meta_md5 == feature_md5
 

junifer/storage/tests/test_sqlite.py

@@ -335,7 +335,7 @@ def test_store_df_and_read_df(tmp_path: Path) -> None:
     with pytest.raises(ValueError, match="Only one"):
         storage.read_df(feature_name="wrong_name", feature_md5="wrong_md5")
     # Get MD5 hash of features
-    feature_md5 = list(features.keys())[0]
+    feature_md5 = next(iter(features.keys()))
     assert "feature_md5" == feature_md5
     # Check for key
     assert "BOLD_markername" == features[feature_md5]["name"]
@@ -373,7 +373,7 @@ def test_store_metadata(tmp_path: Path) -> None:
         meta_md5=meta_md5, element=element_to_store, meta=meta_to_store
     )
     features = storage.list_features()
-    feature_md5 = list(features.keys())[0]
+    feature_md5 = next(iter(features.keys()))
     assert meta_md5 == feature_md5
 
 
@@ -474,7 +474,7 @@ def test_store_matrix(tmp_path: Path) -> None:
     stored_names = [f"{i}~{j}" for i in row_names for j in col_names]
 
     features = storage.list_features()
-    feature_md5 = list(features.keys())[0]
+    feature_md5 = next(iter(features.keys()))
     assert "BOLD_fc" == features[feature_md5]["name"]
 
     read_df = storage.read_df(feature_md5=feature_md5)
@@ -498,7 +498,7 @@ def test_store_matrix(tmp_path: Path) -> None:
         for j in range(data.shape[1])
     ]
     features = storage.list_features()
-    feature_md5 = list(features.keys())[0]
+    feature_md5 = next(iter(features.keys()))
     assert "BOLD_fc" == features[feature_md5]["name"]
     read_df = storage.read_df(feature_md5=feature_md5)
     assert list(read_df.columns) == stored_names
@@ -563,7 +563,7 @@ def test_store_matrix(tmp_path: Path) -> None:
     ]
 
     features = storage.list_features()
-    feature_md5 = list(features.keys())[0]
+    feature_md5 = next(iter(features.keys()))
     assert "BOLD_fc" == features[feature_md5]["name"]
     read_df = storage.read_df(feature_md5=feature_md5)
     assert list(read_df.columns) == stored_names
@@ -595,7 +595,7 @@ def test_store_matrix(tmp_path: Path) -> None:
     ]
 
     features = storage.list_features()
-    feature_md5 = list(features.keys())[0]
+    feature_md5 = next(iter(features.keys()))
     assert "BOLD_fc" == features[feature_md5]["name"]
     read_df = storage.read_df(feature_md5=feature_md5)
     assert list(read_df.columns) == stored_names
@@ -632,7 +632,7 @@ def test_store_matrix(tmp_path: Path) -> None:
     ]
 
     features = storage.list_features()
-    feature_md5 = list(features.keys())[0]
+    feature_md5 = next(iter(features.keys()))
     assert "BOLD_fc" == features[feature_md5]["name"]
     read_df = storage.read_df(feature_md5=feature_md5)
     assert list(read_df.columns) == stored_names
@@ -663,7 +663,7 @@ def test_store_matrix(tmp_path: Path) -> None:
     ]
 
     features = storage.list_features()
-    feature_md5 = list(features.keys())[0]
+    feature_md5 = next(iter(features.keys()))
     assert "BOLD_fc" == features[feature_md5]["name"]
     read_df = storage.read_df(feature_md5=feature_md5)
     assert list(read_df.columns) == stored_names

{junifer-0.0.3.dev186.dist-info → junifer-0.0.4.dev8.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: junifer
-Version: 0.0.3.dev186
+Version: 0.0.4.dev8
 Summary: JUelich NeuroImaging FEature extractoR
 Author-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Synchon Mandal <s.mandal@fz-juelich.de>
 Maintainer-email: Fede Raimondo <f.raimondo@fz-juelich.de>, Synchon Mandal <s.mandal@fz-juelich.de>
@@ -65,10 +65,11 @@ Requires-Dist: bctpy (==0.6.0) ; extra == 'onthefly'
 [![Code style: black](https://img.shields.io/badge/code%20style-black-000000.svg?style=flat-square)](https://github.com/psf/black)
 [![Ruff](https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/charliermarsh/ruff/main/assets/badge/v2.json)](https://github.com/charliermarsh/ruff)
 [![pre-commit](https://img.shields.io/badge/pre--commit-enabled-brightgreen?logo=pre-commit)](https://github.com/pre-commit/pre-commit)
+[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.8176570.svg)](https://doi.org/10.5281/zenodo.8176570)
 
 ## About
 
-junifer is a data handling and feature extraction library targeted towards neuroimaging data specifically functional MRI data.
+`junifer` is a data handling and feature extraction library targeted towards neuroimaging data specifically functional MRI data.
 
 It is currently being developed and maintained at the [Applied Machine Learning](https://www.fz-juelich.de/en/inm/inm-7/research-groups/applied-machine-learning-aml) group at [Forschungszentrum Juelich](https://www.fz-juelich.de/en), Germany. Although the library is designed for people working at [Institute of Neuroscience and Medicine - Brain and Behaviour (INM-7)](https://www.fz-juelich.de/en/inm/inm-7), it is designed to be as modular as possible thus enabling others to extend it easily.
 
@@ -109,12 +110,12 @@ conda install -c conda-forge junifer
 
 ## Citation
 
-If you use junifer in a scientific publication, we would appreciate if you cite our work. Currently, we do not have a publication, so feel free to use the project [URL](https://juaml.github.io/junifer).
+If you use `junifer` in a scientific publication, we would appreciate if you cite our work. Currently, we do not have a publication, so feel free to use the project's [Zenodo URL](https://doi.org/10.5281/zenodo.8176569).
 
 ## Funding
 
 We thank the [Helmholtz Imaging Platform](https://helmholtz-imaging.de/) and
-[SMHB](https://www.fz-juelich.de/en/smhb) for supporting development of Junifer.
+[SMHB](https://www.fz-juelich.de/en/smhb) for supporting development of `junifer`.
 (The funding sources had no role in the design, implementation and evaluation of the pipeline.)
 
 ## Contribution
@@ -126,7 +127,7 @@ Contributions are welcome and greatly appreciated. Please read the [guidelines](
 junifer is released under the AGPL v3 license:
 
 junifer, FZJuelich AML neuroimaging feature extraction library.
-Copyright (C) 2022, authors of junifer.
+Copyright (C) 2023, authors of junifer.
 
 This program is free software: you can redistribute it and/or modify
 it under the terms of the GNU Affero General Public License as published by

{junifer-0.0.3.dev186.dist-info → junifer-0.0.4.dev8.dist-info}/RECORD

@@ -1,5 +1,5 @@
 junifer/__init__.py,sha256=x1UR2jUcrUdm2HNl-3Qvyi4UUrU6ms5qm2qcmNY7zZk,391
-junifer/_version.py,sha256=xYaygwsoOVGnfKSSbAQ2gIdNJ6kT7a3YwiHoHwUxT2Y,177
+junifer/_version.py,sha256=E4uKRriX8g1SlYHfxA-JdKnnyeDdjAOGVIjgZH8igQ0,173
 junifer/stats.py,sha256=KUX4jJcLWnlE34coet8EkdFypFd-td4Vtpx5LvlomVs,5879
 junifer/api/__init__.py,sha256=YILu9M7SC0Ri4CVd90fELH2OnK_gvCYAXCoqBNCFE8E,257
 junifer/api/cli.py,sha256=epPGiMU9szF0Dbv-_ty3hxxWPUd8KM-gqQI10TJEl2Y,9843
@@ -34,7 +34,7 @@ junifer/configs/juseless/datagrabbers/tests/test_ucla.py,sha256=e-jdvcZ9B0mka6_5
 junifer/configs/juseless/datagrabbers/tests/test_ukb_vbm.py,sha256=b9hjc1mgO--PSRC3id2EzzfE2yWNsuZ2UI47a6sfGZU,1025
 junifer/data/__init__.py,sha256=UKoiW2DfuNgWlpdqSVPWAED1tSMl9ygUHMsCnFXPp2A,507
 junifer/data/coordinates.py,sha256=mPiaOdw3HY5c_5geGiQbHjKCTvj2YVTXie0Y6HLFk_I,4896
-junifer/data/masks.py,sha256=oRvKzbm4Z4q3Dz1PdnsuS4t08x70s1fpbEgPeFKuy2Y,11277
+junifer/data/masks.py,sha256=SYt2EJCUCw7KAl8nBK5fRFRonrfIVQn-DH6aQsnr7vE,11280
 junifer/data/parcellations.py,sha256=REmkmRwWH9IrJJO_BhKq-xl4Z6IcdSFfEpYKTKLaB8k,48818
 junifer/data/utils.py,sha256=K9quLIoWRmm2QFM8Rdy_5bYsWb_XhL0l5Uq_1Sie0kA,1274
 junifer/data/VOIs/meta/CogAC_VOIs.txt,sha256=Sr5_E712OLdeQRyUcDNM0wLBvZIyO6gc9Q7KkyJHX1A,398
@@ -59,7 +59,7 @@ junifer/data/masks/vickery-patil/CAT12_IXI555_MNI152_TMP_GS_GMprob0.2_clean_3mm.
 junifer/data/masks/vickery-patil/GMprob0.2_cortex_3mm_NA_rm.nii.gz,sha256=jfMe_4H9XEnArYms5bSQbqS2V1_HbLHTfI5amQa_Pes,8700
 junifer/data/tests/test_coordinates.py,sha256=RCYOuaAjs2wqPeFHX-l9Bryt5Zw5mOIV0WpsH891RwA,3240
 junifer/data/tests/test_data_utils.py,sha256=Vy7x8zaHws5hmn92PKSv3H38hU2kamOpyaH6nG_NNpw,1086
-junifer/data/tests/test_masks.py,sha256=sJ_rXAPddQ_2SAGvew1FEEMcLwy0NEfQv8TsCvgA2pA,13266
+junifer/data/tests/test_masks.py,sha256=uhY3dm0CGbKTMs8hAMJxQx0KMcl9qmfaee3guBrdYas,13269
 junifer/data/tests/test_parcellations.py,sha256=3JCTuaT4Ugs3t_EX5XWbr52bSaMSnoROF81Nthmn9Nc,31361
 junifer/datagrabber/__init__.py,sha256=xKMQMjqoWul13YluGTLLMBgKahUg5jJKi4phPih3XJU,634
 junifer/datagrabber/base.py,sha256=6JoIDBCWXCIQdjSg6OIbdrqbQKzV6_zBTk0Zs1Wj6_Y,4622
@@ -140,7 +140,7 @@ junifer/markers/temporal_snr/temporal_snr_spheres.py,sha256=VoxVA_b48Ppf7P6cxYq0
 junifer/markers/temporal_snr/tests/test_temporal_snr_base.py,sha256=KRln5ibLTJJQ_f3pnioATfwyhK5htGc2o2J7CPcoyfs,426
 junifer/markers/temporal_snr/tests/test_temporal_snr_parcels.py,sha256=KCfJFpg6oXR4hs1yGOrdV8xSh6zJi7dv1o75Lraq_nc,1594
 junifer/markers/temporal_snr/tests/test_temporal_snr_spheres.py,sha256=rbfL4vQMtK_PbeIlHccp62wj9Ue97rJUxpupljmlkJs,1833
-junifer/markers/tests/test_collection.py,sha256=HQvW6LNB2vSSSAImBU6paVOanyGJBY500_Yf9IrLJ_M,6850
+junifer/markers/tests/test_collection.py,sha256=nsf2EhU6bBtO2g4uj_99E7tPWhV6IoL9mO3LmUArIZ8,6853
 junifer/markers/tests/test_ets_rss.py,sha256=uVNcSWh6TYCtwZACcununV38IBXY5loBaP7pBcDnwL4,2619
 junifer/markers/tests/test_marker_utils.py,sha256=SR3ADWI3uGv4ozYqVu-rMZnJVqP6JnjLBgo6qUm16Wk,1478
 junifer/markers/tests/test_markers_base.py,sha256=cbuCeMmjyFMP1ea6J6XRsBQo8CivQ41ooABiT1Snj2k,3076
@@ -166,12 +166,12 @@ junifer/preprocess/tests/test_preprocess_base.py,sha256=UHuH_YOK7AU3AfApWqgB6YLG
 junifer/storage/__init__.py,sha256=QlzBw9UrRhmg_f7zQVas9h313u3sfZIBicA3_0Skm4M,337
 junifer/storage/base.py,sha256=LtiB3cKfQQKw0gfoWM_H8PlA3sQlxosbzGxA_sA9RP8,9459
 junifer/storage/hdf5.py,sha256=7JbLUrOLI0f7WEGMSv-YO9AJGi1-rAX1sqGU6X7NFbE,35520
-junifer/storage/pandas_base.py,sha256=UpMXztwDVSTN3FN_4_73wtxycX8FfghEJ3KZmAZloXE,7450
+junifer/storage/pandas_base.py,sha256=Qu3Az-xEaFftsiZwordONnOF2UBO1JgkrP8tmxhXUN4,7473
 junifer/storage/sqlite.py,sha256=6pcxC2RN6YHq2BePvcpORoMk9mJQ0bFfv1IY2YYGmio,21243
 junifer/storage/utils.py,sha256=amE5AQI3vWoMRUV6pwwLcRgl4sL0ooYjp59JpuHHk6U,7257
-junifer/storage/tests/test_hdf5.py,sha256=4CunM2xwhPuci4Z78Q7F0QA2Ocu-sgpzokjVhfauzN0,29334
+junifer/storage/tests/test_hdf5.py,sha256=R-3kXMwAMsmInaS2cytjbOmKh4riQc5WJKbYkH3wZkY,29337
 junifer/storage/tests/test_pandas_base.py,sha256=y_TfUGpuXkj_39yVon3rMDxMeBrZXs58ZW6OSty5LNw,4058
-junifer/storage/tests/test_sqlite.py,sha256=kua5BqNKpUG1MTqldHLNiEcfomX6RS3dzDA_KlbJE4g,28294
+junifer/storage/tests/test_sqlite.py,sha256=JPfE6r34o86XkKaB6yjMVmO_2vUV40DjsaHICagUtjk,28318
 junifer/storage/tests/test_storage_base.py,sha256=YzgfspuggzXejyPIoRCPST3ZzH9Pi7dgl0IHN7kynXM,3071
 junifer/storage/tests/test_utils.py,sha256=kpnp1IozQGKHXCpZbg2yGBe_XtDfsL8mfJGE6a9vYyk,11853
 junifer/testing/__init__.py,sha256=5rCgJOF9m2du2u4Qsaze9SZ1oDjKptn6-QbN7VPhD1I,235
@@ -190,10 +190,10 @@ junifer/utils/fs.py,sha256=Jd9AoV2fIF7pT7KhXsn8T1O1fJ1_SFZgaFuOBAM7DG8,460
 junifer/utils/logging.py,sha256=phBwOFaK6ejqbSjkCSAkZhhdo4sr01GdVZmJIL8t-Lw,8994
 junifer/utils/tests/test_fs.py,sha256=WQS7cKlKEZ742CIuiOYYpueeAhY9PqlastfDVpVVtvE,923
 junifer/utils/tests/test_logging.py,sha256=l8oo-AiBV7H6_IzlsNcj__cLeZBUvgIGoaMszD9VaJg,7754
-junifer-0.0.3.dev186.dist-info/AUTHORS.rst,sha256=rmULKpchpSol4ExWFdm-qu4fkpSZPYqIESVJBZtGb6E,163
-junifer-0.0.3.dev186.dist-info/LICENSE.md,sha256=MqCnOBu8uXsEOzRZWh9EBVfVz-kE9NkXcLCrtGXo2yU,34354
-junifer-0.0.3.dev186.dist-info/METADATA,sha256=Uqcm_sDbWts6RgMsVXnEYIGOLXbdb8iIoMXZsHLG_jU,6706
-junifer-0.0.3.dev186.dist-info/WHEEL,sha256=pkctZYzUS4AYVn6dJ-7367OJZivF2e8RA9b_ZBjif18,92
-junifer-0.0.3.dev186.dist-info/entry_points.txt,sha256=DxFvKq0pOqRunAK0FxwJcoDfV1-dZvsFDpD5HRqSDhw,48
-junifer-0.0.3.dev186.dist-info/top_level.txt,sha256=4bAq1R2QFQ4b3hohjys2JBvxrl0GKk5LNFzYvz9VGcA,8
-junifer-0.0.3.dev186.dist-info/RECORD,,
+junifer-0.0.4.dev8.dist-info/AUTHORS.rst,sha256=rmULKpchpSol4ExWFdm-qu4fkpSZPYqIESVJBZtGb6E,163
+junifer-0.0.4.dev8.dist-info/LICENSE.md,sha256=MqCnOBu8uXsEOzRZWh9EBVfVz-kE9NkXcLCrtGXo2yU,34354
+junifer-0.0.4.dev8.dist-info/METADATA,sha256=QYFLL5lyVIGdW1U9PZ1wMK_ndpOYvZ4fXL3EtDKRGAQ,6832
+junifer-0.0.4.dev8.dist-info/WHEEL,sha256=AtBG6SXL3KF_v0NxLf0ehyVOh0cold-JbJYXNGorC6Q,92
+junifer-0.0.4.dev8.dist-info/entry_points.txt,sha256=DxFvKq0pOqRunAK0FxwJcoDfV1-dZvsFDpD5HRqSDhw,48
+junifer-0.0.4.dev8.dist-info/top_level.txt,sha256=4bAq1R2QFQ4b3hohjys2JBvxrl0GKk5LNFzYvz9VGcA,8
+junifer-0.0.4.dev8.dist-info/RECORD,,

{junifer-0.0.3.dev186.dist-info → junifer-0.0.4.dev8.dist-info}/WHEEL

@@ -1,5 +1,5 @@
 Wheel-Version: 1.0
-Generator: bdist_wheel (0.40.0)
+Generator: bdist_wheel (0.41.0)
 Root-Is-Purelib: true
 Tag: py3-none-any