jaxsim 0.2.dev188__py3-none-any.whl → 0.6.1.dev2__py3-none-any.whl

jaxsim/math/conv.py

@@ -1,114 +0,0 @@
-import jax.numpy as jnp
-
-import jaxsim.typing as jtp
-
-from .skew import Skew
-
-
-class Convert:
-    @staticmethod
-    def coordinates_tf(X: jtp.Matrix, p: jtp.Matrix) -> jtp.Matrix:
-        """
-        Transform coordinates from one frame to another using a transformation matrix.
-
-        Args:
-            X (jtp.Matrix): The transformation matrix (4x4 or 6x6).
-            p (jtp.Matrix): The coordinates to be transformed (3xN).
-
-        Returns:
-            jtp.Matrix: Transformed coordinates (3xN).
-
-        Raises:
-            ValueError: If the input matrix p does not have shape (3, N).
-        """
-        X = X.squeeze()
-        p = p.squeeze()
-
-        # If p has shape (X,), transform it to a column vector
-        p = jnp.vstack(p) if len(p.shape) == 1 else p
-        rows_p, cols_p = p.shape
-
-        if rows_p != 3:
-            raise ValueError(p.shape)
-
-        R = X[0:3, 0:3]
-        r = -Skew.vee(R.T @ X[0:3, 3:6])
-
-        if cols_p > 1:
-            r = jnp.tile(r, (1, cols_p))
-
-        assert r.shape == p.shape, (r.shape, p.shape)
-
-        xp = R @ (p - r)
-        return jnp.vstack(xp)
-
-    @staticmethod
-    def velocities_threed(v_6d: jtp.Matrix, p: jtp.Matrix) -> jtp.Matrix:
-        """
-        Compute 3D velocities based on 6D velocities and positions.
-
-        Args:
-            v_6d (jtp.Matrix): The 6D velocities (6xN).
-            p (jtp.Matrix): The positions (3xN).
-
-        Returns:
-            jtp.Matrix: 3D velocities (3xN).
-
-        Raises:
-            ValueError: If the input matrices have incompatible shapes.
-        """
-        v = v_6d.squeeze()
-        p = p.squeeze()
-
-        # If the arrays have shape (X,), transform them to column vectors
-        v = jnp.vstack(v) if len(v.shape) == 1 else v
-        p = jnp.vstack(p) if len(p.shape) == 1 else p
-
-        rows_v, cols_v = v.shape
-        _, cols_p = p.shape
-
-        if cols_v == 1 and cols_p > 1:
-            v = jnp.repeat(v, cols_p, axis=1)
-
-        if rows_v == 6:
-            vp = v[0:3, :] + jnp.cross(v[3:6, :], p, axis=0)
-        else:
-            raise ValueError(v.shape)
-
-        return jnp.vstack(vp)
-
-    @staticmethod
-    def forces_sixd(f_3d: jtp.Matrix, p: jtp.Matrix) -> jtp.Matrix:
-        """
-        Compute 6D forces based on 3D forces and positions.
-
-        Args:
-            f_3d (jtp.Matrix): The 3D forces (3xN).
-            p (jtp.Matrix): The positions (3xN).
-
-        Returns:
-            jtp.Matrix: 6D forces (6xN).
-
-        Raises:
-            ValueError: If the input matrices have incompatible shapes.
-        """
-        f = f_3d.squeeze()
-        p = p.squeeze()
-
-        # If the arrays have shape (X,), transform them to column vectors
-        fp = jnp.vstack(f) if len(f.shape) == 1 else f
-        p = jnp.vstack(p) if len(p.shape) == 1 else p
-
-        _, cols_p = p.shape
-        rows_fp, cols_fp = fp.shape
-
-        # Number of columns must match
-        if cols_p != cols_fp:
-            raise ValueError(cols_p, cols_fp)
-
-        if rows_fp == 3:
-            f = jnp.vstack([fp, jnp.cross(p, fp, axis=0)])
-        else:
-            raise ValueError(fp.shape)
-
-        return jnp.vstack(f)

jaxsim/math/joint.py

@@ -1,102 +0,0 @@
-from typing import Tuple, Union
-
-import jax.numpy as jnp
-
-import jaxsim.typing as jtp
-from jaxsim.parsers.descriptions import JointDescriptor, JointGenericAxis, JointType
-
-from .adjoint import Adjoint
-from .rotation import Rotation
-
-
-def jcalc(
-    jtyp: Union[JointType, JointDescriptor], q: jtp.Float
-) -> Tuple[jtp.Matrix, jtp.Vector]:
-    """
-    Compute the spatial transformation matrix and motion subspace vector for a joint.
-
-    Args:
-        jtyp (Union[JointType, JointDescriptor]): The type or descriptor of the joint.
-        q (jtp.Float): The joint configuration parameter.
-
-    Returns:
-        Tuple[jtp.Matrix, jtp.Vector]: A tuple containing the spatial transformation matrix (6x6) and the motion subspace vector (6x1).
-
-    Raises:
-        ValueError: If the joint type or descriptor is not recognized.
-    """
-    if isinstance(jtyp, JointType):
-        code = jtyp
-    elif isinstance(jtyp, JointDescriptor):
-        code = jtyp.code
-    else:
-        raise ValueError(jtyp)
-
-    match code:
-        case JointType.F:
-            raise ValueError("Fixed joints shouldn't be here")
-
-        case JointType.R:
-            jtyp: JointGenericAxis
-
-            Xj = Adjoint.from_rotation_and_translation(
-                rotation=Rotation.from_axis_angle(vector=q * jtyp.axis), inverse=True
-            )
-
-            S = jnp.vstack(jnp.hstack([jnp.zeros(3), jtyp.axis.squeeze()]))
-
-        case JointType.P:
-            jtyp: JointGenericAxis
-
-            Xj = Adjoint.from_rotation_and_translation(
-                translation=jnp.array(q * jtyp.axis), inverse=True
-            )
-
-            S = jnp.vstack(jnp.hstack([jtyp.axis.squeeze(), jnp.zeros(3)]))
-
-        case JointType.Rx:
-            Xj = Adjoint.from_rotation_and_translation(
-                rotation=Rotation.x(theta=q), inverse=True
-            )
-
-            S = jnp.vstack([0, 0, 0, 1.0, 0, 0])
-
-        case JointType.Ry:
-            Xj = Adjoint.from_rotation_and_translation(
-                rotation=Rotation.y(theta=q), inverse=True
-            )
-
-            S = jnp.vstack([0, 0, 0, 0, 1.0, 0])
-
-        case JointType.Rz:
-            Xj = Adjoint.from_rotation_and_translation(
-                rotation=Rotation.z(theta=q), inverse=True
-            )
-
-            S = jnp.vstack([0, 0, 0, 0, 0, 1.0])
-
-        case JointType.Px:
-            Xj = Adjoint.from_rotation_and_translation(
-                translation=jnp.array([q, 0.0, 0.0]), inverse=True
-            )
-
-            S = jnp.vstack([1.0, 0, 0, 0, 0, 0])
-
-        case JointType.Py:
-            Xj = Adjoint.from_rotation_and_translation(
-                translation=jnp.array([0.0, q, 0.0]), inverse=True
-            )
-
-            S = jnp.vstack([0, 1.0, 0, 0, 0, 0])
-
-        case JointType.Pz:
-            Xj = Adjoint.from_rotation_and_translation(
-                translation=jnp.array([0.0, 0.0, q]), inverse=True
-            )
-
-            S = jnp.vstack([0, 0, 1.0, 0, 0, 0])
-
-        case _:
-            raise ValueError(code)
-
-    return Xj, S

jaxsim/math/plucker.py

@@ -1,100 +0,0 @@
-from typing import Tuple
-
-import jax.numpy as jnp
-
-import jaxsim.typing as jtp
-
-from .skew import Skew
-
-
-class Plucker:
-    @staticmethod
-    def from_rot_and_trans(dcm: jtp.Matrix, translation: jtp.Vector) -> jtp.Matrix:
-        """
-        Computes the Plücker matrix from a rotation matrix and a translation vector.
-
-        Args:
-            dcm: A 3x3 rotation matrix.
-            translation: A 3x1 translation vector.
-
-        Returns:
-            A 6x6 Plücker matrix.
-        """
-        R = dcm
-
-        X = jnp.block(
-            [
-                [R, -R @ Skew.wedge(vector=translation)],
-                [jnp.zeros(shape=(3, 3)), R],
-            ]
-        )
-
-        return X
-
-    @staticmethod
-    def to_rot_and_trans(adjoint: jtp.Matrix) -> Tuple[jtp.Matrix, jtp.Vector]:
-        """
-        Computes the rotation matrix and translation vector from a Plücker matrix.
-
-        Args:
-            adjoint: A 6x6 Plücker matrix.
-
-        Returns:
-            A tuple containing the 3x3 rotation matrix and the 3x1 translation vector.
-        """
-        X = adjoint
-
-        R = X[0:3, 0:3]
-        p = -Skew.vee(R.T @ X[0:3, 3:6])
-
-        return R, p
-
-    @staticmethod
-    def from_transform(transform: jtp.Matrix) -> jtp.Matrix:
-        """
-        Computes the Plücker matrix from a homogeneous transformation matrix.
-
-        Args:
-            transform: A 4x4 homogeneous transformation matrix.
-
-        Returns:
-            A 6x6 Plücker matrix.
-        """
-        H = transform
-
-        R = H[0:3, 0:3]
-        p = H[0:3, 3]
-
-        X = jnp.block(
-            [
-                [R, Skew.wedge(vector=p) @ R],
-                [jnp.zeros(shape=(3, 3)), R],
-            ]
-        )
-
-        return X
-
-    @staticmethod
-    def to_transform(adjoint: jtp.Matrix) -> jtp.Matrix:
-        """
-        Computes the homogeneous transformation matrix from a Plücker matrix.
-
-        Args:
-            adjoint: A 6x6 Plücker matrix.
-
-        Returns:
-            A 4x4 homogeneous transformation matrix.
-        """
-        X = adjoint
-
-        R = X[0:3, 0:3]
-        o_x_R = X[0:3, 3:6]
-
-        H = jnp.vstack(
-            [
-                jnp.hstack([R, Skew.vee(matrix=o_x_R @ R.T)]),
-                [0, 0, 0, 1],
-            ]
-        )
-
-        return H

jaxsim/physics/__init__.py

@@ -1,12 +0,0 @@
-import numpy.typing
-
-from . import algos, model
-
-
-def default_gravity() -> numpy.typing.NDArray:
-    import jax.numpy as jnp
-
-    return jnp.array([0, 0, -9.80])
-
-
-# from . import dyn, models, spatial, threed, utils

jaxsim/physics/algos/aba.py

@@ -1,254 +0,0 @@
-from typing import Tuple
-
-import jax
-import jax.numpy as jnp
-import numpy as np
-
-import jaxsim.typing as jtp
-from jaxsim.math.adjoint import Adjoint
-from jaxsim.math.cross import Cross
-from jaxsim.physics.model.physics_model import PhysicsModel
-
-from . import utils
-
-
-def aba(
-    model: PhysicsModel,
-    xfb: jtp.Vector,
-    q: jtp.Vector,
-    qd: jtp.Vector,
-    tau: jtp.Vector,
-    f_ext: jtp.Matrix | None = None,
-) -> Tuple[jtp.Vector, jtp.Vector]:
-    """
-    Articulated Body Algorithm (ABA) algorithm for forward dynamics.
-
-    Args:
-        model: The physics model of the articulated body or robot.
-        xfb: The floating base state vector containing quaternion (4D) and position (3D).
-        q: Joint positions (Generalized coordinates).
-        qd: Joint velocities.
-        tau: Joint torques or forces.
-        f_ext: External forces and torques acting on each link. Defaults to None.
-
-    Returns:
-        A tuple containing the resulting base acceleration (in inertial-fixed representation)
-        and joint accelerations.
-
-    Note:
-        The ABA algorithm is used to compute the accelerations of the links in an articulated body or robot system given
-        inputs such as joint positions, velocities, torques, and external forces. The algorithm involves multiple passes
-        to calculate intermediate quantities required for simulating the motion of the robot.
-    """
-
-    x_fb, q, qd, _, tau, f_ext = utils.process_inputs(
-        physics_model=model, xfb=xfb, q=q, qd=qd, tau=tau, f_ext=f_ext
-    )
-
-    # Extract data from the physics model
-    pre_X_λi = model.tree_transforms
-    M = model.spatial_inertias
-    i_X_pre = model.joint_transforms(q=q)
-    S = model.motion_subspaces(q=q)
-    λ = model.parent_array()
-
-    # Initialize buffers
-    v = jnp.array([jnp.zeros([6, 1])] * model.NB)
-    MA = jnp.array([jnp.zeros([6, 6])] * model.NB)
-    pA = jnp.array([jnp.zeros([6, 1])] * model.NB)
-    c = jnp.array([jnp.zeros([6, 1])] * model.NB)
-    i_X_λi = jnp.zeros_like(i_X_pre)
-
-    # Base pose B_X_W and velocity
-    base_quat = jnp.vstack(x_fb[0:4])
-    base_pos = jnp.vstack(x_fb[4:7])
-    base_vel = jnp.vstack(jnp.hstack([x_fb[10:13], x_fb[7:10]]))
-
-    # 6D transform of base velocity
-    B_X_W = Adjoint.from_quaternion_and_translation(
-        quaternion=base_quat,
-        translation=base_pos,
-        inverse=True,
-        normalize_quaternion=True,
-    )
-    i_X_λi = i_X_λi.at[0].set(B_X_W)
-
-    # Transforms link -> base
-    i_X_0 = jnp.zeros_like(pre_X_λi)
-    i_X_0 = i_X_0.at[0].set(jnp.eye(6))
-
-    # Initialize base quantities
-    if model.is_floating_base:
-        # Base velocity v₀
-        v_0 = B_X_W @ base_vel
-        v = v.at[0].set(v_0)
-
-        # AB inertia (Mᴬ) and AB bias forces (pᴬ)
-        MA_0 = M[0]
-        MA = MA.at[0].set(MA_0)
-        pA_0 = Cross.vx_star(v[0]) @ MA_0 @ v[0] - Adjoint.inverse(
-            B_X_W
-        ).T @ jnp.vstack(f_ext[0])
-        pA = pA.at[0].set(pA_0)
-
-    Pass1Carry = Tuple[
-        jtp.MatrixJax,
-        jtp.MatrixJax,
-        jtp.MatrixJax,
-        jtp.MatrixJax,
-        jtp.MatrixJax,
-        jtp.MatrixJax,
-    ]
-
-    pass_1_carry = (i_X_λi, v, c, MA, pA, i_X_0)
-
-    # Pass 1
-    def loop_body_pass1(carry: Pass1Carry, i: jtp.Int) -> Tuple[Pass1Carry, None]:
-        ii = i - 1
-        i_X_λi, v, c, MA, pA, i_X_0 = carry
-
-        # Compute parent-to-child transform
-        i_X_λi_i = i_X_pre[i] @ pre_X_λi[i]
-        i_X_λi = i_X_λi.at[i].set(i_X_λi_i)
-
-        # Propagate link velocity
-        vJ = S[i] * qd[ii] if qd.size != 0 else S[i] * 0
-
-        v_i = i_X_λi[i] @ v[λ[i]] + vJ
-        v = v.at[i].set(v_i)
-
-        c_i = Cross.vx(v[i]) @ vJ
-        c = c.at[i].set(c_i)
-
-        # Initialize articulated-body inertia
-        MA_i = jnp.array(M[i])
-        MA = MA.at[i].set(MA_i)
-
-        # Initialize articulated-body bias forces
-        i_X_0_i = i_X_λi[i] @ i_X_0[model.parent[i]]
-        i_X_0 = i_X_0.at[i].set(i_X_0_i)
-        i_Xf_W = Adjoint.inverse(i_X_0[i] @ B_X_W).T
-
-        pA_i = Cross.vx_star(v[i]) @ M[i] @ v[i] - i_Xf_W @ jnp.vstack(f_ext[i])
-        pA = pA.at[i].set(pA_i)
-
-        return (i_X_λi, v, c, MA, pA, i_X_0), None
-
-    (i_X_λi, v, c, MA, pA, i_X_0), _ = jax.lax.scan(
-        f=loop_body_pass1,
-        init=pass_1_carry,
-        xs=np.arange(start=1, stop=model.NB),
-    )
-
-    U = jnp.zeros_like(S)
-    d = jnp.zeros(shape=(model.NB, 1))
-    u = jnp.zeros(shape=(model.NB, 1))
-
-    Pass2Carry = Tuple[
-        jtp.MatrixJax,
-        jtp.MatrixJax,
-        jtp.MatrixJax,
-        jtp.MatrixJax,
-        jtp.MatrixJax,
-    ]
-
-    pass_2_carry = (U, d, u, MA, pA)
-
-    # Pass 2
-    def loop_body_pass2(carry: Pass2Carry, i: jtp.Int) -> Tuple[Pass2Carry, None]:
-        ii = i - 1
-        U, d, u, MA, pA = carry
-
-        # Compute intermediate results
-        U_i = MA[i] @ S[i]
-        U = U.at[i].set(U_i)
-
-        d_i = S[i].T @ U[i]
-        d = d.at[i].set(d_i.squeeze())
-
-        u_i = tau[ii] - S[i].T @ pA[i] if tau.size != 0 else -S[i].T @ pA[i]
-        u = u.at[i].set(u_i.squeeze())
-
-        # Compute the articulated-body inertia and bias forces of this link
-        Ma = MA[i] - U[i] / d[i] @ U[i].T
-        pa = pA[i] + Ma @ c[i] + U[i] * u[i] / d[i]
-
-        # Propagate them to the parent, handling the base link
-        def propagate(
-            MA_pA: Tuple[jtp.MatrixJax, jtp.MatrixJax]
-        ) -> Tuple[jtp.MatrixJax, jtp.MatrixJax]:
-            MA, pA = MA_pA
-
-            MA_λi = MA[λ[i]] + i_X_λi[i].T @ Ma @ i_X_λi[i]
-            MA = MA.at[λ[i]].set(MA_λi)
-
-            pA_λi = pA[λ[i]] + i_X_λi[i].T @ pa
-            pA = pA.at[λ[i]].set(pA_λi)
-
-            return MA, pA
-
-        MA, pA = jax.lax.cond(
-            pred=jnp.array([λ[i] != 0, model.is_floating_base]).any(),
-            true_fun=propagate,
-            false_fun=lambda MA_pA: MA_pA,
-            operand=(MA, pA),
-        )
-
-        return (U, d, u, MA, pA), None
-
-    (U, d, u, MA, pA), _ = jax.lax.scan(
-        f=loop_body_pass2,
-        init=pass_2_carry,
-        xs=np.flip(np.arange(start=1, stop=model.NB)),
-    )
-
-    if model.is_floating_base:
-        a0 = jnp.linalg.solve(-MA[0], pA[0])
-    else:
-        a0 = -B_X_W @ jnp.vstack(model.gravity)
-
-    a = jnp.zeros_like(S)
-    a = a.at[0].set(a0)
-    qdd = jnp.zeros_like(q)
-
-    Pass3Carry = Tuple[jtp.MatrixJax, jtp.VectorJax]
-    pass_3_carry = (a, qdd)
-
-    # Pass 3
-    def loop_body_pass3(carry: Pass3Carry, i: jtp.Int) -> Tuple[Pass3Carry, None]:
-        ii = i - 1
-        a, qdd = carry
-
-        # Propagate link accelerations
-        a_i = i_X_λi[i] @ a[λ[i]] + c[i]
-
-        # Compute joint accelerations
-        qdd_ii = (u[i] - U[i].T @ a_i) / d[i]
-        qdd = qdd.at[i - 1].set(qdd_ii.squeeze()) if qdd.size != 0 else qdd
-
-        a_i = a_i + S[i] * qdd[ii] if qdd.size != 0 else a_i
-        a = a.at[i].set(a_i)
-
-        return (a, qdd), None
-
-    (a, qdd), _ = jax.lax.scan(
-        f=loop_body_pass3,
-        init=pass_3_carry,
-        xs=np.arange(1, model.NB),
-    )
-
-    # Handle 1 DoF models
-    qdd = jnp.atleast_1d(qdd.squeeze())
-    qdd = jnp.vstack(qdd) if qdd.size > 0 else jnp.empty(shape=(0, 1))
-
-    # Get the resulting base acceleration (w/o gravity) in body-fixed representation
-    B_a_WB = a[0]
-
-    # Convert the base acceleration to inertial-fixed representation, and add gravity
-    W_a_WB = jnp.vstack(
-        jnp.linalg.solve(B_X_W, B_a_WB) + jnp.vstack(model.gravity)
-        if model.is_floating_base
-        else jnp.zeros(6)
-    )
-
-    return W_a_WB, qdd