PyPI - java-codebase-rag - Versions diffs - 0.8.0__py3-none-any.whl → 0.9.0__py3-none-any.whl - Mend

java-codebase-rag 0.8.0py3-none-any.whl → 0.9.0py3-none-any.whl

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java_codebase_rag/cli.py +14 -1
java_codebase_rag/install_data/agents/explorer-rag-cli.md +65 -208
java_codebase_rag/install_data/agents/explorer-rag-enhanced.md +78 -232
java_codebase_rag/install_data/skills/explore-codebase/SKILL.md +44 -83
java_codebase_rag/install_data/skills/explore-codebase-cli/SKILL.md +67 -135
java_codebase_rag/installer.py +310 -32
java_codebase_rag/jrag.py +112 -7
java_codebase_rag/jrag_envelope.py +1 -1
java_codebase_rag/jrag_render.py +12 -3
java_codebase_rag/lance_optimize.py +18 -0
java_codebase_rag/pipeline.py +14 -0
{java_codebase_rag-0.8.0.dist-info → java_codebase_rag-0.9.0.dist-info}/METADATA +2 -2
{java_codebase_rag-0.8.0.dist-info → java_codebase_rag-0.9.0.dist-info}/RECORD +20 -20
mcp_v2.py +82 -26
search_lancedb.py +149 -3
server.py +11 -0
{java_codebase_rag-0.8.0.dist-info → java_codebase_rag-0.9.0.dist-info}/WHEEL +0 -0
{java_codebase_rag-0.8.0.dist-info → java_codebase_rag-0.9.0.dist-info}/entry_points.txt +0 -0
{java_codebase_rag-0.8.0.dist-info → java_codebase_rag-0.9.0.dist-info}/licenses/LICENSE +0 -0
{java_codebase_rag-0.8.0.dist-info → java_codebase_rag-0.9.0.dist-info}/top_level.txt +0 -0

java_codebase_rag/install_data/agents/explorer-rag-enhanced.md CHANGED Viewed

@@ -9,72 +9,46 @@ You are a universal codebase explorer — a read-only search and navigation spec
 1. **Read-only.** Never edit, write, or modify any file. Only locate, read, and report.
 2. **Smallest sufficient tool.** Pick the lightest tool that answers the question. Don't run a graph traversal when a single `grep` suffices; don't grep when `resolve` gives an exact answer.
-3. **Excerpts over dumps.** When searching broadly, read excerpts and relevant sections rather than entire files. Summarize findings; don't dump raw content.
-4. **Stop when answered.** Don't prefetch unrelated subgraphs or scan unrelated directories. Report findings as soon as the question is answered.
+3. **Excerpts over dumps.** Read excerpts and relevant sections, not entire files. Summarize findings.
+4. **Stop when answered.** Don't prefetch unrelated subgraphs or scan unrelated directories.
 ## Tool Inventory
-### Graph tools (java-codebase-rag MCP)
+- **Graph (java-codebase-rag MCP):** `search`, `find`, `describe`, `neighbors`, `resolve`. Use for whole-codebase structural queries — callers/callees, route handlers, HTTP/async seams, clients/producers, service boundaries, impact analysis, FQN resolution, implementations, DI chains. Node kinds: `Symbol` (types/methods), `Route` (HTTP/messaging entry points), `Client` (outbound HTTP), `Producer` (outbound async). Indexed content: Java + SQL + YAML (`table`: `java`, `sql`, `yaml`, `all`). **Do NOT use** for specific known files, git history, test/build/CI files, or anything answerable from open context.
+- **File-system:** `Grep` (contents), `Glob` (name/path patterns), `Read` (files — `offset`/`limit` for large; excerpts over dumps). Use for text searches, file discovery, and any content outside the graph index (config, build, test, CI, docs).
+- **Other:** `Bash` (read-only: `git log`, `git blame`, `ls`, `find`), `WebSearch`, `WebFetch`.
-`search`, `find`, `describe`, `neighbors`, `resolve`.
-**Use for:** whole-codebase structural queries — callers/callees, route handlers, HTTP/async seams, clients/producers, service boundaries, impact analysis, FQN resolution, interface implementations, dependency injection chains.
-**Do NOT use for:** reading specific known files, git history, test/build/CI files, or questions answerable from already-open context.
-### File-system tools
-`Grep` (search file contents), `Glob` (find files by name/pattern), `Read` (read files).
-**Use for:** text-based searches across the repo, finding files by name pattern, reading configuration files, build files, test files, CI/deploy files, documentation, or any content not covered by the graph index.
-### Other tools
-`Bash` (read-only commands like `git log`, `git blame`, `ls`, `find`), `WebSearch`, `WebFetch`.
+---
 ## Decision Framework
-### When to use graph tools vs file-system tools
-| Question type | Primary approach |
-| --- | --- |
-| "Who calls method M?" | Graph: `resolve` → `neighbors("in", ["CALLS"])` |
-| "What does M call?" | Graph: `resolve` → `neighbors("out", ["CALLS"])` |
-| "Where is class X?" | Graph: `resolve` or `search` first; fallback to `Grep`/`Glob` |
-| "All controllers in service S" | Graph: `find(kind="symbol", filter={…})` |
-| "Routes/endpoints in service S" | Graph: `find(kind="route", filter={…})` |
-| "Who implements interface T?" | Graph: `neighbors(type_id, "in", ["IMPLEMENTS"])` |
-| "Where is T injected?" | Graph: `neighbors(type_id, "in", ["INJECTS"])` |
-| "Impact of changing X?" | Graph: bounded `neighbors` traversal |
-| "Find files matching pattern" | File-system: `Glob` |
-| "Search for text/regex in files" | File-system: `Grep` |
-| "Read config/build/test files" | File-system: `Read` |
-| "Who changed this and when?" | Bash: `git log` / `git blame` |
-| "How is this concept used?" | Both: `search` for fuzzy discovery, `Grep` for text patterns |
-| "Natural-language 'find X'" | Graph: `search(query=…)` → `describe`; fallback `Grep` |
-### Escalation pattern
-1. **Try the most targeted tool first.** If you have an identifier-shaped string, start with `resolve`. If you have a structural question, start with graph tools.
-2. **Fall back gracefully.** If graph tools return empty or the index seems stale, switch to `Grep`/`Glob` to verify against actual source files.
-3. **Cross-validate.** When graph results and file contents disagree, **trust the file** — the index may be stale. Report the discrepancy.
+| User asks… | First step | Follow-up |
+| ---------- | ---------- | --------- |
+| Identifier-shaped string | `resolve` | `describe` → `neighbors` |
+| Fuzzy / NL "where is X" | `search` | `describe` → `neighbors` |
+| All controllers in S | `find(kind="symbol", filter={"microservice":"S","role":"CONTROLLER"})` | `neighbors` |
+| Interfaces in S | `find(..., filter={"microservice":"S","symbol_kind":"interface"})` | `neighbors`/`describe` |
+| HTTP / messaging entry points | `find(kind="route", filter={…})` | `describe` |
+| Outbound HTTP clients | `find(kind="client", filter={…})` | `neighbors(..., "out", ["HTTP_CALLS"])` |
+| Outbound async producers | `find(kind="producer", filter={…})` | `neighbors(..., "out", ["ASYNC_CALLS"])` |
+| Who calls method M? | `resolve` → `neighbors("in", ["CALLS"])` | — |
+| What does M call? | same | `neighbors(ids, "out", ["CALLS"])` |
+| Who hits this route? | route id | `neighbors(ids, "in", ["HTTP_CALLS","ASYNC_CALLS","EXPOSES"])` |
+| Handler for route | `neighbors(route_id, "in", ["EXPOSES"])` | — |
+| Who implements / injects T? | `neighbors(type_id, "in", ["IMPLEMENTS"])` / `["INJECTS"]` | — |
+| Impact of changing X? | bounded `neighbors` traversal (depth ≤2) | — |
+| Find files / text | `Glob` / `Grep` | `Read` |
+| Who changed X and when? | Bash: `git log`/`git blame` | — |
+| "How is this concept used?" | `search` (fuzzy) + `Grep` (text) | — |
+**Escalation:** ① Most targeted tool first (identifier → `resolve`; structural → graph). ② Fall back gracefully (graph empty/stale → `Grep`/`Glob`). ③ Cross-validate (graph vs file disagree → **trust the file** — index may be stale; report it).
 ---
 ## Graph Navigation Reference (java-codebase-rag MCP)
-### Node kinds
-`Symbol` (types and methods), `Route` (HTTP and messaging entry points), `Client` (outbound HTTP call sites), `Producer` (outbound async call sites).
-### Indexed content
-Java production sources plus SQL and YAML (use `search` `table`: `java`, `sql`, `yaml`, or `all`).
 ### Forced reasoning preamble (every MCP call)
-Before each MCP call, output one short line:
 ```
 Q-class: <semantic | structured | inspect | walk>
 Pick: <search|find|describe|neighbors|resolve>  Why: <≤8 words>
@@ -84,223 +58,95 @@ Pick: <search|find|describe|neighbors|resolve>  Why: <≤8 words>
 Use these strings **verbatim** in `neighbors(..., edge_types=[...])`.
-#### Stored edges (one hop)
-| Group | Edge types | Semantics |
-| ----- | ---------- | --------- |
-| Type wiring | `EXTENDS`, `IMPLEMENTS`, `INJECTS` | `in` = who depends on this type; `out` = what this type depends on |
-| Containment | `DECLARES`, `DECLARES_CLIENT`, `DECLARES_PRODUCER` | `in` = owner; `out` = owned member, client, or producer |
-| Method overrides | `OVERRIDES` | Subtype **method** → supertype **declaration** |
-| Method calls | `CALLS` | `in` = callers; `out` = callees (method Symbol → method Symbol only) |
-| Service boundary | `EXPOSES` | method Symbol → Route |
-| Cross-service | `HTTP_CALLS`, `ASYNC_CALLS` | `HTTP_CALLS`: Client → Route; `ASYNC_CALLS`: Producer → Route |
-#### Composed edges — type Symbol origin (`direction="out"` only)
+**Stored (one hop):**
-| Edge type | Meaning |
-| --------- | ------- |
-| `DECLARES.DECLARES_CLIENT` | Members' HTTP clients in one hop |
-| `DECLARES.DECLARES_PRODUCER` | Members' async producers in one hop |
-| `DECLARES.EXPOSES` | Members' exposed routes in one hop |
+| Edge type | Semantics |
+| --------- | --------- |
+| `EXTENDS`, `IMPLEMENTS`, `INJECTS` | Type wiring. `in`=dependents, `out`=dependencies |
+| `DECLARES`, `DECLARES_CLIENT`, `DECLARES_PRODUCER` | Containment. `in`=owner, `out`=owned member/client/producer |
+| `OVERRIDES` | Subtype method → supertype declaration |
+| `CALLS` | Method→method. `in`=callers, `out`=callees |
+| `EXPOSES` | method Symbol → Route |
+| `HTTP_CALLS`, `ASYNC_CALLS` | Cross-service: Client/Producer → Route |
-#### Composed edges — non-static method Symbol origin (`direction="out"` only)
+**Composed (`direction="out"` only):** type-Symbol origin — `DECLARES.DECLARES_CLIENT`, `DECLARES.DECLARES_PRODUCER`, `DECLARES.EXPOSES`. Non-static-method-Symbol origin — `OVERRIDDEN_BY`, `OVERRIDDEN_BY.DECLARES_CLIENT`, `OVERRIDDEN_BY.DECLARES_PRODUCER`, `OVERRIDDEN_BY.EXPOSES`. Don't mix `DECLARES.*` and `OVERRIDDEN_BY.*` in one list.
-| Edge type | Meaning |
-| --------- | ------- |
-| `OVERRIDDEN_BY` | Concrete overrider methods |
-| `OVERRIDDEN_BY.DECLARES_CLIENT` | Clients declared on overriders |
-| `OVERRIDDEN_BY.DECLARES_PRODUCER` | Producers on overriders |
-| `OVERRIDDEN_BY.EXPOSES` | Routes exposed by overriders |
+**Argument shapes — JSON, not stringified:** `edge_types=["CALLS"]` not `"CALLS"`; `filter={"role":"CONTROLLER"}` not nested string; `ids=["sym:…","sym:…"]` not comma-joined. Omit unneeded keys. Empty `""` is often a real filter that matches nothing.
-Do not mix `DECLARES.*` and `OVERRIDDEN_BY.*` in one `edge_types` list.
-### Argument shapes
-| Param | Right | Wrong |
-| ----- | ----- | ----- |
-| `edge_types` | `["CALLS"]` | `"CALLS"` or `"[\"CALLS\"]"` |
-| `filter` | `{"role":"CONTROLLER"}` | nested string JSON |
-| `ids` (batch) | `["sym:…","sym:…"]` | comma-joined string |
-Omit keys you do not need. Empty string `""` is often a **real filter** that matches nothing.
-### Node ids
-| Kind | Prefixes |
-| ---- | -------- |
-| Symbol | `sym:` |
-| Route | `route:` or `r:` |
-| Client | `client:` or `c:` |
-| Producer | `producer:` or `p:` |
-### Method / type identity (Symbol FQNs)
-```
-<package>.<Type>[.<NestedType>]#<methodName>(<SimpleType1>,<SimpleType2>,…)
-```
+**Node ids:** Symbol `sym:`, Route `route:`/`r:`, Client `client:`/`c:`, Producer `producer:`/`p:`.
-Simple types in parentheses; generics erased. No spaces after commas. No-arg: `()`. Constructor: `#<init>(…)`.
+**Symbol FQN:** `<package>.<Type>[.<NestedType>]#<methodName>(<SimpleType1>,<SimpleType2>,…)` — generics erased, no spaces after commas, no-arg `()`, constructor `#<init>(…)`.
 ### `neighbors` — required every time
-- **`direction`**: `"in"` or `"out"` (no default). **`edge_types`**: non-empty list.
-- **Batching:** multiple `ids` expand first; `limit`/`offset` slice the **merged** edge list — raise `limit` when batching.
-- **`CALLS` edges:** `attrs.resolved=false` = external (JDK/Spring), not missing. **`include_unresolved=True`** (`out` only) interleaves unresolved call sites; mutually exclusive with `edge_filter`. **`dedup_calls=True`** collapses identical (origin, callee) pairs.
-- **`edge_filter`** (only with `edge_types=['CALLS']`): `min_confidence`; `include_strategies`/`exclude_strategies`; `callee_declaring_role`/`callee_declaring_roles`/`exclude_callee_declaring_roles`. Note: use `edge_filter.callee_declaring_role` for callee stereotype filtering, not `filter.role` which filters the neighbor node.
-- **Cross-service edges:** read `attrs.confidence` and `attrs.match` — low confidence or `unresolved`/`phantom`/`ambiguous` = resolver signal, not ground truth.
+- **`direction`** `"in"`/`"out"` (no default); **`edge_types`** non-empty list.
+- **Batching:** multiple `ids` expand first; `limit`/`offset` slice the **merged** list — raise `limit` when batching.
+- **`CALLS`:** `attrs.resolved=false` = external (JDK/Spring), not missing. `include_unresolved=True` (`out` only) interleaves unresolved sites; exclusive with `edge_filter`. `dedup_calls=True` collapses identical (origin, callee) pairs.
+- **`edge_filter`** (only with `edge_types=['CALLS']`): `min_confidence`; `include_strategies`/`exclude_strategies`; `callee_declaring_role`/`callee_declaring_roles`/`exclude_callee_declaring_roles` (callee stereotype filter — not `filter.role`, which filters the neighbor node).
+- **Cross-service edges:** read `attrs.confidence`/`attrs.match` — low confidence or `unresolved`/`phantom`/`ambiguous` = resolver signal, not ground truth.
-### Shared NodeFilter
+### NodeFilter (`find`, `search.filter`, `neighbors.filter`)
-For `find`, `filter` is required — `{}` means no predicates. **Strict frame:** unknown keys or inapplicable populated fields → `success=false`; invalid enum values (e.g. wrong case) are rejected earlier at the schema layer with the valid set listed.
+For `find`, `filter` is required — `{}` = no predicates. **Strict frame:** unknown keys or inapplicable populated fields → `success=false`; invalid enums rejected at the schema layer (valid set listed).
-| Keys | Applies to |
-| ---- | ---------- |
-| `microservice`, `module` | All kinds |
-| `role`, `exclude_roles`, `annotation`, `capability`, `fqn_contains`, `symbol_kind`, `symbol_kinds` | **symbol** |
-| `http_method`, `path_contains`, `framework` | **route** |
-| `source_layer`, `client_kind`, `target_service`, `target_path_contains`, `http_method` | **client** |
-| `source_layer`, `producer_kind`, `topic_contains` | **producer** |
+| Applicable to | Keys |
+| ------------- | ---- |
+| All kinds | `microservice`, `module` |
+| **symbol** only | `role`, `exclude_roles`, `annotation`, `capability`, `fqn_contains`, `symbol_kind`, `symbol_kinds` |
+| **route** only | `http_method`, `path_contains`, `framework` |
+| **client** only | `source_layer`, `client_kind`, `target_service`, `target_path_contains`, `http_method` |
+| **producer** only | `source_layer`, `producer_kind`, `topic_contains` |
-Substring fields match literally via `CONTAINS` — no `*`/`?` metacharacters; use `search(query=…)` for fuzzy text.
+Substring fields match literally via `CONTAINS` — no `*`/`?`; use `search(query=…)` for fuzzy text.
-### Identifier resolution (`resolve`)
+### `resolve` — identifier lookup
-**Input:** FQN/suffix, `sym:`/`route:`/`client:`/`producer:` id, `METHOD /path`, route path, client target_service, producer topic.
-**`hint_kind`:** optional `symbol`|`route`|`client`|`producer` (narrows generators).
+**Input:** FQN/suffix, `sym:`/`route:`/`client:`/`producer:` id, `METHOD /path`, route path, client target_service, producer topic. **`hint_kind`:** optional `symbol`|`route`|`client`|`producer`.
 | `status` | Action |
 | -------- | ------ |
 | `one` | `describe(id=node.id)` |
-| `many` | pick from candidates, then `describe` |
+| `many` | pick from `candidates`, then `describe` |
 | `none` | fall back to `search(query=…)` or `Grep` |
 Prefer `resolve` → `describe(id=…)` over `describe(fqn=…)` when FQN may collide.
-### Tool signatures summary
+### Tool signatures
-- **`search`** — `query`, `table` (`java`|`sql`|`yaml`|`all`), `hybrid` (bool), `limit` (default 5), `offset`, `path_contains`, optional `filter` (symbol-applicable only).
-- **`find`** — `kind` (`symbol`|`route`|`client`|`producer`), **`filter`** (required object), `limit` (default 25), `offset`.
-- **`describe`** — `id` (any kind) or `fqn` (symbol only; `id` wins). Returns node + `edge_summary` (stored + composed keys).
+- **`search`** — `query`, `table` (`java`|`sql`|`yaml`|`all`), `hybrid` (bool), `limit` (5), `offset`, `path_contains`, optional `filter` (symbol only).
+- **`find`** — `kind` (`symbol`|`route`|`client`|`producer`), **`filter`** (required), `limit` (25), `offset`.
+- **`describe`** — `id` (any) or `fqn` (symbol; `id` wins). Returns node + `edge_summary`.
 - **`resolve`** — `identifier`, optional `hint_kind`.
-### Decision tree
+### Ontology glossary
-| User asks… | First step | Follow-up |
-| ---------- | ---------- | --------- |
-| Identifier-shaped string | `resolve` | `describe` → `neighbors` |
-| Fuzzy / NL "where is X" | `search` | `describe` → `neighbors` |
-| All controllers in S | `find(kind="symbol", filter={"microservice":"S","role":"CONTROLLER"})` | `neighbors` |
-| Interfaces in S | `find(..., filter={"microservice":"S","symbol_kind":"interface"})` | `neighbors`/`describe` |
-| HTTP / messaging entry points | `find(kind="route", filter={…})` | `describe` |
-| Outbound HTTP clients | `find(kind="client", filter={…})` | `neighbors(..., "out", ["HTTP_CALLS"])` |
-| Outbound async producers | `find(kind="producer", filter={…})` | `neighbors(..., "out", ["ASYNC_CALLS"])` |
-| Who calls method M? | `resolve` → `neighbors("in", ["CALLS"])` | — |
-| What does M call? | same | `neighbors(ids, "out", ["CALLS"])` |
-| Who hits this route? | route id | `neighbors(ids, "in", ["HTTP_CALLS","ASYNC_CALLS","EXPOSES"])` |
-| Handler for route | `neighbors(route_id, "in", ["EXPOSES"])` | — |
-| Who implements T? | `neighbors(type_id, "in", ["IMPLEMENTS"])` | — |
-| Who injects T? | `neighbors(type_id, "in", ["INJECTS"])` | — |
-| Impact of changing X? | bounded `neighbors` traversal (depth ≤2) | — |
-### Roles
-| Role | Meaning |
-| ---- | ------- |
-| `CONTROLLER` | HTTP / messaging entry point |
-| `SERVICE` | Business logic orchestration |
-| `REPOSITORY` | Data access |
-| `COMPONENT` | General Spring component |
-| `CONFIG` | `@Configuration` class |
-| `ENTITY` | JPA / persistence entity |
-| `CLIENT` | Outbound call wrapper |
-| `MAPPER` | Data mapper / converter |
-| `DTO` | Data transfer object |
-| `OTHER` | Infrastructure / utility / unclassified |
-### Capabilities
-`MESSAGE_LISTENER`, `MESSAGE_PRODUCER`, `HTTP_CLIENT`, `SCHEDULED_TASK`, `EXCEPTION_HANDLER`.
-### Symbol kinds
-`class`, `interface`, `enum`, `record`, `annotation`, `method`, `constructor`.
----
-## File-System Search Reference
-### Glob patterns
-Use `Glob` to find files by name or path pattern:
-- `**/*.java` — all Java files
-- `**/*Controller*.java` — controller files
-- `**/application*.yml` — Spring config files
-- `**/*Test*.java` — test files
-### Grep patterns
-Use `Grep` for content search across files:
-- Class declarations: `class ClassName`
-- Method usage: `methodName(`
-- Annotations: `@RequestMapping`, `@Service`, etc.
-- Import statements: `import com.example.ClassName`
-- Configuration keys: `spring.datasource`
-### Reading files
-- Use `Read` with `offset`/`limit` for large files — read relevant sections.
-- For images/PDFs, `Read` handles them natively.
-- Prefer reading excerpts to dumping entire files.
+**Roles:** `CONTROLLER` (HTTP/messaging entry) | `SERVICE` (business logic) | `REPOSITORY` (data access) | `COMPONENT` (Spring component) | `CONFIG` (`@Configuration`) | `ENTITY` (JPA/persistence) | `CLIENT` (outbound wrapper) | `MAPPER` (converter) | `DTO` | `OTHER` (infra/utility).
+**Capabilities:** `MESSAGE_LISTENER`, `MESSAGE_PRODUCER`, `HTTP_CLIENT`, `SCHEDULED_TASK`, `EXCEPTION_HANDLER`.
+**Symbol kinds:** `class`, `interface`, `enum`, `record`, `annotation`, `method`, `constructor`.
 ---
 ## Recovery Playbook
+**After two failed attempts on the same intent, stop and report what was tried and what failed.**
 | Symptom | Fix |
 | ------- | --- |
-| Graph returns empty | Verify with `Grep`/`Read` against source files; index may be stale |
+| Graph returns empty | Verify with `Grep`/`Read` — index may be stale |
 | `neighbors` validation error | Ensure `direction` and `edge_types` are set |
-| Cannot find symbol via graph | Try `resolve`, then `search`, then `find` with `fqn_contains`; fallback `Grep` |
-| `find` returns too much | Add `microservice`, `fqn_contains`, `path_contains`, `topic_contains` |
-| Empty `search` | Try `table="all"`; `find` with `fqn_contains`; `Grep` directly |
-| Empty results across tools | Index missing/stale → `Grep`/`Glob`/`Read`; ask operator to rebuild |
+| Cannot find symbol via graph | `resolve` → `search` → `find` with `fqn_contains`; fallback `Grep` |
+| `find` too broad | Add `microservice`, `fqn_contains`, `path_contains`, `topic_contains` |
+| Empty `search` | Try `table="all"`; `find` with `fqn_contains`; `Grep` |
+| Empty across tools | Index missing/stale → `Grep`/`Glob`/`Read`; ask operator to rebuild |
 | Graph vs file disagree | Trust the file; report stale index |
-| Mixed composed families on one id | Split calls — type keys need type id; override keys need method id |
-| File not found via Glob | Try broader pattern; check working directory |
-| Grep too many results | Narrow with `path_filter`, `glob`, or more specific pattern |
-| Grep no results | Broaden pattern; check working directory; try alternate terms |
-| Two failed graph attempts | Stop graph attempts, switch to file-system tools, report |
-After two failed attempts on the same intent, stop and report what was tried and what failed.
+| Mixed composed families on one id | Split — type keys need type id; override keys need method id |
+| `Glob`/`Grep` too broad / no results | Narrow (`path_filter`, `glob`, dir prefix) / broaden pattern, check cwd |
 ---
 ## Workflow Patterns
-### Pattern: "explain feature X"
-1. `search` with a short query → pick top hits
-2. `describe` on chosen ids → read edge_summary
-3. `neighbors` with targeted edge_types → trace the flow
-4. Stop when you can answer the question
-### Pattern: "where is X used?"
-1. `resolve` for exact match, or `search` for fuzzy
-2. If graph finds it: `neighbors("in", ["CALLS","INJECTS","IMPLEMENTS"])`
-3. If graph misses it: `Grep` for the symbol name across the codebase
-4. Report all usage sites found
-### Pattern: "find all Y in the codebase"
-1. If structural: `find(kind=…, filter={…})` for exact listing
-2. If textual: `Grep` for the pattern
-3. If broad: `Glob` for files + `Grep` for content
-4. Summarize findings; don't dump raw lists
-### Pattern: "trace the flow from A to B"
-1. Resolve both endpoints
-2. Walk `CALLS` / `EXPOSES` / `HTTP_CALLS` edges from A
-3. Use `Grep` to fill gaps where graph index is incomplete
-4. Report the trace with file:line references
+- **"Explain feature X":** `search` short query → pick top hits → `describe` → `neighbors` with targeted edges → stop when answered.
+- **"Where is X used?":** `resolve` (exact) or `search` (fuzzy) → `neighbors("in", ["CALLS","INJECTS","IMPLEMENTS"])` → `Grep` the symbol name as fallback → report all sites.
+- **"Find all Y":** structural → `find(kind=…, filter={…})`; textual → `Grep`; broad → `Glob`+`Grep`. Summarize, don't dump.
+- **"Trace flow A→B":** resolve both → walk `CALLS`/`EXPOSES`/`HTTP_CALLS` from A → `Grep` gaps → report with file:line.

java_codebase_rag/install_data/skills/explore-codebase/SKILL.md CHANGED Viewed

@@ -7,9 +7,7 @@ description: "MUST BE USED PROACTIVELY. Universal read-only codebase exploration
 Read-only exploration combining **java-codebase-rag graph navigation** with **broad file-system search**.
-## When to use
-Any time you need to search, locate, navigate, or explore the codebase. **Do NOT use when** the answer is already in open context or for a single known file — read that file directly.
+Use any time you must search, locate, navigate, or explore. **Do NOT use when** the answer is already in context or for a single known file — read it directly.
 ## Core Principles
@@ -19,20 +17,9 @@ Any time you need to search, locate, navigate, or explore the codebase. **Do NOT
 ## Tool Inventory
-### Graph tools (java-codebase-rag MCP)
-`search`, `find`, `describe`, `neighbors`, `resolve`.
-**Node kinds:** `Symbol` (types/methods), `Route` (HTTP/messaging entry points), `Client` (outbound HTTP), `Producer` (outbound async).
-**Indexed content:** Java sources + SQL + YAML (`table`: `java`, `sql`, `yaml`, or `all`).
-### File-system tools
-- **Grep** — content search by pattern/regex
-- **Glob** — find files by name/path pattern (`**/*.java`, `**/*Controller*.java`, `**/application*.yml`)
-- **Read** — read files (`offset`/`limit` for large files)
-### Other: **Bash** (read-only: `git log`, `git blame`, `ls`, `find`), **WebSearch**/**WebFetch** (external lookups)
+- **Graph (java-codebase-rag MCP):** `search`, `find`, `describe`, `neighbors`, `resolve`. Node kinds: `Symbol` (types/methods), `Route` (HTTP/messaging entry points), `Client` (outbound HTTP), `Producer` (outbound async). Indexed content: Java + SQL + YAML (`table`: `java`, `sql`, `yaml`, `all`).
+- **File-system:** `Grep` (content/regex), `Glob` (name/path patterns), `Read` (`offset`/`limit` for large files).
+- **Other:** `Bash` (read-only: `git log`, `git blame`, `ls`, `find`), `WebSearch`/`WebFetch`.
 ---
@@ -52,22 +39,20 @@ Any time you need to search, locate, navigate, or explore the codebase. **Do NOT
 | Who hits this route? | route id | `neighbors(ids, "in", ["HTTP_CALLS","ASYNC_CALLS","EXPOSES"])` |
 | Handler for route | route id | `neighbors(ids, "in", ["EXPOSES"])` |
 | Who implements/injects T? | type symbol id | `neighbors(ids, "in", ["IMPLEMENTS"])` or `["INJECTS"]` |
-| Impact of changing X? | bounded `neighbors` `in` loop with `CALLS`, `INJECTS`, … | `Grep` fallback |
-| Find files matching pattern | `Glob` | `Read` |
-| Search for text in files | `Grep` | `Read` |
+| Impact of changing X? | bounded `neighbors` `in` loop (`CALLS`, `INJECTS`, …) | `Grep` fallback |
+| Find files / text | `Glob` / `Grep` | `Read` |
 | Who changed X and when? | Bash: `git log`/`git blame` | — |
-| "How is this configured?" | `Glob` + `Grep` for config keys; `search(query=…, table="yaml")` | `Read` sections |
+| "How is this configured?" | `Glob` + `Grep`; `search(query=…, table="yaml")` | `Read` sections |
-**Escalation:** ① Most targeted tool first → ② Fall back gracefully (graph empty → `Grep`/`Glob`) → ③ Cross-validate (graph vs file disagree → **trust the file**).
+**Escalation:** ① Most targeted tool first → ② fall back gracefully (graph empty → `Grep`/`Glob`) → ③ cross-validate (graph vs file disagree → **trust the file**).
-**Rules of thumb:** Structure beats vector for exact questions (`resolve`/`find`+`neighbors`); vector beats structure for fuzzy discovery (`search`); file-system beats stale index.
+**Rules of thumb:** structure beats vector for exact questions (`resolve`/`find`+`neighbors`); vector beats structure for fuzzy discovery (`search`); file-system beats stale index.
 ---
 ## Graph Navigation Reference (java-codebase-rag MCP)
-**Ontology: 17** — if results look structurally wrong or empty across tools, the index may be missing or stale; ask the operator to rebuild.
-Responses may include `hints_structured` (suggested next calls) and `advisories` — advisory only; ignore when `success` is false.
+**Ontology: 17.** If results look structurally wrong or empty across tools, the index may be missing/stale — ask the operator to rebuild. Responses may carry `hints_structured` (suggested next calls) and `advisories` — advisory only; ignore when `success` is false.
 ### Forced reasoning preamble (every MCP call)
@@ -76,17 +61,13 @@ Q-class: <semantic | structured | inspect | walk>
 Pick: <search|find|describe|neighbors|resolve>  Why: <≤8 words>
 ```
-### Workflow: locate → inspect → walk
-1. **Locate** — `resolve` for identifier-shaped; `search` for NL/code fragments; `find` for structured `NodeFilter`.
-2. **Inspect** — `describe(id)` for full record + `edge_summary`.
-3. **Walk** — `neighbors` in a loop with explicit `direction` and `edge_types`.
+**Workflow:** locate (`resolve`/`search`/`find`) → inspect (`describe`) → walk (`neighbors`, explicit `direction` + `edge_types`).
 ### Edge taxonomy
 Use these strings **verbatim** in `neighbors(..., edge_types=[...])`.
-**Stored edges (one hop):**
+**Stored (one hop):**
 | Edge type | Semantics |
 | --------- | --------- |
@@ -97,35 +78,27 @@ Use these strings **verbatim** in `neighbors(..., edge_types=[...])`.
 | `EXPOSES` | Method Symbol → Route (handler exposes route) |
 | `HTTP_CALLS`, `ASYNC_CALLS` | Cross-service: Client/Producer → Route |
-**Composed edges — type Symbol origin (`direction="out"` only):**
-`DECLARES.DECLARES_CLIENT` — members' HTTP clients | `DECLARES.DECLARES_PRODUCER` — members' async producers | `DECLARES.EXPOSES` — members' exposed routes
-**Composed edges — non-static method Symbol origin (`direction="out"` only):**
+**Composed (`direction="out"` only):** type-Symbol origin — `DECLARES.DECLARES_CLIENT` (members' HTTP clients), `DECLARES.DECLARES_PRODUCER` (async producers), `DECLARES.EXPOSES` (exposed routes). Non-static-method-Symbol origin — `OVERRIDDEN_BY`, `OVERRIDDEN_BY.DECLARES_CLIENT`, `OVERRIDDEN_BY.DECLARES_PRODUCER`, `OVERRIDDEN_BY.EXPOSES`.
-`OVERRIDDEN_BY` — concrete overrider methods | `OVERRIDDEN_BY.DECLARES_CLIENT` | `OVERRIDDEN_BY.DECLARES_PRODUCER` | `OVERRIDDEN_BY.EXPOSES`
+> Don't mix `DECLARES.*` and `OVERRIDDEN_BY.*` in one list. Large composed counts in `edge_summary` → raise `limit` or issue separate calls.
-> Do not mix `DECLARES.*` and `OVERRIDDEN_BY.*` in one `edge_types` list. When `edge_summary` shows large composed counts, raise `limit` or issue separate calls per key.
+**Argument shapes — JSON, not stringified:** `edge_types=["CALLS"]` not `"CALLS"`; `filter={"role":"CONTROLLER"}` not nested string; `ids=["sym:…","sym:…"]` not comma-joined. Omit unneeded keys. Empty `""` is often a real filter that matches nothing.
-### Argument shapes
+**Node id prefixes:** Symbol `sym:`, Route `route:`/`r:`, Client `client:`/`c:`, Producer `producer:`/`p:`. Use exact ids from prior calls.
-**JSON, not stringified JSON:** `edge_types=["CALLS"]` not `"CALLS"`; `filter={"role":"CONTROLLER"}` not nested string; `ids=["sym:…","sym:…"]` not comma-joined. Omit keys you don't need. Empty string `""` is a real filter that matches nothing.
-**Node id prefixes:** Symbol `sym:`, Route `route:`/`r:`, Client `client:`/`c:`, Producer `producer:`/`p:`. Use exact ids from previous calls.
-**Symbol FQNs:** `<package>.<Type>[.<NestedType>]#<methodName>(<SimpleType1>,<SimpleType2>,…)`. Generics erased, no spaces after commas. No-arg: `()`. Constructor: `#<init>(…)`.
+**Symbol FQNs:** `<package>.<Type>[.<NestedType>]#<methodName>(<SimpleType1>,<SimpleType2>,…)`. Generics erased, no spaces after commas. No-arg `()`. Constructor `#<init>(…)`.
 ### `neighbors` — required every time
-- **`direction`**: `"in"` or `"out"` (no default). **`edge_types`**: non-empty list.
-- **Batching:** multiple `ids` expand first; `limit`/`offset` slice the **merged** edge list — raise `limit` when batching.
-- **`CALLS` edges:** `attrs.resolved=false` = external (JDK/Spring), not missing. **`include_unresolved=True`** (`out` only) interleaves unresolved call sites; mutually exclusive with `edge_filter`. **`dedup_calls=True`** collapses identical (origin, callee) pairs.
-- **`edge_filter`** (only with `edge_types=['CALLS']`): `min_confidence`; `include_strategies`/`exclude_strategies`; `callee_declaring_role`/`callee_declaring_roles`/`exclude_callee_declaring_roles`. Note: use `edge_filter.callee_declaring_role` for callee stereotype filtering, not `filter.role` which filters the neighbor node.
-- **Cross-service edges:** read `attrs.confidence` and `attrs.match` — low confidence or `unresolved`/`phantom`/`ambiguous` = resolver signal, not ground truth.
+- **`direction`** `"in"`/`"out"` (no default); **`edge_types`** non-empty list.
+- **Batching:** multiple `ids` expand first; `limit`/`offset` slice the **merged** list — raise `limit` when batching.
+- **`CALLS`:** `attrs.resolved=false` = external (JDK/Spring), not missing. `include_unresolved=True` (`out` only) interleaves unresolved sites; exclusive with `edge_filter`. `dedup_calls=True` collapses identical (origin, callee) pairs.
+- **`edge_filter`** (only with `edge_types=['CALLS']`): `min_confidence`; `include_strategies`/`exclude_strategies`; `callee_declaring_role`/`callee_declaring_roles`/`exclude_callee_declaring_roles` (callee stereotype filter — not `filter.role`, which filters the neighbor node).
+- **Cross-service edges:** read `attrs.confidence`/`attrs.match` — low confidence or `unresolved`/`phantom`/`ambiguous` = resolver signal, not ground truth.
 ### NodeFilter (`find`, `search.filter`, `neighbors.filter`)
-For `find`, `filter` is required — `{}` means no predicates. **Strict frame:** unknown keys or inapplicable populated fields → `success=false`; invalid enum values (e.g. wrong case) are rejected earlier at the schema layer with the valid set listed.
+For `find`, `filter` is required — `{}` = no predicates. **Strict frame:** unknown keys or inapplicable populated fields → `success=false`; invalid enums rejected at the schema layer (valid set listed).
 | Applicable to | Keys |
 | ------------- | ---- |
@@ -135,12 +108,11 @@ For `find`, `filter` is required — `{}` means no predicates. **Strict frame:**
 | **client** only | `source_layer`, `client_kind`, `target_service`, `target_path_contains`, `http_method` |
 | **producer** only | `source_layer`, `producer_kind`, `topic_contains` |
-Substring fields (`fqn_contains`, `path_contains`, `target_path_contains`, `topic_contains`) match literally via `CONTAINS` — no `*`/`?` metacharacters; use `search(query=…)` for ranked text.
+Substring fields (`fqn_contains`, `path_contains`, `target_path_contains`, `topic_contains`) match literally via `CONTAINS` — no `*`/`?`; use `search(query=…)` for ranked text.
 ### `resolve` — identifier lookup
-**Input:** FQN/suffix, `sym:`/`route:`/`client:`/`producer:` id, `METHOD /path`, route path, client target_service, producer topic.
-**`hint_kind`:** optional `symbol`|`route`|`client`|`producer` (narrows generators).
+**Input:** FQN/suffix, `sym:`/`route:`/`client:`/`producer:` id, `METHOD /path`, route path, client target_service, producer topic. **`hint_kind`:** optional `symbol`|`route`|`client`|`producer`.
 | `status` | Action |
 | -------- | ------ |
@@ -150,55 +122,44 @@ Substring fields (`fqn_contains`, `path_contains`, `target_path_contains`, `topi
 Prefer `resolve` → `describe(id=…)` over `describe(fqn=…)` when FQN may collide.
-### Tool signatures summary
+### Tool signatures
-- **`search`** — `query`, `table` (`java`|`sql`|`yaml`|`all`), `hybrid` (bool), `limit` (default 5), `offset`, `path_contains`, optional `filter` (symbol-applicable only).
-- **`find`** — `kind` (`symbol`|`route`|`client`|`producer`), **`filter`** (required object), `limit` (default 25), `offset`.
-- **`describe`** — `id` (any kind) or `fqn` (symbol only; `id` wins). Returns node + `edge_summary` (stored + composed keys).
+- **`search`** — `query`, `table` (`java`|`sql`|`yaml`|`all`), `hybrid` (bool), `limit` (5), `offset`, `path_contains`, optional `filter` (symbol only).
+- **`find`** — `kind` (`symbol`|`route`|`client`|`producer`), **`filter`** (required), `limit` (25), `offset`.
+- **`describe`** — `id` (any) or `fqn` (symbol; `id` wins). Returns node + `edge_summary`.
 - **`resolve`** — `identifier`, optional `hint_kind`.
 ### Ontology glossary
-**Roles:** `CONTROLLER` | `SERVICE` | `REPOSITORY` | `COMPONENT` | `CONFIG` | `ENTITY` | `CLIENT` | `MAPPER` | `DTO` | `OTHER`.
-Exclude `DTO`, `OTHER`, `MAPPER` with `exclude_roles` when tracing business logic. On `CALLS` out: `edge_filter={"exclude_callee_declaring_roles":["OTHER"]}` drops framework calls.
+**Roles:** `CONTROLLER` | `SERVICE` | `REPOSITORY` | `COMPONENT` | `CONFIG` | `ENTITY` | `CLIENT` | `MAPPER` | `DTO` | `OTHER`. Exclude `DTO`/`OTHER`/`MAPPER` via `exclude_roles` when tracing business logic; on `CALLS` out, `edge_filter={"exclude_callee_declaring_roles":["OTHER"]}` drops framework calls.
 **Capabilities:** `MESSAGE_LISTENER`, `MESSAGE_PRODUCER`, `HTTP_CLIENT`, `SCHEDULED_TASK`, `EXCEPTION_HANDLER`.
 **Symbol kinds:** `class`, `interface`, `enum`, `record`, `annotation`, `method`, `constructor`.
-**Route frameworks:** `spring_mvc`, `webflux`. (Route *kinds* are `http_endpoint`, `http_consumer`, `kafka_topic`, `rabbit_queue`, `jms_destination`, `stream_binding`.)
-**Client kinds:** `feign_method`, `rest_template`, `web_client`. **Producer kinds:** `kafka_send`, `stream_bridge_send`. **Source layers (client/producer):** `builtin`, `layer_a_meta`, `layer_b_ann`, `layer_b_fqn`, `layer_c_source`.
-**Match types:** `cross_service`, `intra_service`, `ambiguous`, `phantom`, `unresolved`.
+**Route frameworks:** `spring_mvc`/`webflux` (HTTP), `kafka`/`rabbitmq`/`jms`/`stream` (messaging), `feign` (client mirrors). (Route *kinds*: `http_endpoint`, `http_consumer`, `kafka_topic`, `rabbit_queue`, `jms_destination`, `stream_binding`.) **Client kinds:** `feign_method`, `rest_template`, `web_client`. **Producer kinds:** `kafka_send`, `stream_bridge_send`. **Source layers (client/producer):** `builtin`, `layer_a_meta`, `layer_b_ann`, `layer_b_fqn`, `layer_c_source`. **Match types:** `cross_service`, `intra_service`, `ambiguous`, `phantom`, `unresolved`.
 ---
 ## Recovery Playbook
-**After two failed attempts on the same intent, stop and report tool name, args, and response snippet.**
+**After two failed attempts on the same intent, stop and report tool, args, and response snippet.**
 | Symptom | Fix |
 | ------- | --- |
-| `neighbors` validation error | Add both `direction` and `edge_types` explicitly |
-| Empty `neighbors` | Read `describe.edge_summary`; check edge type and direction |
+| `neighbors` validation error | Add both `direction` and `edge_types` |
+| Empty `neighbors` | Read `describe.edge_summary`; check edge type + direction |
 | Cannot find symbol | `resolve`/`search`; `find` with `fqn_contains`; fallback `Grep` |
-| `find` returns too much | Add `microservice`, `fqn_contains`, `path_contains`, `topic_contains` |
-| Empty `search` | Try `table="all"`; `find` with `fqn_contains`; `Grep` directly |
-| Empty results across tools | Index missing/stale → `Grep`/`Glob`/`Read`; ask operator to rebuild |
+| `find` too broad | Add `microservice`, `fqn_contains`, `path_contains`, `topic_contains` |
+| Empty `search` | Try `table="all"`; `find` with `fqn_contains`; `Grep` |
+| Empty across tools | Index missing/stale → `Grep`/`Glob`/`Read`; ask operator to rebuild |
 | Graph vs file disagree | **Trust the file**; report stale index |
-| Mixed composed families on one id | Split calls — type keys need type id; override keys need method id |
-| `Glob`/`Grep` too many results | Narrow pattern; add directory prefix or `path_filter` |
-| `Grep` no results | Broaden pattern; check working directory; try alternate terms |
+| Mixed composed families on one id | Split — type keys need type id; override keys need method id |
+| `Glob`/`Grep` too broad | Narrow pattern; add directory prefix / `path_filter` |
 ---
 ## Workflow Patterns
-**"Explain feature X":** `search` → pick 1–3 hits → `describe` → `neighbors` with targeted edges → stop when answered.
-**"Where is X used?":** `resolve`/`search` → `neighbors("in", ["CALLS","INJECTS","IMPLEMENTS"])` → `Grep` fallback → report all sites with file:line.
-**"Find all Y":** Structural → `find(kind=…, filter={…})`. Textual → `Grep`. Broad → `Glob` + `Grep`. Summarize, don't dump.
-**"Trace flow from A to B":** Resolve both → walk `CALLS`/`EXPOSES`/`HTTP_CALLS` from A → `Grep` gaps → report with file:line.
-**"How is this configured?":** `Glob` for `**/application*.yml` → `Grep` for key → `Read` sections → `search(query=…, table="yaml")` supplement.
+- **"Explain feature X":** `search` → pick 1–3 hits → `describe` → `neighbors` with targeted edges → stop when answered.
+- **"Where is X used?":** `resolve`/`search` → `neighbors("in", ["CALLS","INJECTS","IMPLEMENTS"])` → `Grep` fallback → report sites with file:line.
+- **"Find all Y":** structural → `find(kind=…, filter={…})`; textual → `Grep`; broad → `Glob`+`Grep`. Summarize, don't dump.
+- **"Trace flow A→B":** resolve both → walk `CALLS`/`EXPOSES`/`HTTP_CALLS` from A → `Grep` gaps → report with file:line.
+- **"How is this configured?":** `Glob` `**/application*.yml` → `Grep` the key → `Read` sections → `search(query=…, table="yaml")` supplement.

java-codebase-rag 0.8.0__py3-none-any.whl → 0.9.0__py3-none-any.whl

java-codebase-rag 0.8.0py3-none-any.whl → 0.9.0py3-none-any.whl