java-codebase-rag 0.6.5__py3-none-any.whl → 0.6.7__py3-none-any.whl

java_codebase_rag/cli.py

@@ -580,11 +580,33 @@ def _cmd_update(args: argparse.Namespace) -> int:
     )
 
 
+def _rm_any(path: Path) -> None:
+    """Remove ``path`` whether it is a regular file, directory, or symlink.
+
+    ``code_graph.lbug`` is a single regular file in this repo, but kuzu may lay
+    the graph out as a directory; ``cocoindex.db`` is always a directory.
+    ``shutil.rmtree`` is a silent no-op on a regular file and ``Path.unlink``
+    raises ``IsADirectoryError`` on a directory, so a type-blind delete left
+    index artifacts on disk (issue #346). A symlinked directory is unlinked, not
+    recursed into, so the link target is never followed. Failures are warned to
+    stderr rather than swallowed, so erase does not report success while leaving
+    an artifact behind (the exact failure mode issue #346 reported).
+    """
+    try:
+        if path.is_dir() and not path.is_symlink():
+            shutil.rmtree(path)
+        elif path.exists() or path.is_symlink():
+            path.unlink(missing_ok=True)
+    except OSError as exc:
+        print(f"warning: failed to remove {path}: {exc}", file=sys.stderr)
+
+
 def _cmd_erase(args: argparse.Namespace) -> int:
     cfg = _resolved_from_ns(args)
     _startup_hints(cfg)
     cfg.apply_to_os_environ()
-    to_describe: list[Path] = [cfg.ladybug_path, cfg.cocoindex_db]
+    graph_hashes_path = cfg.ladybug_path.parent / ".graph_hashes.json"
+    to_describe: list[Path] = [cfg.ladybug_path, cfg.cocoindex_db, graph_hashes_path]
     if cfg.index_dir.is_dir():
         try:
             import lancedb
@@ -621,13 +643,15 @@ def _cmd_erase(args: argparse.Namespace) -> int:
             )
         elif drop.returncode != 0:
             print(clip(drop.stderr, 4000), file=sys.stderr)
-        if cfg.ladybug_path.exists():
-            shutil.rmtree(cfg.ladybug_path, ignore_errors=True)
-        if cfg.cocoindex_db.exists():
-            try:
-                cfg.cocoindex_db.unlink()
-            except OSError:
-                pass
+        # Remove the LadybugDB graph, the cocoindex state store, and the graph
+        # builder's content-hash store. Each is removed by type (see _rm_any):
+        # code_graph.lbug is a file here but may be a dir under kuzu, while
+        # cocoindex.db is a directory — a type-blind delete silently no-oped on
+        # one or the other, and .graph_hashes.json was never targeted at all
+        # (issue #346).
+        _rm_any(cfg.ladybug_path)
+        _rm_any(cfg.cocoindex_db)
+        _rm_any(graph_hashes_path)
         if cfg.index_dir.is_dir():
             try:
                 import lancedb

{java_codebase_rag-0.6.5.dist-info → java_codebase_rag-0.6.7.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: java-codebase-rag
-Version: 0.6.5
+Version: 0.6.7
 Summary: MCP server for semantic + structural search over Java codebases
 Author: HumanBean17
 License-Expression: MIT
@@ -18,7 +18,7 @@ Classifier: Topic :: Software Development :: Libraries
 Requires-Python: >=3.11
 Description-Content-Type: text/markdown
 License-File: LICENSE
-Requires-Dist: cocoindex[lancedb]<2,>=1.0.0a43
+Requires-Dist: cocoindex[lancedb]<2,>=1.0.7
 Requires-Dist: ladybug<0.18,>=0.17.1
 Requires-Dist: lancedb<0.31,>=0.25.3
 Requires-Dist: mcp<2,>=1.27.0

{java_codebase_rag-0.6.5.dist-info → java_codebase_rag-0.6.7.dist-info}/RECORD

@@ -16,7 +16,7 @@ search_lancedb.py,sha256=ga_qySeCzA6hCibxUPXpCbTxW9mCjTdwirMhMhfNCz4,36801
 server.py,sha256=DcJwocSknBy0vwsUvYiC5hr-hrD_rRT-u9_DmuRTC9k,35035
 java_codebase_rag/__init__.py,sha256=AbpHGcgLb-kRsJGnwFEktk7uzpZOCcBY74-YBdrKVGs,1
 java_codebase_rag/_fdlimit.py,sha256=WroFdfSNbcriKok6q8znTf74dqlznxea_1Fd5bHl_3o,1930
-java_codebase_rag/cli.py,sha256=TIrKNQMxu3_dSF2LXKsRKWY5RqRnSLQMrbKAoN4uQBQ,38698
+java_codebase_rag/cli.py,sha256=zMZcjVKRgfv7VpTb0h1vjGGzPXY4NT2Uqyz77uysc0c,40085
 java_codebase_rag/cli_format.py,sha256=CT7-xdwZ0bMCdP68_UOwkvm-mnLluU3LutlM-mDNk60,1839
 java_codebase_rag/cli_progress.py,sha256=q6Wh97yzLGs1B8UFk_WAKivfQu7Y5RnUUE-T2YHWkIs,3237
 java_codebase_rag/config.py,sha256=bfwYI4R8PU9YV_M4r8-03iaUZ_0TW-qN_NuhIsDXy2M,18769
@@ -26,9 +26,9 @@ java_codebase_rag/pipeline.py,sha256=ydNktEGL1YniAjJsr37yKBo_bGV4cN_LTGVTmmrsrZw
 java_codebase_rag/progress.py,sha256=2IxdMALDM0wAQCyJrrfZ975zM_85C-4BfHxf4AtYifE,23212
 java_codebase_rag/install_data/agents/explorer-rag-enhanced.md,sha256=BkdQpBEWqSdvGHgbqMdRb5CWfEiFRJK4Dgqbyal3l6s,14551
 java_codebase_rag/install_data/skills/explore-codebase/SKILL.md,sha256=YkRnrM7Wh5E8raFjAW3RrN2V9-ov8upaGC3UdpSx6U8,12346
-java_codebase_rag-0.6.5.dist-info/licenses/LICENSE,sha256=gxvtiHtuviR_q8ZAjWw-QTcF3DyPzg6ZY-lQrr8OPpw,1068
-java_codebase_rag-0.6.5.dist-info/METADATA,sha256=jbKFqnBab9XoMAtIhfX-A9n0ztxhOEPrNcuH5G9qrEM,17242
-java_codebase_rag-0.6.5.dist-info/WHEEL,sha256=aeYiig01lYGDzBgS8HxWXOg3uV61G9ijOsup-k9o1sk,91
-java_codebase_rag-0.6.5.dist-info/entry_points.txt,sha256=wsPZwot0Ui4JI3TIgW8LcbN8bNtKFbwQAlHAAJXfYgQ,117
-java_codebase_rag-0.6.5.dist-info/top_level.txt,sha256=syQgi8XPBwY2ws_NZ1uRCxTf_s41NpshwEHNdcdnk3A,245
-java_codebase_rag-0.6.5.dist-info/RECORD,,
+java_codebase_rag-0.6.7.dist-info/licenses/LICENSE,sha256=gxvtiHtuviR_q8ZAjWw-QTcF3DyPzg6ZY-lQrr8OPpw,1068
+java_codebase_rag-0.6.7.dist-info/METADATA,sha256=Hnwc5Zpo53La7PXgldTTlVl87xRGG5KvDTky6ufxyQM,17239
+java_codebase_rag-0.6.7.dist-info/WHEEL,sha256=aeYiig01lYGDzBgS8HxWXOg3uV61G9ijOsup-k9o1sk,91
+java_codebase_rag-0.6.7.dist-info/entry_points.txt,sha256=wsPZwot0Ui4JI3TIgW8LcbN8bNtKFbwQAlHAAJXfYgQ,117
+java_codebase_rag-0.6.7.dist-info/top_level.txt,sha256=syQgi8XPBwY2ws_NZ1uRCxTf_s41NpshwEHNdcdnk3A,245
+java_codebase_rag-0.6.7.dist-info/RECORD,,