ivoryos 1.1.0__py3-none-any.whl → 1.2.0b1__py3-none-any.whl

ivoryos/utils/serilize.py

@@ -0,0 +1,203 @@
+import ast
+import json
+import inspect
+import logging
+from typing import get_type_hints, Union, Optional, get_origin, get_args
+import sys
+
+import flask
+
+from example.abstract_sdl_example.abstract_balance import AbstractBalance
+from example.abstract_sdl_example.abstract_pump import AbstractPump
+
+
+class ScriptAnalyzer:
+    def __init__(self):
+        self.primitive_types = {
+            'int', 'float', 'str', 'bool', 'tuple', 'list'
+        }
+        self.type_mapping = {
+            int: 'int',
+            float: 'float',
+            str: 'str',
+            bool: 'bool',
+            tuple: 'tuple',
+            list: 'list'
+        }
+
+    def extract_type_from_hint(self, type_hint):
+        """Extract primitive types from type hints, handling Union and Optional"""
+        if type_hint is None:
+            return None
+
+        # Handle Union types (including Optional which is Union[T, None])
+        origin = get_origin(type_hint)
+        if origin is Union:
+            args = get_args(type_hint)
+            types = []
+            for arg in args:
+                if arg is type(None):  # Skip None type
+                    continue
+                if arg in self.type_mapping:
+                    types.append(self.type_mapping[arg])
+                elif hasattr(arg, '__name__') and arg.__name__ in self.primitive_types:
+                    types.append(arg.__name__)
+                else:
+                    return None  # Non-primitive type found
+            return types if types else None
+
+        # Handle direct primitive types
+        if type_hint in self.type_mapping:
+            return [self.type_mapping[type_hint]]
+        elif hasattr(type_hint, '__name__') and type_hint.__name__ in self.primitive_types:
+            return [type_hint.__name__]
+        else:
+            return None  # Non-primitive type
+
+
+    def analyze_method(self, method):
+        """Analyze a single method and extract its signature"""
+        try:
+            sig = inspect.signature(method)
+            type_hints = get_type_hints(method)
+
+            parameters = []
+            type_hint_warning = False
+            user_input_params = []
+
+            for param_name, param in sig.parameters.items():
+                if param_name == 'self':
+                    continue
+
+                param_info = {"name": param_name}
+
+                # Get type hint
+                if param_name in type_hints:
+                    type_list = self.extract_type_from_hint(type_hints[param_name])
+                    if type_list is None:
+                        type_hint_warning = True
+                        user_input_params.append(param_name)
+                        param_info["type"] = ""
+                    else:
+                        param_info["type"] = type_list[0] if len(type_list) == 1 else type_list
+                else:
+                    type_hint_warning = True
+                    user_input_params.append(param_name)
+                    param_info["type"] = ""
+
+                # Get default value
+                if param.default != inspect.Parameter.empty:
+                    param_info["default"] = param.default
+
+                parameters.append(param_info)
+
+            # Get docstring
+            docstring = inspect.getdoc(method)
+
+            method_info = {
+                "docstring": docstring or "",
+                "parameters": parameters
+            }
+
+            return method_info, type_hint_warning
+
+        except Exception as e:
+            print(f"Error analyzing method {method.__name__}: {e}")
+            return None
+
+
+    def analyze_module(self, module, exclude_names=[]):
+        """Analyze module from sys.modules and extract class instances and methods"""
+        exclude_classes = (flask.Blueprint, logging.Logger)
+        # Get all variables in the module that are class instances
+        included = {}
+        excluded = {}
+        failed = {}
+        included_with_warnings = {}
+        for name, obj in vars(module).items():
+            if (
+                    type(obj).__module__ == 'builtins'
+                    or name[0].isupper()
+                    or name.startswith("_")
+                    or isinstance(obj, exclude_classes)
+                    or name in exclude_names
+                    or not hasattr(obj, '__class__')
+            ):
+                excluded[name] = type(obj).__name__
+                continue
+
+            cls = obj.__class__
+
+            try:
+                class_methods, type_hint_warning = self.analyze_class(cls)
+                if class_methods:
+                    if type_hint_warning:
+                        included_with_warnings[name] = class_methods
+                    included[name] = class_methods
+            except Exception as e:
+                failed[name] = str(e)
+                continue
+        return included, included_with_warnings, failed, excluded
+
+    def save_to_json(self, data, output_path):
+        """Save analysis result to JSON file"""
+        with open(output_path, 'w') as f:
+            json.dump(data, f, indent=2)
+
+    def analyze_class(self, cls):
+        class_methods = {}
+        type_hint_flag = False
+        for method_name, method in inspect.getmembers(cls, predicate=callable):
+            if method_name.startswith("_") or method_name.isupper():
+                continue
+            method_info, type_hint_warning = self.analyze_method(method)
+            if type_hint_warning:
+                type_hint_flag = True
+            if method_info:
+                class_methods[method_name] = method_info
+        return class_methods, type_hint_flag
+
+    @staticmethod
+    def print_deck_snapshot(result, with_warnings, failed):
+        print("\nDeck Snapshot:")
+        print("Included Classes:")
+        for name, methods in result.items():
+            print(f"  {name}:")
+            for method_name, method_info in methods.items():
+                print(f"    {method_name}: {method_info}")
+
+        if with_warnings:
+            print("\nClasses with Type Hint Warnings:")
+            for name, methods in with_warnings.items():
+                print(f"  {name}:")
+                for method_name, method_info in methods.items():
+                    print(f"    {method_name}: {method_info}")
+
+        if failed:
+            print("\nFailed Classes:")
+            for name, error in failed.items():
+                print(f"  {name}: {error}")
+
+if __name__ == "__main__":
+    balance = AbstractBalance("re")
+    pump = AbstractPump("re")
+
+    _analyzer = ScriptAnalyzer()
+    module = sys.modules[__name__]
+    try:
+
+        result, with_warnings, failed, _ = _analyzer.analyze_module(module)
+
+        output_path = f"analysis.json"
+        _analyzer.save_to_json(result, output_path)
+
+        print(f"\nAnalysis complete! Results saved to: {output_path}")
+
+
+
+
+        _analyzer.print_deck_snapshot(result, with_warnings, failed)
+
+    except Exception as e:
+        print(f"Error: {e}")
+

ivoryos/utils/task_runner.py

@@ -72,10 +72,13 @@ class TaskRunner:
                 output = function_executable(**kwargs)
                 step.output = output
                 step.end_time = datetime.now()
+                success = True
             except Exception as e:
                 step.run_error = e.__str__()
                 step.end_time = datetime.now()
+                success = False
+                output = e.__str__()
             finally:
                 db.session.commit()
                 self.lock.release()
-            return output
+            return dict(success=success, output=output)

ivoryos/version.py

@@ -1 +1 @@
-__version__ = "1.1.0"
+__version__ = "1.2.0b1"

{ivoryos-1.1.0.dist-info → ivoryos-1.2.0b1.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: ivoryos
-Version: 1.1.0
+Version: 1.2.0b1
 Summary: an open-source Python package enabling Self-Driving Labs (SDLs) interoperability
 Home-page: https://gitlab.com/heingroup/ivoryos
 Author: Ivory Zhang

{ivoryos-1.1.0.dist-info → ivoryos-1.2.0b1.dist-info}/RECORD

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 ivoryos/routes/execute/templates/components/tab_repeat.html,sha256=X-r7p78tVRrfwmAbhhZGBZbm78C4nTJS6O2A4dvzGEg,760
 ivoryos/routes/library/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-ivoryos/routes/library/library.py,sha256=TFKY9ByiW1h0pskmwru4BjKLqei7lYKZ9CsElZbSkNY,6381
-ivoryos/routes/library/templates/library.html,sha256=y2KIYt_f9QS8hdPtyz_x2vzx_AbxVaZNRFkGerM5T5U,3632
+ivoryos/routes/library/library.py,sha256=jook_OZRIO1nr3nBxU_X9yrDw5PSLqa0wrInI7GY6sg,5457
+ivoryos/routes/library/templates/library.html,sha256=8pyKTc0TmrSSrwSVAYrh6cuPRHutg_yAA8mqzLFyZIg,3968
 ivoryos/routes/main/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 ivoryos/routes/main/main.py,sha256=1AcSouCocHWjlpEED-ECn5OFiu0-3u0N-0st5RtKCVY,952
 ivoryos/routes/main/templates/help.html,sha256=IOktMEsOPk0SCiMBXZ4mpffClERAyX8W82fel71M3M0,9370
@@ -70,21 +68,26 @@ ivoryos/static/logo.webp,sha256=lXgfQR-4mHTH83k7VV9iB54-oC2ipe6uZvbwdOnLETc,1497
 ivoryos/static/style.css,sha256=zQVx35A5g6JMJ-K84-6fSKtzXGjp_p5ZVG6KLHPM2IE,4021
 ivoryos/static/gui_annotation/Slide1.png,sha256=Lm4gdOkUF5HIUFaB94tl6koQVkzpitKj43GXV_XYMMc,121727
 ivoryos/static/gui_annotation/Slide2.PNG,sha256=z3wQ9oVgg4JTWVLQGKK_KhtepRHUYP1e05XUWGT2A0I,118761
+ivoryos/static/js/action_handlers.js,sha256=VEDox3gQvg0YXJ6WW6IthOsFqZKmvUGJ8pmQdfzHQFw,5122
+ivoryos/static/js/db_delete.js,sha256=l67fqUaN_FVDaL7v91Hd7LyRbxnqXx9nyjF34-7aewY,561
 ivoryos/static/js/overlay.js,sha256=dPxop19es0E0ZUSY3d_4exIk7CJuQEnlW5uTt5fZfzI,483
+ivoryos/static/js/script_metadata.js,sha256=m8VYZ8OGT2oTx1kXMXq60bKQI9WCbJNkzcFDzLvRuGc,1188
 ivoryos/static/js/socket_handler.js,sha256=2Iyv_3METjhSlSavs_L9FE3PKY4xDEpfzJpd2FywY9o,5300
 ivoryos/static/js/sortable_card.js,sha256=ifmlGe3yy0U_KzMphV4ClRhK2DLOvkELYMlq1vECuac,807
-ivoryos/static/js/sortable_design.js,sha256=d55AEz8LpPX_j-hREom-I19i4l-SOG2RVSR4CnozRtY,4366
+ivoryos/static/js/sortable_design.js,sha256=QqYyk385JNm6zCgZK_Oa-cJEP1uPtZ_tVz27x4hyx5A,4790
+ivoryos/static/js/ui_state.js,sha256=5EuqwIDndjZTqj9dsAR_IA91iGMcodY_TuQo17LLL1w,3331
 ivoryos/templates/base.html,sha256=SdZswZmfLWehorMsoGkm-FjLFtB1ivLkdUJFbpDRqp4,8519
 ivoryos/utils/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
-ivoryos/utils/bo_campaign.py,sha256=7WSYVhCaDOuXIMJll_pMRUGWPQCnVt47uLHjlIomsv8,4608
+ivoryos/utils/bo_campaign.py,sha256=Fil-zT7JexL_p9XqyWByjAk42XB1R9XUKN8CdV5bi6c,9714
 ivoryos/utils/client_proxy.py,sha256=0OT2xTMkqh_2ybgCxMV_71ZVUThWwrsnAhTIBY5vDR8,2095
-ivoryos/utils/db_models.py,sha256=HQSjMrZc1o1fvjx5Mf7W_53xPbT9aZ00xtUJJNPbwio,27502
-ivoryos/utils/form.py,sha256=KlzTyG4sg1PQ-lnhKYpqaGugNWwL54PvmspqQfBoMu0,21967
-ivoryos/utils/global_config.py,sha256=OqfDrPgOzRdIUMD4V3pA9t6b-BATMjGZl8Jn7nkI56k,2138
+ivoryos/utils/db_models.py,sha256=baE4LJcSGUj10Tj6imfINXi4JQX_4oLv_kb9bd0rp-M,27920
+ivoryos/utils/form.py,sha256=eIk1N77Ynxc4Omww5ZYlmpOIJfQPWto2qfiU6nzIIeQ,21755
+ivoryos/utils/global_config.py,sha256=zNO9GYhGn7El3msWoxJIm3S4Mzb3VMh2i5ZEsVtvb2Q,2463
 ivoryos/utils/llm_agent.py,sha256=-lVCkjPlpLues9sNTmaT7bT4sdhWvV2DiojNwzB2Lcw,6422
 ivoryos/utils/py_to_json.py,sha256=fyqjaxDHPh-sahgT6IHSn34ktwf6y51_x1qvhbNlH-U,7314
-ivoryos/utils/script_runner.py,sha256=YIdOs_s-UroN1f1s_VSlWY74dWamaGBAgxDUzqvrwfU,15791
-ivoryos/utils/task_runner.py,sha256=u4nF0wOADu_HVlGYVTOXnUm1woWGgYAccr-ZCzgtb6Q,2899
+ivoryos/utils/script_runner.py,sha256=W4UL2iMt9bTBlb47pu2kc7SJyL9hlKzdtPudVZ9FvIM,16723
+ivoryos/utils/serilize.py,sha256=Ded3Vbicl4KYN8GJ_gY7HJMuInAeFZEPk5ZtuEtHPns,6933
+ivoryos/utils/task_runner.py,sha256=cDIcmDaqYh0vXoYaL_kO877pluAo2tyfsHl9OgZqJJE,3029
 ivoryos/utils/utils.py,sha256=BzgKIMMb7vyUIwYMhGDsWtwJEy5vNKtEHRJHHSiTSnM,13881
 tests/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
 tests/conftest.py,sha256=u2sQ6U-Lghyl7et1Oz6J2E5VZ47VINKcjRM_2leAE2s,3627
@@ -95,8 +98,8 @@ tests/integration/test_route_database.py,sha256=mS026W_hEuCTMpSkdRWvM-f4MYykK_6n
 tests/integration/test_route_design.py,sha256=PJAvGRiCY6B53Pu1v5vPAVHHsuaqRmRKk2eesSNshLU,1157
 tests/integration/test_route_main.py,sha256=bmuf8Y_9CRWhiLLf4up11ltEd5YCdsLx6I-o26VGDEw,1228
 tests/integration/test_sockets.py,sha256=4ZyFyExm7a-DYzVqpzEONpWeb1a0IT68wyFaQu0rY_Y,925
-ivoryos-1.1.0.dist-info/LICENSE,sha256=p2c8S8i-8YqMpZCJnadLz1-ofxnRMILzz6NCMIypRag,1084
-ivoryos-1.1.0.dist-info/METADATA,sha256=Wc_isMpJxE7DyOOrpBSoEILSAEOVgghO_LVIU7lt1Ys,8834
-ivoryos-1.1.0.dist-info/WHEEL,sha256=tZoeGjtWxWRfdplE7E3d45VPlLNQnvbKiYnx7gwAy8A,92
-ivoryos-1.1.0.dist-info/top_level.txt,sha256=mIOiZkdpSwxFJt1R5fsyOff8mNprXHq1nMGNKNULIyE,14
-ivoryos-1.1.0.dist-info/RECORD,,
+ivoryos-1.2.0b1.dist-info/LICENSE,sha256=p2c8S8i-8YqMpZCJnadLz1-ofxnRMILzz6NCMIypRag,1084
+ivoryos-1.2.0b1.dist-info/METADATA,sha256=qWMSlIivrw_uADCC-MTA6kPha-YvxXwaFxxI1Kw_JWU,8836
+ivoryos-1.2.0b1.dist-info/WHEEL,sha256=tZoeGjtWxWRfdplE7E3d45VPlLNQnvbKiYnx7gwAy8A,92
+ivoryos-1.2.0b1.dist-info/top_level.txt,sha256=mIOiZkdpSwxFJt1R5fsyOff8mNprXHq1nMGNKNULIyE,14
+ivoryos-1.2.0b1.dist-info/RECORD,,

ivoryos/routes/design/templates/components/action_list.html

@@ -1,15 +0,0 @@
-{# Action list component #}
-<div class="list-group" id="list" style="margin-top: 20px">
-    <ul class="reorder">
-    {% for button in buttons %}
-        <li id="{{ button['id'] }}" style="list-style-type: none;">
-            <span class="line-number d-none">{{ button['id'] }}.</span>
-            <a href="{{ url_for('design.design_steps.edit_action', uuid=button['uuid']) }}" type="button" class="btn btn-light" style="{{ button['style'] }}">{{ button['label'] }}</a>
-            {% if not button["instrument"] in ["if","while","repeat"] %}
-                <a href="{{ url_for('design.design_steps.duplicate_action', id=button['id']) }}" type="button" class="btn btn-light"><span class="bi bi-copy"></span></a>
-            {% endif %}
-            <a href="{{ url_for('design.design_steps.delete_action', id=button['id']) }}" type="button" class="btn btn-light"><span class="bi bi-trash"></span></a>
-        </li>
-    {% endfor %}
-    </ul>
-</div> 

ivoryos/routes/design/templates/components/operations_panel.html

@@ -1,43 +0,0 @@
-{# Operations panel component #}
-<div style="margin-bottom: 4vh;"></div>
-<div class="accordion accordion-flush">
-    <div class="accordion-item design-control">
-        <h5 class="accordion-header">
-            <button class="accordion-button" data-bs-toggle="collapse" data-bs-target="#deck" role="button" aria-expanded="false" aria-controls="collapseExample">
-                Operations
-            </button>
-        </h5>
-        <div class="accordion-collapse collapse show" id="deck">
-            <ul class="list-group">
-                {% for instrument in defined_variables %}
-                    <form role="form" method='GET' name="{{instrument}}" action="{{url_for('design.experiment_builder',instrument=instrument)}}">
-                        <div>
-                            <button class="list-group-item list-group-item-action" type="submit">{{format_name(instrument)}}</button>
-                        </div>
-                    </form>
-                {% endfor %}
-            </ul>
-        </div>
-    </div>
-
-    {% if local_variables %}
-        <div class="accordion-item  design-control">
-            <h5 class="accordion-header">
-                <button class="accordion-button" data-bs-toggle="collapse" data-bs-target="#local" role="button" aria-expanded="false" aria-controls="collapseExample">
-                    Local Operations
-                </button>
-            </h5>
-            <div class="accordion-collapse collapse show" id="local">
-                <ul class="list-group">
-                    {% for instrument in local_variables %}
-                        <form role="form" method='GET' name="{{instrument}}" action="{{url_for('design.experiment_builder',instrument=instrument)}}">
-                            <div>
-                                <button class="list-group-item list-group-item-action" type="submit"  name="device" value="{{instrument}}" >{{instrument}}</button>
-                            </div>
-                        </form>
-                    {% endfor%}
-                </ul>
-            </div>
-        </div>
-    {% endif %}
-</div> 

ivoryos/routes/design/templates/components/script_info.html

@@ -1,31 +0,0 @@
-{# Script info component #}
-<div class="collapse" id="info">
-    <table class="table script-table">
-        <tbody>
-            <tr><th scope="row">Deck Name</th><td>{{script.deck}}</td></tr>
-            <tr><th scope="row">Script Name</th><td>{{ script.name }}</td></tr>
-            <tr>
-                <th scope="row">Editing status <a role="button" data-bs-toggle="popover" data-bs-title="How to use:" data-bs-content="You can choose to disable editing, so the script is finalized and cannot be edited. Use save as to rename the script"><i class="bi bi-info-circle"></i></a></th>
-                <td>{{script.status}}</td>
-            </tr>
-            <tr>
-                <th scope="row">Output Values <a role="button" data-bs-toggle="popover" data-bs-title="How to use:" data-bs-content="This will be your output data. If the return data is not a value, it will save as None is the result file"><i class="bi bi-info-circle"></i></a></th>
-                <td>
-                    {% for i in script.config_return()[1] %}
-                        <input type="checkbox">{{i}}
-                    {% endfor %}
-                </td>
-            </tr>
-            <tr>
-                <th scope="row">Config Variables <a role="button" data-bs-toggle="popover" data-bs-title="How to use:" data-bs-content="This shows variables you want to configure later using .csv file"><i class="bi bi-info-circle"></i></a></th>
-                <td>
-                    <ul>
-                        {% for i in script.config("script")[0] %}
-                            <li>{{i}}</li>
-                        {% endfor %}
-                    </ul>
-                </td>
-            </tr>
-        </tbody>
-    </table>
-</div> 

ivoryos/routes/design/templates/components/scripts.html

@@ -1,50 +0,0 @@
-{# Scripts component for experiment builder #}
-{% if instrument and use_llm %}
-    <script>
-        const buttonIds = {{ ['generate'] | tojson }};
-    </script>
-    <script src="{{ url_for('static', filename='js/overlay.js') }}"></script>
-{% endif %}
-
-<script>
-    const updateListUrl = "{{ url_for('design.update_list') }}";
-
-    // Toggle visibility of line numbers
-    function toggleLineNumbers(save = true) {
-        const show = document.getElementById('toggleLineNumbers').checked;
-        document.querySelectorAll('.line-number').forEach(el => {
-            el.classList.toggle('d-none', !show);
-        });
-
-        if (save) {
-            localStorage.setItem('showLineNumbers', show ? 'true' : 'false');
-        }
-    }
-
-    function toggleCodeOverlay() {
-        const overlay = document.getElementById("pythonCodeOverlay");
-        const toggleBtn = document.getElementById("codeToggleBtn");
-        overlay.classList.toggle("show");
-
-        // Change arrow icon
-        const icon = toggleBtn.querySelector("i");
-        icon.classList.toggle("bi-chevron-left");
-        icon.classList.toggle("bi-chevron-right");
-    }
-
-    // Restore state on page load
-    document.addEventListener('DOMContentLoaded', () => {
-        const savedState = localStorage.getItem('showLineNumbers');
-        const checkbox = document.getElementById('toggleLineNumbers');
-
-        if (savedState === 'true') {
-            checkbox.checked = true;
-        }
-
-        toggleLineNumbers(false);  // don't overwrite localStorage on load
-
-        checkbox.addEventListener('change', () => toggleLineNumbers());
-    });
-</script>
-
-<script src="{{ url_for('static', filename='js/sortable_design.js') }}"></script>