ivoryos 1.0.9__py3-none-any.whl → 1.4.4__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- docs/source/conf.py +84 -0
- ivoryos/__init__.py +17 -207
- ivoryos/app.py +154 -0
- ivoryos/config.py +1 -0
- ivoryos/optimizer/ax_optimizer.py +191 -0
- ivoryos/optimizer/base_optimizer.py +84 -0
- ivoryos/optimizer/baybe_optimizer.py +193 -0
- ivoryos/optimizer/nimo_optimizer.py +173 -0
- ivoryos/optimizer/registry.py +11 -0
- ivoryos/routes/auth/auth.py +43 -14
- ivoryos/routes/auth/templates/change_password.html +32 -0
- ivoryos/routes/control/control.py +101 -366
- ivoryos/routes/control/control_file.py +33 -0
- ivoryos/routes/control/control_new_device.py +152 -0
- ivoryos/routes/control/templates/controllers.html +193 -0
- ivoryos/routes/control/templates/controllers_new.html +112 -0
- ivoryos/routes/control/utils.py +40 -0
- ivoryos/routes/data/data.py +197 -0
- ivoryos/routes/data/templates/components/step_card.html +78 -0
- ivoryos/routes/{database/templates/database → data/templates}/workflow_database.html +14 -8
- ivoryos/routes/data/templates/workflow_view.html +360 -0
- ivoryos/routes/design/__init__.py +4 -0
- ivoryos/routes/design/design.py +348 -657
- ivoryos/routes/design/design_file.py +68 -0
- ivoryos/routes/design/design_step.py +171 -0
- ivoryos/routes/design/templates/components/action_form.html +53 -0
- ivoryos/routes/design/templates/components/actions_panel.html +25 -0
- ivoryos/routes/design/templates/components/autofill_toggle.html +10 -0
- ivoryos/routes/design/templates/components/canvas.html +5 -0
- ivoryos/routes/design/templates/components/canvas_footer.html +9 -0
- ivoryos/routes/design/templates/components/canvas_header.html +75 -0
- ivoryos/routes/design/templates/components/canvas_main.html +39 -0
- ivoryos/routes/design/templates/components/deck_selector.html +10 -0
- ivoryos/routes/design/templates/components/edit_action_form.html +53 -0
- ivoryos/routes/design/templates/components/info_modal.html +318 -0
- ivoryos/routes/design/templates/components/instruments_panel.html +88 -0
- ivoryos/routes/design/templates/components/modals/drop_modal.html +17 -0
- ivoryos/routes/design/templates/components/modals/json_modal.html +22 -0
- ivoryos/routes/design/templates/components/modals/new_script_modal.html +17 -0
- ivoryos/routes/design/templates/components/modals/rename_modal.html +23 -0
- ivoryos/routes/design/templates/components/modals/saveas_modal.html +27 -0
- ivoryos/routes/design/templates/components/modals.html +6 -0
- ivoryos/routes/design/templates/components/python_code_overlay.html +56 -0
- ivoryos/routes/design/templates/components/sidebar.html +15 -0
- ivoryos/routes/design/templates/components/text_to_code_panel.html +20 -0
- ivoryos/routes/design/templates/experiment_builder.html +44 -0
- ivoryos/routes/execute/__init__.py +0 -0
- ivoryos/routes/execute/execute.py +377 -0
- ivoryos/routes/execute/execute_file.py +78 -0
- ivoryos/routes/execute/templates/components/error_modal.html +20 -0
- ivoryos/routes/execute/templates/components/logging_panel.html +56 -0
- ivoryos/routes/execute/templates/components/progress_panel.html +27 -0
- ivoryos/routes/execute/templates/components/run_panel.html +9 -0
- ivoryos/routes/execute/templates/components/run_tabs.html +60 -0
- ivoryos/routes/execute/templates/components/tab_bayesian.html +520 -0
- ivoryos/routes/execute/templates/components/tab_configuration.html +383 -0
- ivoryos/routes/execute/templates/components/tab_repeat.html +18 -0
- ivoryos/routes/execute/templates/experiment_run.html +30 -0
- ivoryos/routes/library/__init__.py +0 -0
- ivoryos/routes/library/library.py +157 -0
- ivoryos/routes/{database/templates/database/scripts_database.html → library/templates/library.html} +32 -23
- ivoryos/routes/main/main.py +31 -3
- ivoryos/routes/main/templates/{main/home.html → home.html} +4 -4
- ivoryos/server.py +180 -0
- ivoryos/socket_handlers.py +52 -0
- ivoryos/static/ivoryos_logo.png +0 -0
- ivoryos/static/js/action_handlers.js +384 -0
- ivoryos/static/js/db_delete.js +23 -0
- ivoryos/static/js/script_metadata.js +39 -0
- ivoryos/static/js/socket_handler.js +40 -5
- ivoryos/static/js/sortable_design.js +107 -56
- ivoryos/static/js/ui_state.js +114 -0
- ivoryos/templates/base.html +67 -8
- ivoryos/utils/bo_campaign.py +180 -3
- ivoryos/utils/client_proxy.py +267 -36
- ivoryos/utils/db_models.py +300 -65
- ivoryos/utils/decorators.py +34 -0
- ivoryos/utils/form.py +63 -29
- ivoryos/utils/global_config.py +34 -1
- ivoryos/utils/nest_script.py +314 -0
- ivoryos/utils/py_to_json.py +295 -0
- ivoryos/utils/script_runner.py +599 -165
- ivoryos/utils/serilize.py +201 -0
- ivoryos/utils/task_runner.py +71 -21
- ivoryos/utils/utils.py +50 -6
- ivoryos/version.py +1 -1
- ivoryos-1.4.4.dist-info/METADATA +263 -0
- ivoryos-1.4.4.dist-info/RECORD +119 -0
- {ivoryos-1.0.9.dist-info → ivoryos-1.4.4.dist-info}/WHEEL +1 -1
- {ivoryos-1.0.9.dist-info → ivoryos-1.4.4.dist-info}/top_level.txt +1 -0
- tests/unit/test_type_conversion.py +42 -0
- tests/unit/test_util.py +3 -0
- ivoryos/routes/control/templates/control/controllers.html +0 -78
- ivoryos/routes/control/templates/control/controllers_home.html +0 -55
- ivoryos/routes/control/templates/control/controllers_new.html +0 -89
- ivoryos/routes/database/database.py +0 -306
- ivoryos/routes/database/templates/database/step_card.html +0 -7
- ivoryos/routes/database/templates/database/workflow_view.html +0 -130
- ivoryos/routes/design/templates/design/experiment_builder.html +0 -521
- ivoryos/routes/design/templates/design/experiment_run.html +0 -558
- ivoryos-1.0.9.dist-info/METADATA +0 -218
- ivoryos-1.0.9.dist-info/RECORD +0 -61
- /ivoryos/routes/auth/templates/{auth/login.html → login.html} +0 -0
- /ivoryos/routes/auth/templates/{auth/signup.html → signup.html} +0 -0
- /ivoryos/routes/{database → data}/__init__.py +0 -0
- /ivoryos/routes/main/templates/{main/help.html → help.html} +0 -0
- {ivoryos-1.0.9.dist-info → ivoryos-1.4.4.dist-info/licenses}/LICENSE +0 -0
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{% extends 'base.html' %}
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{% block title %}IvoryOS | Experiment Results{% endblock %}
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{% block body %}
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<style>
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.vis-time-axis .vis-text.vis-minor,
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.vis-time-axis .vis-text.vis-major {
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}
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.vis-item.stop {
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background-color: #dc3545;
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color: white;
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border: none;
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font-weight: bold;
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}
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.vis-item.prep {
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background-color: #17a2b8;
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border-color: #138496;
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}
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.vis-item.script {
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background-color: #28a745;
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border-color: #1e7e34;
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}
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.vis-item.cleanup {
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color: #212529;
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}
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#visualization {
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border: 1px solid #dee2e6;
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border-radius: 0.375rem;
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background-color: #fff;
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min-height: 200px;
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}
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.section-header {
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border-bottom: 2px solid #dee2e6;
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padding-bottom: 0.5rem;
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margin-bottom: 1rem;
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color: #495057;
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}
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.loading-spinner {
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display: none;
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}
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</style>
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<div class="timeline-section" style="margin-bottom: 2rem;">
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<h3 class="section-header">
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<i class="fas fa-clock me-2"></i>Execution Timeline
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</h3>
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<div class="alert alert-info" role="alert">
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<i class="fas fa-info-circle me-2"></i>
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<strong>Tip:</strong> Click on timeline items to navigate to detailed views. Use Ctrl+scroll to zoom.
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</div>
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<div id="visualization"></div>
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</div>
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<!-- Phase Output Plot Section -->
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<div class="data-section" style="margin-bottom: 2rem;">
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<label for="output-select" class="form-label">Select Data Type:</label>
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<select id="output-select" class="form-select">
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<option value="">Loading data types...</option>
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</select>
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<div class="plot-controls">
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<div>
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<div class="col-md-6 text-md-end">
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<div class="loading-spinner">
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<div class="spinner-border spinner-border-sm text-primary me-2" role="status">
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<span class="visually-hidden">Loading...</span>
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</div>
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Loading plot data...
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</div>
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</div>
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</div>
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<div id="phase-plot" style="height:450px;" class="border rounded bg-white shadow-sm"></div>
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</div>
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<!-- Workflow Details Section -->
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<div>
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<h2 class="section-header">
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<i class="fas fa-project-diagram me-2"></i>Workflow: {{ workflow.name }}
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</h2>
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<!-- Prep Phase -->
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{% if grouped.prep %}
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<div class="mb-4">
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<h4 class="text-info mb-3">
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<i class="fas fa-tools me-2"></i>Prep
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<div class="row">
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{% for phase in grouped.prep %}
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<div class="col-lg-6 mb-3">
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{% include "components/step_card.html" %}
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</div>
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{% endfor %}
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</div>
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</div>
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{% endif %}
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<!-- Script Iterations -->
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{% for repeat_index, phase_list in grouped.script.items()|sort %}
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<div class="mb-4" id="card-iter{{ repeat_index }}">
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<h4 class="text-success mb-3">
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<i class="fas fa-redo me-2"></i>Iteration {{ repeat_index }}
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</h4>
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<div class="row">
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{% for phase in phase_list %}
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<div class="col-lg-6 mb-3">
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{% include "components/step_card.html" %}
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{% endfor %}
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</div>
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{% endfor %}
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<!-- Cleanup Phase -->
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{% if grouped.cleanup %}
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<div>
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<h4 class="text-warning mb-3">
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<i class="fas fa-broom me-2"></i>Cleanup
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{% for phase in grouped.cleanup %}
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<div class="col-lg-6 mb-3">
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{% include "components/step_card.html" %}
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</div>
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{% endfor %}
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</div>
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</div>
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{% endif %}
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</div>
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<!-- External Dependencies -->
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<script src="https://unpkg.com/vis-timeline@latest/standalone/umd/vis-timeline-graph2d.min.js"></script>
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<link href="https://unpkg.com/vis-timeline@latest/styles/vis-timeline-graph2d.min.css" rel="stylesheet"/>
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<script src="https://cdn.plot.ly/plotly-latest.min.js"></script>
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<script type="text/javascript">
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document.addEventListener('DOMContentLoaded', function() {
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// ---------------- Timeline Setup ----------------
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const container = document.getElementById('visualization');
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const groups = [
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{ id: 'all', content: 'Workflow Execution' }
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];
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const items = [
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{% if grouped.prep %}
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{
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id: 'prep',
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content: 'Prep',
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start: '{{ grouped.prep[0].start_time }}',
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end: '{{ grouped.prep[-1].end_time }}',
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className: 'prep',
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group: 'all',
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},
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{% endif %}
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{% for repeat_index, step_list in grouped.script.items()|sort %}
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{
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id: 'iter{{ repeat_index }}',
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content: 'Iteration {{ repeat_index }}',
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start: '{{ step_list[0].start_time }}',
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end: '{{ step_list[-1].end_time }}',
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className: 'script',
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group: 'all',
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},
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{% for step in step_list %}
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{% if step.method_name == "stop" %}
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{
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id: 'stop-{{ step.id }}',
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content: '🛑 Stop',
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title: 'Stop event at {{ step.start_time }}'
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},
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{% endif %}
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{% endfor %}
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{% endfor %}
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{% if grouped.cleanup %}
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{
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id: 'cleanup',
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content: 'Cleanup ',
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},
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{% endif %}
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];
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var timeline = new vis.Timeline(container, items, groups, {
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clickToUse: true,
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stack: false, // keep items from overlapping vertically
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horizontalScroll: true,
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zoomKey: 'ctrlKey'
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});
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timeline.on('select', function (props) {
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const id = props.items[0];
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if (id && id.startsWith('iter')) {
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const card = document.getElementById('card-' + id);
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if (card) {
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const yOffset = -80;
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const y = card.getBoundingClientRect().top + window.pageYOffset + yOffset;
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window.scrollTo({ top: y, behavior: 'smooth' });
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}
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}
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});
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// ---------------- Phase Data Plot ----------------
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const loadingSpinner = document.querySelector('.loading-spinner');
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loadingSpinner.style.display = 'block';
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fetch("{{ url_for('data.workflow_phase_data', workflow_id=workflow.id) }}")
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.then(res => {
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if (!res.ok) {
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throw new Error(`HTTP error! status: ${res.status}`);
|
|
236
|
+
}
|
|
237
|
+
return res.json();
|
|
238
|
+
})
|
|
239
|
+
.then(data => {
|
|
240
|
+
loadingSpinner.style.display = 'none';
|
|
241
|
+
|
|
242
|
+
const repeatKeys = Object.keys(data).sort((a, b) => a - b);
|
|
243
|
+
const dataSection = document.querySelector('.data-section'); // Get the entire section
|
|
244
|
+
|
|
245
|
+
if (!repeatKeys.length) {
|
|
246
|
+
// Hide the entire data section if no data
|
|
247
|
+
dataSection.style.display = 'none';
|
|
248
|
+
return;
|
|
249
|
+
}
|
|
250
|
+
|
|
251
|
+
const allKeys = new Set();
|
|
252
|
+
repeatKeys.forEach(k => {
|
|
253
|
+
Object.keys(data[k]).forEach(key => allKeys.add(key));
|
|
254
|
+
});
|
|
255
|
+
|
|
256
|
+
// If no keys found, also hide the section
|
|
257
|
+
if (allKeys.size === 0) {
|
|
258
|
+
dataSection.style.display = 'none';
|
|
259
|
+
return;
|
|
260
|
+
}
|
|
261
|
+
|
|
262
|
+
// Show the data section since we have data
|
|
263
|
+
dataSection.style.display = 'block';
|
|
264
|
+
|
|
265
|
+
// Clear and populate select options
|
|
266
|
+
select.innerHTML = '';
|
|
267
|
+
allKeys.forEach(k => {
|
|
268
|
+
const option = new Option(k, k);
|
|
269
|
+
select.appendChild(option);
|
|
270
|
+
});
|
|
271
|
+
|
|
272
|
+
function plotData(selectedKey) {
|
|
273
|
+
const x = [];
|
|
274
|
+
const y = [];
|
|
275
|
+
|
|
276
|
+
repeatKeys.forEach(repeat_index => {
|
|
277
|
+
const arr = data[repeat_index][selectedKey];
|
|
278
|
+
if (arr && arr.length) {
|
|
279
|
+
const batchCount = arr.length;
|
|
280
|
+
|
|
281
|
+
arr.forEach((d, batchIdx) => {
|
|
282
|
+
// Compute fractional x for batch indexing: e.g. 1.1, 1.2, 1.3
|
|
283
|
+
const xVal = parseFloat(repeat_index) + (batchIdx + 1) / (batchCount + 1);
|
|
284
|
+
|
|
285
|
+
if (typeof d === 'object' && d.x !== undefined && d.y !== undefined) {
|
|
286
|
+
x.push(xVal);
|
|
287
|
+
y.push(d.y);
|
|
288
|
+
} else if (typeof d === 'number') {
|
|
289
|
+
x.push(xVal);
|
|
290
|
+
y.push(d);
|
|
291
|
+
}
|
|
292
|
+
});
|
|
293
|
+
}
|
|
294
|
+
});
|
|
295
|
+
|
|
296
|
+
const trace = {
|
|
297
|
+
x: x,
|
|
298
|
+
y: y,
|
|
299
|
+
mode: 'markers',
|
|
300
|
+
name: selectedKey,
|
|
301
|
+
marker: { size: 8 },
|
|
302
|
+
line: { shape: 'linear', width: 1 },
|
|
303
|
+
};
|
|
304
|
+
|
|
305
|
+
const layout = {
|
|
306
|
+
xaxis: {
|
|
307
|
+
title: 'Trial (Batch Sub-index)',
|
|
308
|
+
gridcolor: '#e9ecef',
|
|
309
|
+
tickvals: repeatKeys.map(k => parseFloat(k)),
|
|
310
|
+
ticktext: repeatKeys.map(k => `Trial ${k}`),
|
|
311
|
+
},
|
|
312
|
+
yaxis: {
|
|
313
|
+
title: selectedKey,
|
|
314
|
+
gridcolor: '#e9ecef'
|
|
315
|
+
},
|
|
316
|
+
plot_bgcolor: '#ffffff',
|
|
317
|
+
paper_bgcolor: '#ffffff',
|
|
318
|
+
margin: { t: 60, r: 40, b: 60, l: 80 }
|
|
319
|
+
};
|
|
320
|
+
|
|
321
|
+
const config = {
|
|
322
|
+
responsive: true,
|
|
323
|
+
displayModeBar: true,
|
|
324
|
+
modeBarButtonsToRemove: ['lasso2d', 'select2d']
|
|
325
|
+
};
|
|
326
|
+
|
|
327
|
+
Plotly.newPlot('phase-plot', [trace], layout, config);
|
|
328
|
+
}
|
|
329
|
+
|
|
330
|
+
select.addEventListener('change', e => {
|
|
331
|
+
if (e.target.value) {
|
|
332
|
+
plotData(e.target.value);
|
|
333
|
+
}
|
|
334
|
+
});
|
|
335
|
+
|
|
336
|
+
// Plot first available data type
|
|
337
|
+
if (allKeys.size > 0) {
|
|
338
|
+
plotData([...allKeys][0]);
|
|
339
|
+
}
|
|
340
|
+
})
|
|
341
|
+
.catch(error => {
|
|
342
|
+
loadingSpinner.style.display = 'none';
|
|
343
|
+
console.error('Error loading phase data:', error);
|
|
344
|
+
|
|
345
|
+
const dataSection = document.querySelector('.data-section');
|
|
346
|
+
// Hide the section on error as well
|
|
347
|
+
dataSection.style.display = 'none';
|
|
348
|
+
|
|
349
|
+
// Optionally, you could show an error message instead:
|
|
350
|
+
// dataSection.innerHTML = `
|
|
351
|
+
// <div class="alert alert-danger m-3" role="alert">
|
|
352
|
+
// <i class="fas fa-exclamation-triangle me-2"></i>
|
|
353
|
+
// <strong>Error:</strong> Unable to load phase data. ${error.message}
|
|
354
|
+
// </div>
|
|
355
|
+
// `;
|
|
356
|
+
});
|
|
357
|
+
});
|
|
358
|
+
</script>
|
|
359
|
+
|
|
360
|
+
{% endblock %}
|