ivoryos 1.0.9__py3-none-any.whl → 1.2.0b1__py3-none-any.whl
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- ivoryos/__init__.py +26 -7
- ivoryos/routes/api/api.py +56 -0
- ivoryos/routes/auth/auth.py +5 -5
- ivoryos/routes/control/control.py +77 -372
- ivoryos/routes/control/control_file.py +36 -0
- ivoryos/routes/control/control_new_device.py +142 -0
- ivoryos/routes/control/templates/controllers.html +166 -0
- ivoryos/routes/control/templates/controllers_new.html +112 -0
- ivoryos/routes/control/utils.py +38 -0
- ivoryos/routes/data/data.py +129 -0
- ivoryos/routes/data/templates/components/step_card.html +13 -0
- ivoryos/routes/{database/templates/database → data/templates}/workflow_database.html +14 -8
- ivoryos/routes/{database/templates/database → data/templates}/workflow_view.html +3 -3
- ivoryos/routes/design/__init__.py +4 -0
- ivoryos/routes/design/design.py +298 -656
- ivoryos/routes/design/design_file.py +68 -0
- ivoryos/routes/design/design_step.py +145 -0
- ivoryos/routes/design/templates/components/action_form.html +53 -0
- ivoryos/routes/design/templates/components/actions_panel.html +25 -0
- ivoryos/routes/design/templates/components/autofill_toggle.html +10 -0
- ivoryos/routes/design/templates/components/canvas.html +5 -0
- ivoryos/routes/design/templates/components/canvas_footer.html +9 -0
- ivoryos/routes/design/templates/components/canvas_header.html +75 -0
- ivoryos/routes/design/templates/components/canvas_main.html +34 -0
- ivoryos/routes/design/templates/components/deck_selector.html +10 -0
- ivoryos/routes/design/templates/components/edit_action_form.html +38 -0
- ivoryos/routes/design/templates/components/instruments_panel.html +66 -0
- ivoryos/routes/design/templates/components/modals/drop_modal.html +17 -0
- ivoryos/routes/design/templates/components/modals/json_modal.html +22 -0
- ivoryos/routes/design/templates/components/modals/new_script_modal.html +17 -0
- ivoryos/routes/design/templates/components/modals/rename_modal.html +23 -0
- ivoryos/routes/design/templates/components/modals/saveas_modal.html +27 -0
- ivoryos/routes/design/templates/components/modals.html +6 -0
- ivoryos/routes/design/templates/components/python_code_overlay.html +39 -0
- ivoryos/routes/design/templates/components/sidebar.html +15 -0
- ivoryos/routes/design/templates/components/text_to_code_panel.html +20 -0
- ivoryos/routes/design/templates/experiment_builder.html +41 -0
- ivoryos/routes/execute/__init__.py +0 -0
- ivoryos/routes/execute/execute.py +317 -0
- ivoryos/routes/execute/execute_file.py +78 -0
- ivoryos/routes/execute/templates/components/error_modal.html +20 -0
- ivoryos/routes/execute/templates/components/logging_panel.html +31 -0
- ivoryos/routes/execute/templates/components/progress_panel.html +27 -0
- ivoryos/routes/execute/templates/components/run_panel.html +9 -0
- ivoryos/routes/execute/templates/components/run_tabs.html +17 -0
- ivoryos/routes/execute/templates/components/tab_bayesian.html +399 -0
- ivoryos/routes/execute/templates/components/tab_configuration.html +98 -0
- ivoryos/routes/execute/templates/components/tab_repeat.html +14 -0
- ivoryos/routes/execute/templates/experiment_run.html +294 -0
- ivoryos/routes/library/__init__.py +0 -0
- ivoryos/routes/library/library.py +159 -0
- ivoryos/routes/{database/templates/database/scripts_database.html → library/templates/library.html} +30 -22
- ivoryos/routes/main/main.py +1 -1
- ivoryos/routes/main/templates/{main/home.html → home.html} +4 -4
- ivoryos/socket_handlers.py +52 -0
- ivoryos/static/js/action_handlers.js +213 -0
- ivoryos/static/js/db_delete.js +23 -0
- ivoryos/static/js/script_metadata.js +39 -0
- ivoryos/static/js/sortable_design.js +89 -56
- ivoryos/static/js/ui_state.js +113 -0
- ivoryos/templates/base.html +4 -4
- ivoryos/utils/bo_campaign.py +179 -3
- ivoryos/utils/db_models.py +14 -5
- ivoryos/utils/form.py +5 -9
- ivoryos/utils/global_config.py +13 -1
- ivoryos/utils/py_to_json.py +225 -0
- ivoryos/utils/script_runner.py +49 -7
- ivoryos/utils/serilize.py +203 -0
- ivoryos/utils/task_runner.py +4 -1
- ivoryos/version.py +1 -1
- {ivoryos-1.0.9.dist-info → ivoryos-1.2.0b1.dist-info}/METADATA +5 -8
- ivoryos-1.2.0b1.dist-info/RECORD +105 -0
- ivoryos/routes/control/templates/control/controllers.html +0 -78
- ivoryos/routes/control/templates/control/controllers_home.html +0 -55
- ivoryos/routes/control/templates/control/controllers_new.html +0 -89
- ivoryos/routes/database/database.py +0 -306
- ivoryos/routes/database/templates/database/step_card.html +0 -7
- ivoryos/routes/design/templates/design/experiment_builder.html +0 -521
- ivoryos/routes/design/templates/design/experiment_run.html +0 -558
- ivoryos-1.0.9.dist-info/RECORD +0 -61
- /ivoryos/routes/auth/templates/{auth/login.html → login.html} +0 -0
- /ivoryos/routes/auth/templates/{auth/signup.html → signup.html} +0 -0
- /ivoryos/routes/{database → data}/__init__.py +0 -0
- /ivoryos/routes/main/templates/{main/help.html → help.html} +0 -0
- {ivoryos-1.0.9.dist-info → ivoryos-1.2.0b1.dist-info}/LICENSE +0 -0
- {ivoryos-1.0.9.dist-info → ivoryos-1.2.0b1.dist-info}/WHEEL +0 -0
- {ivoryos-1.0.9.dist-info → ivoryos-1.2.0b1.dist-info}/top_level.txt +0 -0
ivoryos/__init__.py
CHANGED
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@@ -3,17 +3,23 @@ import sys
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from typing import Union
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from flask import Flask, redirect, url_for, g, Blueprint
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sys.path.insert(0, os.path.abspath(os.path.join(os.path.dirname(__file__), '..')))
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from ivoryos.config import Config, get_config
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from ivoryos.routes.auth.auth import auth, login_manager
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from ivoryos.routes.control.control import control
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from ivoryos.routes.
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from ivoryos.routes.
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from ivoryos.routes.data.data import data
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from ivoryos.routes.library.library import library
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from ivoryos.routes.design.design import design
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from ivoryos.routes.execute.execute import execute
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from ivoryos.routes.api.api import api
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from ivoryos.socket_handlers import socketio
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from ivoryos.routes.main.main import main
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# from ivoryos.routes.monitor.monitor import monitor
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from ivoryos.utils import utils
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from ivoryos.utils.db_models import db, User
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from ivoryos.utils.global_config import GlobalConfig
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from ivoryos.optimizer.registry import OPTIMIZER_REGISTRY
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from ivoryos.utils.script_runner import ScriptRunner
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from ivoryos.version import __version__ as ivoryos_version
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from importlib.metadata import entry_points
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@@ -35,10 +41,13 @@ def enforce_sqlite_foreign_keys(dbapi_connection, connection_record):
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url_prefix = os.getenv('URL_PREFIX', "/ivoryos")
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app = Flask(__name__, static_url_path=f'{url_prefix}/static', static_folder='static')
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app.register_blueprint(main, url_prefix=url_prefix)
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app.register_blueprint(auth, url_prefix=url_prefix)
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app.register_blueprint(
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app.register_blueprint(
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app.register_blueprint(
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app.register_blueprint(auth, url_prefix=f'{url_prefix}/{auth.name}')
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app.register_blueprint(library, url_prefix=f'{url_prefix}/{library.name}')
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app.register_blueprint(control, url_prefix=f'{url_prefix}/instruments')
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app.register_blueprint(design, url_prefix=f'{url_prefix}')
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app.register_blueprint(execute, url_prefix=f'{url_prefix}')
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app.register_blueprint(data, url_prefix=f'{url_prefix}')
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app.register_blueprint(api, url_prefix=f'{url_prefix}/{api.name}')
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@login_manager.user_loader
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def load_user(user_id):
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def redirect_to_prefix():
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return redirect(url_for('main.index', version=ivoryos_version)) # Assuming 'index' is a route in your blueprint
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@app.template_filter('format_name')
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def format_name(name):
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name = name.split(".")[-1]
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text = ' '.join(word for word in name.split('_'))
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return text.capitalize()
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return app
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app.config["LOGGERS_PATH"] = logger_output_name or app.config["LOGGERS_PATH"] # default.log
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logger_path = os.path.join(app.config["OUTPUT_FOLDER"], app.config["LOGGERS_PATH"])
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dummy_deck_path = os.path.join(app.config["OUTPUT_FOLDER"], app.config["DUMMY_DECK"])
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global_config.optimizers = OPTIMIZER_REGISTRY
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if module:
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app.config["MODULE"] = module
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app.config["OFF_LINE"] = False
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def load_plugins(blueprints: Union[list, Blueprint], app, socketio):
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"""
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Dynamically load installed plugins and attach Flask-SocketIO.
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:param blueprints: Union[list, Blueprint] list of Blueprint objects or a single Blueprint object
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:param app: Flask application instance
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:param socketio: Flask-SocketIO instance
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:return: list of plugin names
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"""
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plugin_names = []
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if not isinstance(blueprints, list):
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import os
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from flask import Blueprint, jsonify, request, current_app
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from ivoryos.routes.control.control import find_instrument_by_name
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from ivoryos.utils.form import create_form_from_module
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from ivoryos.utils.global_config import GlobalConfig
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from ivoryos.utils.db_models import Script, WorkflowRun, SingleStep, WorkflowStep
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from ivoryos.socket_handlers import abort_pending, abort_current, pause, retry, runner
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from ivoryos.utils.task_runner import TaskRunner
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api = Blueprint('api', __name__)
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global_config = GlobalConfig()
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task_runner = TaskRunner()
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#TODO: add authentication and authorization to the API endpoints
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@api.route("/control/", strict_slashes=False, methods=['GET'])
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@api.route("/control/<string:instrument>", methods=['POST'])
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def backend_control(instrument: str=None):
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"""
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.. :quickref: Backend Control; backend control
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backend control through http requests
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.. http:get:: /api/control/
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:param instrument: instrument name
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:type instrument: str
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.. http:post:: /api/control/
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"""
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if instrument:
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inst_object = find_instrument_by_name(instrument)
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forms = create_form_from_module(sdl_module=inst_object, autofill=False, design=False)
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if request.method == 'POST':
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method_name = request.form.get("hidden_name", None)
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form = forms.get(method_name, None)
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if form:
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kwargs = {field.name: field.data for field in form if field.name not in ['csrf_token', 'hidden_name']}
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wait = request.form.get("hidden_wait", "true") == "true"
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output = task_runner.run_single_step(component=instrument, method=method_name, kwargs=kwargs, wait=wait,
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current_app=current_app._get_current_object())
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return jsonify(output), 200
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snapshot = global_config.deck_snapshot.copy()
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# Iterate through each instrument in the snapshot
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for instrument_key, instrument_data in snapshot.items():
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# Iterate through each function associated with the current instrument
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for function_key, function_data in instrument_data.items():
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# Convert the function signature to a string representation
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function_data['signature'] = str(function_data['signature'])
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return jsonify(snapshot), 200
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ivoryos/routes/auth/auth.py
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login_manager = LoginManager()
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auth = Blueprint('auth', __name__, template_folder='templates
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auth = Blueprint('auth', __name__, template_folder='templates')
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@auth.route('/
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@auth.route('/login', methods=['GET', 'POST'])
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def login():
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"""
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.. :quickref: User; login user
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return redirect(url_for('main.index'))
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else:
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flash("Incorrect username or password")
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return redirect(url_for('auth.login'))
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return redirect(url_for('auth.login'))
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return render_template('login.html')
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@auth.route('/
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@auth.route('/signup', methods=['GET', 'POST'])
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def signup():
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"""
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.. :quickref: User; signup for a new account
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@auth.route("/
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@auth.route("/logout")
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@login_required
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def logout():
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"""
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