ivoryos 1.0.9__py3-none-any.whl → 1.1.0__py3-none-any.whl

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Files changed (78) hide show
  1. ivoryos/__init__.py +18 -6
  2. ivoryos/routes/api/api.py +109 -0
  3. ivoryos/routes/auth/auth.py +5 -5
  4. ivoryos/routes/control/control.py +55 -353
  5. ivoryos/routes/control/control_file.py +36 -0
  6. ivoryos/routes/control/control_new_device.py +142 -0
  7. ivoryos/routes/control/templates/controllers.html +137 -0
  8. ivoryos/routes/control/templates/controllers_new.html +112 -0
  9. ivoryos/routes/control/utils.py +38 -0
  10. ivoryos/routes/data/data.py +108 -0
  11. ivoryos/routes/{database/templates/database → data/templates}/workflow_database.html +7 -7
  12. ivoryos/routes/{database/templates/database → data/templates}/workflow_view.html +3 -3
  13. ivoryos/routes/design/__init__.py +4 -0
  14. ivoryos/routes/design/design.py +96 -517
  15. ivoryos/routes/design/design_file.py +57 -0
  16. ivoryos/routes/design/design_step.py +43 -0
  17. ivoryos/routes/design/templates/components/action_form.html +52 -0
  18. ivoryos/routes/design/templates/components/action_list.html +15 -0
  19. ivoryos/routes/design/templates/components/autofill_toggle.html +14 -0
  20. ivoryos/routes/design/templates/components/canvas.html +14 -0
  21. ivoryos/routes/design/templates/components/canvas_footer.html +5 -0
  22. ivoryos/routes/design/templates/components/canvas_header.html +54 -0
  23. ivoryos/routes/design/templates/components/deck_selector.html +12 -0
  24. ivoryos/routes/design/templates/components/edit_action_form.html +29 -0
  25. ivoryos/routes/design/templates/components/instrument_panel.html +23 -0
  26. ivoryos/routes/design/templates/components/modals/drop_modal.html +19 -0
  27. ivoryos/routes/design/templates/components/modals/json_modal.html +22 -0
  28. ivoryos/routes/design/templates/components/modals/new_script_modal.html +18 -0
  29. ivoryos/routes/design/templates/components/modals/rename_modal.html +23 -0
  30. ivoryos/routes/design/templates/components/modals/saveas_modal.html +27 -0
  31. ivoryos/routes/design/templates/components/modals.html +6 -0
  32. ivoryos/routes/design/templates/components/operations_panel.html +43 -0
  33. ivoryos/routes/design/templates/components/python_code_overlay.html +17 -0
  34. ivoryos/routes/design/templates/components/script_info.html +31 -0
  35. ivoryos/routes/design/templates/components/scripts.html +50 -0
  36. ivoryos/routes/design/templates/components/sidebar.html +16 -0
  37. ivoryos/routes/design/templates/components/text_to_code_panel.html +20 -0
  38. ivoryos/routes/design/templates/experiment_builder.html +41 -0
  39. ivoryos/routes/execute/__init__.py +0 -0
  40. ivoryos/routes/execute/execute.py +173 -0
  41. ivoryos/routes/execute/execute_file.py +44 -0
  42. ivoryos/routes/execute/templates/components/error_modal.html +20 -0
  43. ivoryos/routes/execute/templates/components/logging_panel.html +31 -0
  44. ivoryos/routes/execute/templates/components/progress_panel.html +27 -0
  45. ivoryos/routes/execute/templates/components/run_panel.html +9 -0
  46. ivoryos/routes/execute/templates/components/run_tabs.html +17 -0
  47. ivoryos/routes/execute/templates/components/tab_bayesian.html +147 -0
  48. ivoryos/routes/execute/templates/components/tab_configuration.html +98 -0
  49. ivoryos/routes/execute/templates/components/tab_repeat.html +14 -0
  50. ivoryos/routes/execute/templates/experiment_run.html +294 -0
  51. ivoryos/routes/library/__init__.py +0 -0
  52. ivoryos/routes/{database/database.py → library/library.py} +10 -112
  53. ivoryos/routes/{database/templates/database/scripts_database.html → library/templates/library.html} +8 -8
  54. ivoryos/routes/main/main.py +1 -1
  55. ivoryos/routes/main/templates/{main/home.html → home.html} +4 -4
  56. ivoryos/socket_handlers.py +52 -0
  57. ivoryos/templates/base.html +4 -4
  58. ivoryos/utils/bo_campaign.py +43 -3
  59. ivoryos/utils/form.py +1 -0
  60. ivoryos/utils/py_to_json.py +225 -0
  61. ivoryos/utils/script_runner.py +30 -7
  62. ivoryos/version.py +1 -1
  63. {ivoryos-1.0.9.dist-info → ivoryos-1.1.0.dist-info}/METADATA +5 -8
  64. ivoryos-1.1.0.dist-info/RECORD +102 -0
  65. ivoryos/routes/control/templates/control/controllers.html +0 -78
  66. ivoryos/routes/control/templates/control/controllers_home.html +0 -55
  67. ivoryos/routes/control/templates/control/controllers_new.html +0 -89
  68. ivoryos/routes/design/templates/design/experiment_builder.html +0 -521
  69. ivoryos/routes/design/templates/design/experiment_run.html +0 -558
  70. ivoryos-1.0.9.dist-info/RECORD +0 -61
  71. /ivoryos/routes/auth/templates/{auth/login.html → login.html} +0 -0
  72. /ivoryos/routes/auth/templates/{auth/signup.html → signup.html} +0 -0
  73. /ivoryos/routes/{database → data}/__init__.py +0 -0
  74. /ivoryos/routes/{database/templates/database → data/templates/components}/step_card.html +0 -0
  75. /ivoryos/routes/main/templates/{main/help.html → help.html} +0 -0
  76. {ivoryos-1.0.9.dist-info → ivoryos-1.1.0.dist-info}/LICENSE +0 -0
  77. {ivoryos-1.0.9.dist-info → ivoryos-1.1.0.dist-info}/WHEEL +0 -0
  78. {ivoryos-1.0.9.dist-info → ivoryos-1.1.0.dist-info}/top_level.txt +0 -0
@@ -0,0 +1,36 @@
1
+ import os
2
+ from flask import Blueprint, request,current_app, send_file
3
+ from flask_login import login_required
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+
5
+ from ivoryos.utils.client_proxy import export_to_python, create_function
6
+ from ivoryos.utils.global_config import GlobalConfig
7
+
8
+ global_config = GlobalConfig()
9
+
10
+ control_file = Blueprint('file', __name__)
11
+
12
+
13
+ @control_file.route("/download/proxy", strict_slashes=False)
14
+ @login_required
15
+ def download_proxy():
16
+ """
17
+ .. :quickref: Direct Control; download proxy interface
18
+
19
+ download proxy interface
20
+
21
+ .. http:get:: /control/download
22
+ """
23
+ snapshot = global_config.deck_snapshot.copy()
24
+ class_definitions = {}
25
+ # Iterate through each instrument in the snapshot
26
+ for instrument_key, instrument_data in snapshot.items():
27
+ # Iterate through each function associated with the current instrument
28
+ for function_key, function_data in instrument_data.items():
29
+ # Convert the function signature to a string representation
30
+ function_data['signature'] = str(function_data['signature'])
31
+ class_name = instrument_key.split('.')[-1] # Extracting the class name from the path
32
+ class_definitions[class_name.capitalize()] = create_function(request.url_root, class_name, instrument_data)
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+ # Export the generated class definitions to a .py script
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+ export_to_python(class_definitions, current_app.config["OUTPUT_FOLDER"])
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+ filepath = os.path.join(current_app.config["OUTPUT_FOLDER"], "generated_proxy.py")
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+ return send_file(os.path.abspath(filepath), as_attachment=True)
@@ -0,0 +1,142 @@
1
+ import os
2
+ from flask import Blueprint, request, current_app, send_file, flash, redirect, url_for, session, render_template
3
+ from flask_login import login_required
4
+
5
+ from ivoryos.utils import utils
6
+ from ivoryos.routes.control.utils import find_instrument_by_name
7
+ from ivoryos.utils.global_config import GlobalConfig
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+
9
+ global_config = GlobalConfig()
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+
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+ control_temp = Blueprint('temp', __name__)
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+
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+ @control_temp.route("/import/module", methods=['POST'])
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+ def import_api():
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+ """
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+ .. :quickref: Advanced Features; Manually import API module(s)
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+
18
+ importing other Python modules
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+
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+ .. http:post:: /control/import/module
21
+
22
+ :form filepath: API (Python class) module filepath
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+
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+ import the module and redirect to :http:get:`/ivoryos/control/new/`
25
+
26
+ """
27
+ filepath = request.form.get('filepath')
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+ # filepath.replace('\\', '/')
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+ name = os.path.split(filepath)[-1].split('.')[0]
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+ try:
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+ spec = utils.importlib.util.spec_from_file_location(name, filepath)
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+ module = utils.importlib.util.module_from_spec(spec)
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+ spec.loader.exec_module(module)
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+ classes = utils.inspect.getmembers(module, utils.inspect.isclass)
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+ if len(classes) == 0:
36
+ flash("Invalid import: no class found in the path")
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+ return redirect(url_for("control.controllers_home"))
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+ for i in classes:
39
+ globals()[i[0]] = i[1]
40
+ global_config.api_variables.add(i[0])
41
+ # should handle path error and file type error
42
+ except Exception as e:
43
+ flash(e.__str__())
44
+ return redirect(url_for("control.temp.new_controller"))
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+
46
+
47
+
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+ @control_temp.route("/import/deck", methods=['POST'])
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+ def import_deck():
50
+ """
51
+ .. :quickref: Advanced Features; Manually import a deck
52
+
53
+ .. http:post:: /control/import_deck
54
+
55
+ :form filepath: deck module filepath
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+
57
+ import the module and redirect to the previous page
58
+
59
+ """
60
+ script = utils.get_script_file()
61
+ filepath = request.form.get('filepath')
62
+ session['dismiss'] = request.form.get('dismiss')
63
+ update = request.form.get('update')
64
+ back = request.referrer
65
+ if session['dismiss']:
66
+ return redirect(back)
67
+ name = os.path.split(filepath)[-1].split('.')[0]
68
+ try:
69
+ module = utils.import_module_by_filepath(filepath=filepath, name=name)
70
+ utils.save_to_history(filepath, current_app.config["DECK_HISTORY"])
71
+ module_sigs = utils.create_deck_snapshot(module, save=update, output_path=current_app.config["DUMMY_DECK"])
72
+ if not len(module_sigs) > 0:
73
+ flash("Invalid hardware deck, connect instruments in deck script", "error")
74
+ return redirect(url_for("control.deck_controllers"))
75
+ global_config.deck = module
76
+ global_config.deck_snapshot = module_sigs
77
+
78
+ if script.deck is None:
79
+ script.deck = module.__name__
80
+ # file path error exception
81
+ except Exception as e:
82
+ flash(e.__str__())
83
+ return redirect(back)
84
+
85
+
86
+ @control_temp.route("/new/", strict_slashes=False)
87
+ @control_temp.route("/new/<instrument>", methods=['GET', 'POST'])
88
+ @login_required
89
+ def new_controller(instrument=None):
90
+ """
91
+ .. :quickref: Direct Control; connect to a new device
92
+
93
+ interface for connecting a new <instrument>
94
+
95
+ .. http:get:: /control/new/
96
+
97
+ :param instrument: instrument name
98
+ :type instrument: str
99
+
100
+ .. http:post:: /control/new/
101
+
102
+ :form device_name: module instance name (e.g. my_instance = MyClass())
103
+ :form kwargs: dynamic module initialization kwargs fields
104
+
105
+ """
106
+ device = None
107
+ args = None
108
+ if instrument:
109
+
110
+ device = globals()[instrument]
111
+ args = utils.inspect.signature(device.__init__)
112
+
113
+ if request.method == 'POST':
114
+ device_name = request.form.get("device_name", "")
115
+ if device_name and device_name in globals():
116
+ flash("Device name is defined. Try another name, or leave it as blank to auto-configure")
117
+ # return render_template('controllers_new.html', instrument=instrument,
118
+ # api_variables=global_config.api_variables,
119
+ # device=device, args=args, defined_variables=global_config.defined_variables)
120
+ if device_name == "":
121
+ device_name = device.__name__.lower() + "_"
122
+ num = 1
123
+ while device_name + str(num) in global_config.defined_variables:
124
+ num += 1
125
+ device_name = device_name + str(num)
126
+ kwargs = request.form.to_dict()
127
+ kwargs.pop("device_name")
128
+ for i in kwargs:
129
+ if kwargs[i] in global_config.defined_variables:
130
+ kwargs[i] = global_config.defined_variables[kwargs[i]]
131
+ try:
132
+ utils.convert_config_type(kwargs, device.__init__.__annotations__, is_class=True)
133
+ except Exception as e:
134
+ flash(e)
135
+ try:
136
+ global_config.defined_variables[device_name] = device(**kwargs)
137
+ # global_config.defined_variables.add(device_name)
138
+ return redirect(url_for('control.deck_controllers'))
139
+ except Exception as e:
140
+ flash(e)
141
+ return render_template('controllers_new.html', instrument=instrument, api_variables=global_config.api_variables,
142
+ device=device, args=args, defined_variables=global_config.defined_variables)
@@ -0,0 +1,137 @@
1
+ {% extends 'base.html' %}
2
+ {% block title %}IvoryOS | Controllers {% endblock %}
3
+
4
+ {% block body %}
5
+ <div id="overlay" class="overlay">
6
+ <div>
7
+ <h3 id="overlay-text"></h3>
8
+ <div class="spinner-border" role="status"></div>
9
+ </div>
10
+ </div>
11
+ <div class="container-fluid">
12
+ <div class="row">
13
+ <!-- Sidebar: Instruments -->
14
+ <nav class="col-md-3 col-lg-2 d-md-block bg-light sidebar py-3" style="height: 100vh; overflow-y: auto; position: sticky; top: 0;">
15
+ <div class="sidebar-sticky">
16
+ <!-- Deck Instruments -->
17
+ <div class="mb-4">
18
+ <div class="list-group">
19
+ {% for inst in defined_variables %}
20
+ <a class="list-group-item list-group-item-action d-flex align-items-center {% if instrument == inst %}active bg-primary text-white border-0{% else %}bg-light{% endif %}"
21
+ href="{{ url_for('control.deck_controllers') }}?instrument={{ inst }}"
22
+ style="border-radius: 0.5rem; margin-bottom: 0.5rem; transition: background 0.2s;">
23
+ <span class="flex-grow-1">{{ format_name(inst) }}</span>
24
+ {% if instrument == inst %}
25
+ <span class="ms-auto">&gt;</span>
26
+ {% endif %}
27
+ </a>
28
+ {% endfor %}
29
+ </div>
30
+ </div>
31
+
32
+
33
+
34
+ <!-- Temp Instruments -->
35
+ {% if temp_variables %}
36
+ <div class="mb-4">
37
+ <h6 class="fw-bold text-secondary mb-2" style="letter-spacing: 1px;">Temp Instruments</h6>
38
+ <div class="list-group">
39
+ {% for inst in temp_variables %}
40
+ <a class="list-group-item list-group-item-action d-flex align-items-center {% if instrument == inst %}active bg-warning text-dark border-0{% else %}bg-light{% endif %}"
41
+ href="{{ url_for('control.deck_controllers') }}?instrument={{ inst }}"
42
+ style="border-radius: 0.5rem; margin-bottom: 0.5rem; transition: background 0.2s;">
43
+ <span class="flex-grow-1">{{ format_name(inst) }}</span>
44
+ {% if instrument == inst %}
45
+ <span class="ms-auto">&gt;</span>
46
+ {% endif %}
47
+ </a>
48
+ {% endfor %}
49
+ </div>
50
+ </div>
51
+ {% endif %}
52
+ <!-- Action Buttons -->
53
+ <div class="mb-4">
54
+ <a href="{{ url_for('control.file.download_proxy', filetype='proxy') }}" class="btn btn-outline-primary w-100 mb-2">
55
+ Download proxy
56
+ </a>
57
+ <a href="{{ url_for('control.temp.new_controller') }}" class="btn btn-outline-success w-100">
58
+ New connection
59
+ </a>
60
+ </div>
61
+ </div>
62
+ </nav>
63
+
64
+ <!-- Main: Method Cards -->
65
+ <main class="col-md-9 ms-sm-auto col-lg-10 px-md-4" style="height: 100vh; overflow-y: auto;">
66
+ {% if instrument and forms %}
67
+ {# <h2 class="text-secondary">{{ instrument }} controller</h2>#}
68
+ <div class="grid-container" id="sortable-grid" style="display: grid; grid-template-columns: repeat(auto-fit, minmax(350px, 1fr)); gap: 1rem; width: 100%;">
69
+ {% set hidden = session.get('hidden_functions', {}) %}
70
+ {% set hidden_instrument = hidden.get(instrument, []) %}
71
+ {% for function, form in forms.items() %}
72
+ {% if function not in hidden_instrument %}
73
+ <div class="card" id="{{function}}" style="margin: 0;">
74
+ <div class="bg-white rounded shadow-sm h-100">
75
+ <i class="bi bi-info-circle ms-2" data-bs-toggle="tooltip" data-bs-placement="top" title='{{ form.hidden_name.description or "Docstring is not available" }}' ></i>
76
+ <a style="float: right" aria-label="Close" href="{{ url_for('control.hide_function', instrument=instrument, function=function) }}"><i class="bi bi-eye-slash-fill"></i></a>
77
+ <div class="form-control" style="border: none">
78
+ <form role="form" method='POST' name="{{function}}" id="{{function}}" action="{{ url_for('control.deck_controllers') }}?instrument={{ instrument }}">
79
+ <div class="form-group">
80
+ {{ form.hidden_tag() }}
81
+ {% for field in form %}
82
+ {% if field.type not in ['CSRFTokenField', 'HiddenField'] %}
83
+ <div class="input-group mb-3">
84
+ <label class="input-group-text">{{ field.label.text }}</label>
85
+ {% if field.type == "SubmitField" %}
86
+ {{ field(class="btn btn-dark") }}
87
+ {% elif field.type == "BooleanField" %}
88
+ {{ field(class="form-check-input") }}
89
+ {% else %}
90
+ {{ field(class="form-control") }}
91
+ {% endif %}
92
+ </div>
93
+ {% endif %}
94
+ {% endfor %}
95
+ </div>
96
+ <div class="input-group mb-3">
97
+ <button type="submit" name="{{ function }}" id="{{ function }}" class="form-control" style="background-color: #a5cece;">{{format_name(function)}} </button>
98
+ </div>
99
+ </form>
100
+ </div>
101
+ </div>
102
+ </div>
103
+ {% endif %}
104
+ {% endfor %}
105
+ </div>
106
+ <!-- Hidden functions accordion -->
107
+ <div class="accordion accordion-flush" id="accordionActions" >
108
+ <div class="accordion-item">
109
+ <h4 class="accordion-header">
110
+ <button class="accordion-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#hidden">
111
+ Hidden functions
112
+ </button>
113
+ </h4>
114
+ </div>
115
+ <div id="hidden" class="accordion-collapse collapse" data-bs-parent="#accordionActions">
116
+ <div class="accordion-body">
117
+ {% for function in hidden_instrument %}
118
+ <div>
119
+ {{ function }} <a href="{{ url_for('control.remove_hidden', instrument=instrument, function=function) }}"><i class="bi bi-eye-fill"></i></a>
120
+ </div>
121
+ {% endfor %}
122
+ </div>
123
+ </div>
124
+ </div>
125
+ <script>
126
+ const saveOrderUrl = `{{ url_for('control.save_order', instrument=instrument) }}`;
127
+ const buttonIds = {{ session['card_order'][instrument] | tojson }};
128
+ </script>
129
+ <script src="{{ url_for('static', filename='js/sortable_card.js') }}"></script>
130
+ <script src="{{ url_for('static', filename='js/overlay.js') }}"></script>
131
+ {% else %}
132
+ <div class="alert alert-info mt-4">Select an instrument to view its methods.</div>
133
+ {% endif %}
134
+ </main>
135
+ </div>
136
+ </div>
137
+ {% endblock %}
@@ -0,0 +1,112 @@
1
+ {% extends 'base.html' %}
2
+ {% block title %}IvoryOS | New devices{% endblock %}
3
+
4
+ {% block body %}
5
+ <div class="row">
6
+ <!-- Available Python API -->
7
+ <div class="col-xl-4 col-lg-4 col-md-6 mb-4">
8
+ <div class="card shadow-sm mb-4">
9
+ <div class="card-header">
10
+ <h5 class="mb-0">Available Python API</h5>
11
+ </div>
12
+ <div class="card-body">
13
+ {% for instrument in api_variables %}
14
+ <div class="card mb-2">
15
+ <div class="card-body p-2">
16
+ <a href="{{ url_for('control.temp.new_controller', instrument=instrument) }}" class="text-dark stretched-link">{{ instrument }}</a>
17
+ </div>
18
+ </div>
19
+ {% endfor %}
20
+ <div class="card mt-3">
21
+ <div class="card-body p-2">
22
+ <a data-bs-toggle="modal" href="#importAPI" class="stretched-link">
23
+ <i class="bi bi-folder-plus"></i> Import API
24
+ </a>
25
+ </div>
26
+ </div>
27
+ </div>
28
+ </div>
29
+ </div>
30
+
31
+ <!-- Connecting Device -->
32
+ <div class="col-xl-5 col-lg-5 col-md-6 mb-4">
33
+ {% if device %}
34
+ {{ device }}
35
+ <div class="card shadow-sm mb-4">
36
+ <div class="card-header">
37
+ <h5 class="mb-0">Connecting</h5>
38
+ </div>
39
+ <div class="card-body">
40
+ <form role="form" method="POST" name="init" action="{{ url_for('control.temp.new_controller', instrument=instrument) }}">
41
+ <div class="mb-3">
42
+ <label class="form-label" for="device_name">Name this device</label>
43
+ <input class="form-control" type="text" id="device_name" name="device_name" aria-describedby="nameHelpBlock" placeholder="e.g. {{device.__name__}}_1">
44
+ <div id="nameHelpBlock" class="form-text">
45
+ Name your instrument, avoid names that are defined on the right
46
+ </div>
47
+ </div>
48
+ {% for arg in device.__init__.__annotations__ %}
49
+ {% if not arg == "return" %}
50
+ <div class="mb-3">
51
+ <label class="form-label" for="{{arg}}">{{arg}}</label>
52
+ <input class="form-control" type="text" id="{{arg}}" name="{{arg}}"
53
+ placeholder="{{device.__init__.__annotations__[arg].__name__}}"
54
+ value="{{args.parameters[arg].default if not args.parameters[arg].default.__name__ == '_empty' else ''}}">
55
+ {% if device.__init__.__annotations__[arg].__module__ is not in ["builtins", "typing"] %}
56
+ <a role="button" href="{{ url_for('control.temp.new_controller', instrument=device.__init__.__annotations__[arg].__name__) }}" class="btn btn-secondary btn-sm mt-2">Initialize {{device.__init__.__annotations__[arg].__name__}} first</a>
57
+ {% endif %}
58
+ </div>
59
+ {% endif %}
60
+ {% endfor %}
61
+ <button type="submit" class="btn btn-dark">Connect</button>
62
+ </form>
63
+ </div>
64
+ </div>
65
+ {% endif %}
66
+ </div>
67
+
68
+ <!-- Defined Instruments -->
69
+ <div class="col-xl-3 col-lg-3 col-md-6 mb-4">
70
+ <div class="card shadow-sm mb-4">
71
+ <div class="card-header">
72
+ <h5 class="mb-0">Defined Instruments</h5>
73
+ </div>
74
+ <div class="card-body">
75
+ {% if defined_variables %}
76
+ <ul class="list-group">
77
+ {% for instrument in defined_variables %}
78
+ <li class="list-group-item">{{ instrument }}</li>
79
+ {% endfor %}
80
+ </ul>
81
+ {% else %}
82
+ <span class="text-muted">No instruments defined.</span>
83
+ {% endif %}
84
+ </div>
85
+ </div>
86
+ </div>
87
+ </div>
88
+
89
+ <!-- Import API Modal -->
90
+ <div class="modal fade" id="importAPI" tabindex="-1" aria-labelledby="importModal" aria-hidden="true">
91
+ <div class="modal-dialog">
92
+ <div class="modal-content">
93
+ <div class="modal-header">
94
+ <h1 class="modal-title fs-5" id="importModal">Import API by file path</h1>
95
+ <button type="button" class="btn-close" data-bs-dismiss="modal" aria-label="Close"></button>
96
+ </div>
97
+ <form method="POST" action="{{ url_for('control.temp.import_api') }}" enctype="multipart/form-data">
98
+ <div class="modal-body">
99
+ <div class="mb-3">
100
+ <label class="form-label" for="filepath">File Path:</label>
101
+ <input type="text" class="form-control" name="filepath" id="filepath">
102
+ </div>
103
+ </div>
104
+ <div class="modal-footer">
105
+ <button type="button" class="btn btn-secondary" data-bs-dismiss="modal">Close</button>
106
+ <button type="submit" class="btn btn-primary">Save</button>
107
+ </div>
108
+ </form>
109
+ </div>
110
+ </div>
111
+ </div>
112
+ {% endblock %}
@@ -0,0 +1,38 @@
1
+ from flask import session
2
+
3
+ from ivoryos.utils.global_config import GlobalConfig
4
+
5
+
6
+ global_config = GlobalConfig()
7
+
8
+
9
+ def find_instrument_by_name(name: str):
10
+ """
11
+ find instrument class object by instance name
12
+ """
13
+ if name.startswith("deck"):
14
+ name = name.replace("deck.", "")
15
+ return getattr(global_config.deck, name)
16
+ elif name in global_config.defined_variables:
17
+ return global_config.defined_variables[name]
18
+ elif name in globals():
19
+ return globals()[name]
20
+
21
+
22
+ def get_session_by_instrument(session_name, instrument):
23
+ """get data from session by instrument"""
24
+ session_object = session.get(session_name, {})
25
+ functions = session_object.get(instrument, [])
26
+ return functions
27
+
28
+
29
+ def post_session_by_instrument(session_name, instrument, data):
30
+ """
31
+ save new data to session by instrument
32
+ :param session_name: "card_order" or "hidden_functions"
33
+ :param instrument: function name of class object
34
+ :param data: order list or hidden function list
35
+ """
36
+ session_object = session.get(session_name, {})
37
+ session_object[instrument] = data
38
+ session[session_name] = session_object
@@ -0,0 +1,108 @@
1
+ from flask import Blueprint, redirect, url_for, flash, request, render_template, session, current_app, jsonify
2
+ from flask_login import login_required
3
+
4
+ from ivoryos.utils.db_models import Script, db, WorkflowRun, WorkflowStep
5
+ from ivoryos.utils.utils import get_script_file, post_script_file
6
+
7
+ data = Blueprint('data', __name__, template_folder='templates')
8
+
9
+
10
+
11
+ @data.route('/all')
12
+ def list_workflows():
13
+ """
14
+ .. :quickref: Database; list all workflow logs
15
+
16
+ list all workflow logs
17
+
18
+ .. http:get:: /database/workflows/
19
+
20
+ """
21
+ query = WorkflowRun.query.order_by(WorkflowRun.id.desc())
22
+ search_term = request.args.get("keyword", None)
23
+ if search_term:
24
+ query = query.filter(WorkflowRun.name.like(f'%{search_term}%'))
25
+ page = request.args.get('page', default=1, type=int)
26
+ per_page = 10
27
+
28
+ workflows = query.paginate(page=page, per_page=per_page, error_out=False)
29
+ if request.accept_mimetypes.best_match(['application/json', 'text/html']) == 'application/json':
30
+ workflows = query.all()
31
+ workflow_data = {w.id:{"workflow_name":w.name, "start_time":w.start_time} for w in workflows}
32
+ return jsonify({
33
+ "workflow_data": workflow_data,
34
+ })
35
+ else:
36
+ return render_template('workflow_database.html', workflows=workflows)
37
+
38
+
39
+ @data.route("/get/<int:workflow_id>")
40
+ def get_workflow_steps(workflow_id:int):
41
+ """
42
+ .. :quickref: Database; list all workflow logs
43
+
44
+ list all workflow logs
45
+
46
+ .. http:get:: /database/workflows/<int:workflow_id>
47
+
48
+ """
49
+ workflow = db.session.get(WorkflowRun, workflow_id)
50
+ steps = WorkflowStep.query.filter_by(workflow_id=workflow_id).order_by(WorkflowStep.start_time).all()
51
+
52
+ # Use full objects for template rendering
53
+ grouped = {
54
+ "prep": [],
55
+ "script": {},
56
+ "cleanup": [],
57
+ }
58
+
59
+ # Use dicts for JSON response
60
+ grouped_json = {
61
+ "prep": [],
62
+ "script": {},
63
+ "cleanup": [],
64
+ }
65
+
66
+ for step in steps:
67
+ step_dict = step.as_dict()
68
+
69
+ if step.phase == "prep":
70
+ grouped["prep"].append(step)
71
+ grouped_json["prep"].append(step_dict)
72
+
73
+ elif step.phase == "script":
74
+ grouped["script"].setdefault(step.repeat_index, []).append(step)
75
+ grouped_json["script"].setdefault(step.repeat_index, []).append(step_dict)
76
+
77
+ elif step.phase == "cleanup" or step.method_name == "stop":
78
+ grouped["cleanup"].append(step)
79
+ grouped_json["cleanup"].append(step_dict)
80
+
81
+ if request.accept_mimetypes.best_match(['application/json', 'text/html']) == 'application/json':
82
+ return jsonify({
83
+ "workflow_info": workflow.as_dict(),
84
+ "steps": grouped_json,
85
+ })
86
+ else:
87
+ return render_template("workflow_view.html", workflow=workflow, grouped=grouped)
88
+
89
+
90
+ @data.route("/delete/<int:workflow_id>")
91
+ @login_required
92
+ def delete_workflow_data(workflow_id: int):
93
+ """
94
+ .. :quickref: Database; delete experiment data from database
95
+
96
+ delete workflow data from database
97
+
98
+ .. http:get:: /database/workflows/delete/<int:workflow_id>
99
+
100
+ :param workflow_id: workflow id
101
+ :type workflow_id: int
102
+ :status 302: redirect to :http:get:`/ivoryos/database/workflows/`
103
+
104
+ """
105
+ run = WorkflowRun.query.get(workflow_id)
106
+ db.session.delete(run)
107
+ db.session.commit()
108
+ return redirect(url_for('database.list_workflows'))
@@ -3,7 +3,7 @@
3
3
  {% block title %}IvoryOS | Design Database{% endblock %}
4
4
  {% block body %}
5
5
  <div class="div">
6
- <form id="search" style="display: inline-block;float: right;" action="{{url_for('database.list_workflows',deck_name=deck_name)}}" method="GET">
6
+ <form id="search" style="display: inline-block;float: right;" action="{{url_for('data.list_workflows',deck_name=deck_name)}}" method="GET">
7
7
  <div class="input-group">
8
8
  <div class="form-outline">
9
9
  <input type="search" name="keyword" id="keyword" class="form-control" placeholder="Search workflows...">
@@ -28,19 +28,19 @@
28
28
  <tbody>
29
29
  {% for workflow in workflows %}
30
30
  <tr>
31
- <td><a href="{{ url_for('database.get_workflow_steps', workflow_id=workflow.id) }}">{{ workflow.name }}</a></td>
31
+ <td><a href="{{ url_for('data.get_workflow_steps', workflow_id=workflow.id) }}">{{ workflow.name }}</a></td>
32
32
  <td>{{ workflow.id }}</td>
33
33
  <td>{{ workflow.start_time.strftime("%Y-%m-%d %H:%M:%S") if workflow.start_time else '' }}</td>
34
34
  <td>{{ workflow.end_time.strftime("%Y-%m-%d %H:%M:%S") if workflow.end_time else '' }}</td>
35
35
 
36
36
  <td>
37
37
  {% if workflow.data_path %}
38
- <a href="{{ url_for('design.download_results', filename=workflow.data_path) }}">{{ workflow.data_path }}</a>
38
+ <a href="{{ url_for('design.design_files.download_results', filename=workflow.data_path) }}">{{ workflow.data_path }}</a>
39
39
  {% endif %}
40
40
  </td>
41
41
  <td>
42
42
  {% if session['user'] == 'admin' or session['user'] == workflow.author %}
43
- <a href="{{ url_for('database.delete_workflow_data', workflow_id=workflow.id) }}">delete</a>
43
+ <a href="{{ url_for('data.delete_workflow_data', workflow_id=workflow.id) }}">delete</a>
44
44
  {% else %}
45
45
  <a class="disabled-link">delete</a>
46
46
  {% endif %}
@@ -53,13 +53,13 @@
53
53
  {# paging#}
54
54
  <div class="pagination justify-content-center">
55
55
  <div class="page-item {{ 'disabled' if not workflows.has_prev else '' }}">
56
- <a class="page-link" href="{{ url_for('database.list_workflows', page=workflows.prev_num) }}">Previous</a>
56
+ <a class="page-link" href="{{ url_for('data.list_workflows', page=workflows.prev_num) }}">Previous</a>
57
57
  </div>
58
58
 
59
59
  {% for num in workflows.iter_pages() %}
60
60
  {% if num %}
61
61
  <div class="page-item {{ 'active' if num == workflows.page else '' }}">
62
- <a class="page-link" href="{{ url_for('database.list_workflows', page=num) }}">{{ num }}</a>
62
+ <a class="page-link" href="{{ url_for('data.list_workflows', page=num) }}">{{ num }}</a>
63
63
  </div>
64
64
  {% else %}
65
65
  <div class="page-item disabled">
@@ -69,7 +69,7 @@
69
69
  {% endfor %}
70
70
 
71
71
  <div class="page-item {{ 'disabled' if not workflows.has_next else '' }}">
72
- <a class="page-link" href="{{ url_for('database.list_workflows', page=workflows.next_num) }}">Next</a>
72
+ <a class="page-link" href="{{ url_for('data.list_workflows', page=workflows.next_num) }}">Next</a>
73
73
  </div>
74
74
  </div>
75
75
 
@@ -110,21 +110,21 @@
110
110
  {% if grouped.prep %}
111
111
  <h4 class="mt-4">Prep Phase</h4>
112
112
  {% for step in grouped.prep %}
113
- {% include "step_card.html" %}
113
+ {% include "components/step_card.html" %}
114
114
  {% endfor %}
115
115
  {% endif %}
116
116
 
117
117
  {% for repeat_index, step_list in grouped.script.items()|sort %}
118
118
  <h4 class="mt-4" id="card-iter{{ repeat_index }}">Iteration {{ repeat_index }}</h4>
119
119
  {% for step in step_list %}
120
- {% include "step_card.html" %}
120
+ {% include "components/step_card.html" %}
121
121
  {% endfor %}
122
122
  {% endfor %}
123
123
 
124
124
  {% if grouped.cleanup %}
125
125
  <h4 class="mt-4">Cleanup Phase</h4>
126
126
  {% for step in grouped.cleanup %}
127
- {% include "step_card.html" %}
127
+ {% include "components/step_card.html" %}
128
128
  {% endfor %}
129
129
  {% endif %}
130
130
  {% endblock %}
@@ -0,0 +1,4 @@
1
+ from .design import design
2
+ # from ivoryos.routes.execute.socket_handlers import socketio
3
+
4
+ __all__ = ['design', ]