ivoryos 0.1.9__py3-none-any.whl → 0.1.12__py3-none-any.whl

ivoryos/utils/global_config.py

@@ -1,68 +1,68 @@
-# from ivoryos.utils.script_runner import ScriptRunner
-
-
-class GlobalConfig:
-    _instance = None
-
-    def __new__(cls, *args, **kwargs):
-        if cls._instance is None:
-            cls._instance = super(GlobalConfig, cls).__new__(cls, *args, **kwargs)
-            cls._instance._deck = None
-            cls._instance._agent = None
-            cls._instance._defined_variables = {}
-            cls._instance._api_variables = set()
-            cls._instance._deck_snapshot = {}
-            cls._instance._runner = None
-        return cls._instance
-
-    @property
-    def deck(self):
-        return self._deck
-
-    @deck.setter
-    def deck(self, value):
-        if self._deck is None:
-            self._deck = value
-
-
-    @property
-    def deck_snapshot(self):
-        return self._deck_snapshot
-
-    @deck_snapshot.setter
-    def deck_snapshot(self, value):
-        self._deck_snapshot = value
-
-
-    @property
-    def agent(self):
-        return self._agent
-
-    @agent.setter
-    def agent(self, value):
-        if self._agent is None:
-            self._agent = value
-
-    @property
-    def defined_variables(self):
-        return self._defined_variables
-
-    @defined_variables.setter
-    def defined_variables(self, value):
-        self._defined_variables = value
-
-    @property
-    def api_variables(self):
-        return self._api_variables
-
-    @api_variables.setter
-    def api_variables(self, value):
-        self._api_variables = value
-
-    @property
-    def runner(self):
-        return self._runner
-
-    @runner.setter
-    def runner(self, value):
+# from ivoryos.utils.script_runner import ScriptRunner
+
+
+class GlobalConfig:
+    _instance = None
+
+    def __new__(cls, *args, **kwargs):
+        if cls._instance is None:
+            cls._instance = super(GlobalConfig, cls).__new__(cls, *args, **kwargs)
+            cls._instance._deck = None
+            cls._instance._agent = None
+            cls._instance._defined_variables = {}
+            cls._instance._api_variables = set()
+            cls._instance._deck_snapshot = {}
+            cls._instance._runner = None
+        return cls._instance
+
+    @property
+    def deck(self):
+        return self._deck
+
+    @deck.setter
+    def deck(self, value):
+        if self._deck is None:
+            self._deck = value
+
+
+    @property
+    def deck_snapshot(self):
+        return self._deck_snapshot
+
+    @deck_snapshot.setter
+    def deck_snapshot(self, value):
+        self._deck_snapshot = value
+
+
+    @property
+    def agent(self):
+        return self._agent
+
+    @agent.setter
+    def agent(self, value):
+        if self._agent is None:
+            self._agent = value
+
+    @property
+    def defined_variables(self):
+        return self._defined_variables
+
+    @defined_variables.setter
+    def defined_variables(self, value):
+        self._defined_variables = value
+
+    @property
+    def api_variables(self):
+        return self._api_variables
+
+    @api_variables.setter
+    def api_variables(self, value):
+        self._api_variables = value
+
+    @property
+    def runner(self):
+        return self._runner
+
+    @runner.setter
+    def runner(self, value):
         self._runner = value

ivoryos/utils/llm_agent.py

@@ -1,183 +1,183 @@
-import inspect
-import json
-import os
-import re
-
-from openai import OpenAI
-
-
-# from dotenv import load_dotenv
-# load_dotenv()
-
-# host = "137.82.65.246"
-# model = "llama3"
-
-# structured output,
-# class Action(BaseModel):
-#     action: str
-#     args: dict
-#     arg_types: dict
-#
-#
-# class ActionPlan(BaseModel):
-#     actions: list[Action]
-#     # final_answer: str
-
-
-class LlmAgent:
-    def __init__(self, model="llama3", output_path=os.curdir, host=None):
-        self.host = host
-        self.base_url = f"http://{self.host}:11434/v1/" if host is not None else ""
-        self.model = model
-        self.output_path = os.path.join(output_path, "llm_output") if output_path is not None else None
-        self.client = OpenAI(api_key=os.getenv("OPENAI_API_KEY")) if host is None else OpenAI(api_key="ollama",
-                                                                                              base_url=self.base_url)
-        if self.output_path is not None:
-            os.makedirs(self.output_path, exist_ok=True)
-
-    @staticmethod
-    def extract_annotations_docstrings(module_sigs):
-        class_str = ""
-
-        for name, value in module_sigs.items():
-            signature = value.get("signature")
-            docstring = value.get("docstring")
-            class_str += f'\tdef {name}{signature}:\n'
-            class_str += f'\t\t"""\n\t\t{docstring}\n\t\t"""' + '\n' if docstring else ''
-        class_str = class_str.replace('self, ', '')
-        class_str = class_str.replace('self', '')
-        name_list = list(module_sigs.keys())
-        # print(class_str)
-        # with open(os.path.join(self.output_path, "docstring_manual.txt"), "w") as f:
-        #     f.write(class_str)
-        return class_str, name_list
-
-    @staticmethod
-    def parse_code_from_msg(msg):
-        msg = msg.strip()
-        # print(msg)
-        # code_blocks = re.findall(r'```(?:json\s)?(.*?)```', msg, re.DOTALL)
-        code_blocks = re.findall(r'\[\s*\{.*?\}\s*\]', msg, re.DOTALL)
-
-        json_blocks = []
-        for block in code_blocks:
-            if not block.startswith('['):
-                start_index = block.find('[')
-                block = block[start_index:]
-            block = re.sub(r'//.*', '', block)
-            block = block.replace('True', 'true').replace('False', 'false')
-            try:
-                # Try to parse the block as JSON
-                json_data = json.loads(block.strip())
-                if isinstance(json_data, list):
-                    json_blocks = json_data
-            except json.JSONDecodeError:
-                continue
-        return json_blocks
-
-    def _generate(self, robot_sigs, prompt):
-        # deck_info, name_list = self.extract_annotations_docstrings(type(robot))
-        deck_info, name_list = self.extract_annotations_docstrings(robot_sigs)
-        full_prompt = '''I have some python functions, for example when calling them I want to write them using JSON, 
-it is necessary to include all args
-for example
-def dose_solid(amount_in_mg:float, bring_in:bool=True): def analyze():
-dose_solid(3)
-analyze()
-I would want to write to
-[
-{
-    "action": "dose_solid",
-    "arg_types": {
-        "amount_in_mg": "float",
-        "bring_in": "bool"
-    },
-    "args": {
-        "amount_in_mg": 3,
-        "bring_in": true
-    }
-},
-{
-    "action": "analyze",
-    "arg_types": {},
-    "args": {}
-}
-]
-''' + f'''
-Now these are my callable functions,
-{deck_info}
-and I want you to find the most appropriate function if I want to do these tasks
-"""{prompt}"""
-,and write a list of dictionary in json accordingly. Please only use these action names {name_list}, 
-can you also help find the default value you can't find the info from my request.
-'''
-        if self.output_path is not None:
-            with open(os.path.join(self.output_path, "prompt.txt"), "w") as f:
-                f.write(full_prompt)
-        messages = [{"role": "user",
-                     "content": full_prompt}, ]
-        # if self.host == "openai":
-        output = self.client.chat.completions.create(
-            messages=messages,
-            model=self.model,
-            # response_format={"type": "json_object"},
-        )
-        msg = output.choices[0].message.content
-        # msg = output.choices[0].message.parsed
-
-        code = self.parse_code_from_msg(msg)
-        code = [action for action in code if action.get('action', '') in name_list]
-        # print('\033[91m', code, '\033[0m')
-        return code
-
-    def generate_code(self, robot_signature, prompt, attempt_allowance: int = 3):
-        attempt = 0
-
-        while attempt < attempt_allowance:
-            _code = self._generate(robot_signature, prompt)
-            attempt += 1
-            if _code:
-                break
-
-        return self.fill_blanks(_code, robot_signature)
-        # return code
-
-    @staticmethod
-    def fill_blanks(actions, robot_signature):
-        for action in actions:
-            action_name = action['action']
-            action_signature = robot_signature.get(action_name).get('signature', {})
-            args = action.get("args", {})
-            arg_types = action.get("arg_types", {})
-            for param in action_signature.parameters.values():
-                if param.name == 'self':
-                    continue
-                if param.name not in args:
-                    args[param.name] = param.default if param.default is not param.empty else ''
-                    arg_types[param.name] = param.annotation.__name__
-            action['args'] = args
-            action['arg_types'] = arg_types
-        return actions
-
-
-if __name__ == "__main__":
-    from pprint import pprint
-    from example.sdl_example.abstract_sdl import deck
-
-    from utils import parse_functions
-
-    deck_sig = parse_functions(deck, doc_string=True)
-    # llm_agent = LlmAgent(host="openai", model="gpt-3.5-turbo")
-    llm_agent = LlmAgent(host="localhost", model="llama3.1")
-    # robot = IrohDeck()
-    # extract_annotations_docstrings(DummySDLDeck)
-    prompt = '''I want to start with dosing 10 mg of current sample, and add 1 mL of toluene 
-    and equilibrate for 10 minute at 40 degrees, then sample 20 ul of sample to analyze with hplc, and save result'''
-    code = llm_agent.generate_code(deck_sig, prompt)
-    pprint(code)
-
-"""
-I want to dose 10mg, 6mg, 4mg, 3mg, 2mg, 1mg to 6 vials
-I want to add 10 mg to vial a3, and 10 ml of liquid, then shake them for 3 minutes
-
-"""
+import inspect
+import json
+import os
+import re
+
+from openai import OpenAI
+
+
+# from dotenv import load_dotenv
+# load_dotenv()
+
+# host = "137.82.65.246"
+# model = "llama3"
+
+# structured output,
+# class Action(BaseModel):
+#     action: str
+#     args: dict
+#     arg_types: dict
+#
+#
+# class ActionPlan(BaseModel):
+#     actions: list[Action]
+#     # final_answer: str
+
+
+class LlmAgent:
+    def __init__(self, model="llama3", output_path=os.curdir, host=None):
+        self.host = host
+        self.base_url = f"http://{self.host}:11434/v1/" if host is not None else ""
+        self.model = model
+        self.output_path = os.path.join(output_path, "llm_output") if output_path is not None else None
+        self.client = OpenAI(api_key=os.getenv("OPENAI_API_KEY")) if host is None else OpenAI(api_key="ollama",
+                                                                                              base_url=self.base_url)
+        if self.output_path is not None:
+            os.makedirs(self.output_path, exist_ok=True)
+
+    @staticmethod
+    def extract_annotations_docstrings(module_sigs):
+        class_str = ""
+
+        for name, value in module_sigs.items():
+            signature = value.get("signature")
+            docstring = value.get("docstring")
+            class_str += f'\tdef {name}{signature}:\n'
+            class_str += f'\t\t"""\n\t\t{docstring}\n\t\t"""' + '\n' if docstring else ''
+        class_str = class_str.replace('self, ', '')
+        class_str = class_str.replace('self', '')
+        name_list = list(module_sigs.keys())
+        # print(class_str)
+        # with open(os.path.join(self.output_path, "docstring_manual.txt"), "w") as f:
+        #     f.write(class_str)
+        return class_str, name_list
+
+    @staticmethod
+    def parse_code_from_msg(msg):
+        msg = msg.strip()
+        # print(msg)
+        # code_blocks = re.findall(r'```(?:json\s)?(.*?)```', msg, re.DOTALL)
+        code_blocks = re.findall(r'\[\s*\{.*?\}\s*\]', msg, re.DOTALL)
+
+        json_blocks = []
+        for block in code_blocks:
+            if not block.startswith('['):
+                start_index = block.find('[')
+                block = block[start_index:]
+            block = re.sub(r'//.*', '', block)
+            block = block.replace('True', 'true').replace('False', 'false')
+            try:
+                # Try to parse the block as JSON
+                json_data = json.loads(block.strip())
+                if isinstance(json_data, list):
+                    json_blocks = json_data
+            except json.JSONDecodeError:
+                continue
+        return json_blocks
+
+    def _generate(self, robot_sigs, prompt):
+        # deck_info, name_list = self.extract_annotations_docstrings(type(robot))
+        deck_info, name_list = self.extract_annotations_docstrings(robot_sigs)
+        full_prompt = '''I have some python functions, for example when calling them I want to write them using JSON, 
+it is necessary to include all args
+for example
+def dose_solid(amount_in_mg:float, bring_in:bool=True): def analyze():
+dose_solid(3)
+analyze()
+I would want to write to
+[
+{
+    "action": "dose_solid",
+    "arg_types": {
+        "amount_in_mg": "float",
+        "bring_in": "bool"
+    },
+    "args": {
+        "amount_in_mg": 3,
+        "bring_in": true
+    }
+},
+{
+    "action": "analyze",
+    "arg_types": {},
+    "args": {}
+}
+]
+''' + f'''
+Now these are my callable functions,
+{deck_info}
+and I want you to find the most appropriate function if I want to do these tasks
+"""{prompt}"""
+,and write a list of dictionary in json accordingly. Please only use these action names {name_list}, 
+can you also help find the default value you can't find the info from my request.
+'''
+        if self.output_path is not None:
+            with open(os.path.join(self.output_path, "prompt.txt"), "w") as f:
+                f.write(full_prompt)
+        messages = [{"role": "user",
+                     "content": full_prompt}, ]
+        # if self.host == "openai":
+        output = self.client.chat.completions.create(
+            messages=messages,
+            model=self.model,
+            # response_format={"type": "json_object"},
+        )
+        msg = output.choices[0].message.content
+        # msg = output.choices[0].message.parsed
+
+        code = self.parse_code_from_msg(msg)
+        code = [action for action in code if action.get('action', '') in name_list]
+        # print('\033[91m', code, '\033[0m')
+        return code
+
+    def generate_code(self, robot_signature, prompt, attempt_allowance: int = 3):
+        attempt = 0
+
+        while attempt < attempt_allowance:
+            _code = self._generate(robot_signature, prompt)
+            attempt += 1
+            if _code:
+                break
+
+        return self.fill_blanks(_code, robot_signature)
+        # return code
+
+    @staticmethod
+    def fill_blanks(actions, robot_signature):
+        for action in actions:
+            action_name = action['action']
+            action_signature = robot_signature.get(action_name).get('signature', {})
+            args = action.get("args", {})
+            arg_types = action.get("arg_types", {})
+            for param in action_signature.parameters.values():
+                if param.name == 'self':
+                    continue
+                if param.name not in args:
+                    args[param.name] = param.default if param.default is not param.empty else ''
+                    arg_types[param.name] = param.annotation.__name__
+            action['args'] = args
+            action['arg_types'] = arg_types
+        return actions
+
+
+if __name__ == "__main__":
+    from pprint import pprint
+    from example.sdl_example.abstract_sdl import deck
+
+    from utils import parse_functions
+
+    deck_sig = parse_functions(deck, doc_string=True)
+    # llm_agent = LlmAgent(host="openai", model="gpt-3.5-turbo")
+    llm_agent = LlmAgent(host="localhost", model="llama3.1")
+    # robot = IrohDeck()
+    # extract_annotations_docstrings(DummySDLDeck)
+    prompt = '''I want to start with dosing 10 mg of current sample, and add 1 mL of toluene 
+    and equilibrate for 10 minute at 40 degrees, then sample 20 ul of sample to analyze with hplc, and save result'''
+    code = llm_agent.generate_code(deck_sig, prompt)
+    pprint(code)
+
+"""
+I want to dose 10mg, 6mg, 4mg, 3mg, 2mg, 1mg to 6 vials
+I want to add 10 mg to vial a3, and 10 ml of liquid, then shake them for 3 minutes
+
+"""