ion-CSP 2.2.2__py3-none-any.whl → 2.2.3__py3-none-any.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- ion_CSP/__init__.py +2 -2
- ion_CSP/mlp_opt.py +2 -6
- {ion_csp-2.2.2.dist-info → ion_csp-2.2.3.dist-info}/METADATA +1 -1
- {ion_csp-2.2.2.dist-info → ion_csp-2.2.3.dist-info}/RECORD +8 -8
- {ion_csp-2.2.2.dist-info → ion_csp-2.2.3.dist-info}/WHEEL +0 -0
- {ion_csp-2.2.2.dist-info → ion_csp-2.2.3.dist-info}/entry_points.txt +0 -0
- {ion_csp-2.2.2.dist-info → ion_csp-2.2.3.dist-info}/licenses/LICENSE +0 -0
- {ion_csp-2.2.2.dist-info → ion_csp-2.2.3.dist-info}/top_level.txt +0 -0
ion_CSP/__init__.py
CHANGED
ion_CSP/mlp_opt.py
CHANGED
@@ -10,17 +10,14 @@ import numpy as np
|
|
10
10
|
import multiprocessing
|
11
11
|
from ase.io.vasp import read_vasp
|
12
12
|
from ase.optimize import LBFGS
|
13
|
-
|
14
|
-
from ase.filters import ExpCellFilter
|
13
|
+
from ase.constraints import UnitCellFilter
|
15
14
|
from deepmd.calculator import DP
|
16
|
-
# from mattersim.forcefield import MatterSimCalculator
|
17
15
|
|
18
16
|
# 根据脚本位置确定model.pt文件的位置, 减少错误发生
|
19
17
|
base_dir = os.path.dirname(__file__)
|
20
18
|
relative_path = './model.pt'
|
21
19
|
file_path = os.path.join(base_dir, relative_path)
|
22
20
|
calc = DP(file_path)
|
23
|
-
# calc = MatterSimCalculator(device="cuda")
|
24
21
|
|
25
22
|
|
26
23
|
def get_element_num(elements):
|
@@ -162,8 +159,7 @@ def run_opt(index: int):
|
|
162
159
|
aim_stress = 1.0 * pstress * 0.01 * 0.6242 / 10.0
|
163
160
|
atoms = read_vasp('POSCAR_'+str(index))
|
164
161
|
atoms.calc = calc
|
165
|
-
|
166
|
-
ucf = ExpCellFilter(atoms, scalar_pressure=aim_stress)
|
162
|
+
ucf = UnitCellFilter(atoms, scalar_pressure=aim_stress)
|
167
163
|
# optimization
|
168
164
|
opt = LBFGS(ucf)
|
169
165
|
opt.run(fmax=fmax,steps=Opt_Step)
|
@@ -1,11 +1,11 @@
|
|
1
|
-
ion_CSP/__init__.py,sha256=
|
1
|
+
ion_CSP/__init__.py,sha256=jMZJMwgE30wGC-Ej_2ghlbE9UnLRCcLb0W-3kQ4mVnM,356
|
2
2
|
ion_CSP/__main__.py,sha256=XlNCx5eMSrL7yld9ddSYXhjXvg2ZYGD_uk9LdqNabvs,74
|
3
3
|
ion_CSP/convert_SMILES.py,sha256=i_f9cbCAr6SpZUvClZRAPGjK-_v9U9lFGA-06i041Tk,15755
|
4
4
|
ion_CSP/empirical_estimate.py,sha256=aSidH3jyoG39ky-kDNUY0ix8hPefeVVWmPABVjTmy0g,37866
|
5
5
|
ion_CSP/gen_opt.py,sha256=EEMIPZ7oEOR9iGLRL-eJleHaWBiOK90o4a8_go9f-9o,21468
|
6
6
|
ion_CSP/identify_molecules.py,sha256=GxDWq815Bk_Fq_SR8fe-dbrbEi1YgATVa7UINw3hAu4,5535
|
7
7
|
ion_CSP/log_and_time.py,sha256=Db53LAM2KH_ty6M9_5FF8xDGiULgExh7pcKOvFtS7DQ,11697
|
8
|
-
ion_CSP/mlp_opt.py,sha256=
|
8
|
+
ion_CSP/mlp_opt.py,sha256=DP8gldX07O2jXDhopUOodh8nqa5JeusLJjChTtt_DSE,7049
|
9
9
|
ion_CSP/read_mlp_density.py,sha256=0fymqrpqoAmWosnyoNwH3GAvml42skZp_6SLvrXN0SI,12232
|
10
10
|
ion_CSP/steps_opt_monitor.sh,sha256=1klPjnK0gqkDbvI9PtjdK5qidJ5G0Mo8q1SfrlLW5xM,3330
|
11
11
|
ion_CSP/task_manager.py,sha256=62E5s2bkVkRJiKroSGWVfTNYBRbzVcMPqTfZ1FPN61A,16654
|
@@ -35,9 +35,9 @@ ion_CSP/run/run_gen_opt.py,sha256=_Zcsu0FkuZTfiGKSWNaK17LiyQ3qrP30F66UN5QemCo,27
|
|
35
35
|
ion_CSP/run/run_read_mlp_density.py,sha256=aSJjWS1jH-D7qzx7RnpMPSTH7KEZp2b35dg1b2OQSCM,1864
|
36
36
|
ion_CSP/run/run_upload_download.py,sha256=wuTAdy4bgdduD7TJtgHwo_fTpHKlkAwmgRknClDLYDo,2436
|
37
37
|
ion_CSP/run/run_vasp_processing.py,sha256=hziE4cZwmIWvVaZtwHn9Dl35apYSLlMvSVIbCyd5mFg,1612
|
38
|
-
ion_csp-2.2.
|
39
|
-
ion_csp-2.2.
|
40
|
-
ion_csp-2.2.
|
41
|
-
ion_csp-2.2.
|
42
|
-
ion_csp-2.2.
|
43
|
-
ion_csp-2.2.
|
38
|
+
ion_csp-2.2.3.dist-info/licenses/LICENSE,sha256=yeL9PshY_rGAt3GKqn8U7NafHifpmZipb-Owu0DDrHo,1070
|
39
|
+
ion_csp-2.2.3.dist-info/METADATA,sha256=hCXl6gqOMqsmHyptied9QekguXqh-YctkAX5Y9QR124,6314
|
40
|
+
ion_csp-2.2.3.dist-info/WHEEL,sha256=_zCd3N1l69ArxyTb8rzEoP9TpbYXkqRFSNOD5OuxnTs,91
|
41
|
+
ion_csp-2.2.3.dist-info/entry_points.txt,sha256=NexQJDs9f69kJA2DgoU6tsA3V8a66nadJRem1U_c_6g,54
|
42
|
+
ion_csp-2.2.3.dist-info/top_level.txt,sha256=aYZa43dDebjLpWPN6bDIlBb6BVwA8gk4ajEjDDK9b9I,8
|
43
|
+
ion_csp-2.2.3.dist-info/RECORD,,
|
File without changes
|
File without changes
|
File without changes
|
File without changes
|