impy-array 2.4.8__py3-none-any.whl → 2.4.9__py3-none-any.whl

impy/__init__.py

@@ -1,4 +1,4 @@
-__version__ = "2.4.8"
+__version__ = "2.4.9"
 __author__ = "Hanjin Liu"
 __email__ = "liuhanjin-sc@g.ecc.u-tokyo.ac.jp"
 

impy/arrays/_utils/_filters.py

@@ -52,6 +52,8 @@ binary_closing = get_func("binary_closing")
 closing = get_func("grey_closing")
 gaussian_filter = get_func("gaussian_filter")
 median_filter = get_func("median_filter")
+min_filter = get_func("minimum_filter")
+max_filter = get_func("maximum_filter")
 spline_filter = get_func("spline_filter")
 convolve = get_func("convolve")
 white_tophat = get_func("white_tophat")
@@ -69,6 +71,8 @@ if TYPE_CHECKING:
     closing = scipy_ndi.grey_closing
     gaussian_filter = scipy_ndi.gaussian_filter
     median_filter = scipy_ndi.median_filter
+    min_filter = scipy_ndi.minimum_filter
+    max_filter = scipy_ndi.maximum_filter
     spline_filter = scipy_ndi.spline_filter
     convolve = scipy_ndi.convolve
     white_tophat = scipy_ndi.white_tophat

impy/arrays/imgarray.py

@@ -708,8 +708,7 @@ class ImgArray(LabeledArray):
     @dims_to_spatial_axes
     @check_input_and_output
     def structure_tensor_eig(self, sigma: nDFloat = 1, *, dims: Dims = None)-> tuple[ImgArray, ImgArray]:
-        """
-        Calculate structure tensor's eigenvalues and eigenvectors.
+        """Calculate structure tensor's eigenvalues and eigenvectors.
 
         Parameters
         ----------
@@ -749,8 +748,7 @@ class ImgArray(LabeledArray):
         dims: Dims = None,
         update: bool = False
     ) -> ImgArray:
-        """
-        Sobel filter. This filter is useful for edge detection.
+        """Edge detection such as Sobel filter.
 
         Parameters
         ----------
@@ -785,8 +783,7 @@ class ImgArray(LabeledArray):
         dims: Dims = None,
         update: bool = False,
     ) -> ImgArray:
-        """
-        Butterworth low-pass filter.
+        """Butterworth low-pass filter.
 
         Parameters
         ----------
@@ -831,9 +828,10 @@ class ImgArray(LabeledArray):
         dims: Dims = None,
         update: bool = False
     ) -> ImgArray:
-        """
-        Butterworth low-pass filter in real space. Butterworth kernel is created first using inverse
-        Fourier transform of weight function.
+        """Butterworth low-pass filter in real space.
+
+        Butterworth kernel is created first using inverse Fourier transform of weight
+        function.
 
         Parameters
         ----------
@@ -876,8 +874,7 @@ class ImgArray(LabeledArray):
         dims: Dims = None,
         update: bool = False
     ) -> ImgArray:
-        """
-        Butterworth high-pass filter.
+        """Butterworth high-pass filter.
 
         Parameters
         ----------
@@ -918,8 +915,7 @@ class ImgArray(LabeledArray):
         dims: Dims = None,
         update: bool = False
     ):
-        """
-        Butterworth band-pass filter.
+        """Butterworth band-pass filter.
 
         Parameters
         ----------
@@ -963,8 +959,7 @@ class ImgArray(LabeledArray):
         dims: Dims = None,
         update: bool = False,
     ) -> ImgArray:
-        """
-        General linear convolution by running kernel filtering.
+        """General linear convolution by running kernel filtering.
 
         Parameters
         ----------
@@ -998,8 +993,7 @@ class ImgArray(LabeledArray):
         dims: Dims = None,
         update: bool = False,
     ) -> ImgArray:
-        """
-        Morphological erosion.
+        """Morphological erosion.
 
         If input is binary image, the running function will automatically switched to
         ``binary_erosion`` to speed up calculation.
@@ -1039,8 +1033,9 @@ class ImgArray(LabeledArray):
         dims: Dims = None,
         update: bool = False,
     ) -> ImgArray:
-        """
-        Morphological dilation. If input is binary image, the running function will automatically switched to
+        """Morphological dilation.
+
+        If input is binary image, the running function will automatically switched to
         ``binary_dilation`` to speed up calculation.
 
         Parameters
@@ -1078,8 +1073,9 @@ class ImgArray(LabeledArray):
         dims: Dims = None,
         update: bool = False,
     ) -> ImgArray:
-        """
-        Morphological opening. If input is binary image, the running function will automatically switched to
+        """Morphological opening.
+
+        If input is binary image, the running function will automatically switched to
         ``binary_opening`` to speed up calculation.
 
         Parameters
@@ -1117,8 +1113,7 @@ class ImgArray(LabeledArray):
         dims: Dims = None,
         update: bool = False,
     ) -> ImgArray:
-        """
-        Morphological closing.
+        """Morphological closing.
 
         If input is binary image, the running function will automatically switched to
         ``binary_closing`` to speed up calculation.
@@ -1158,8 +1153,7 @@ class ImgArray(LabeledArray):
         dims: Dims = None,
         update: bool = False,
     ) -> ImgArray:
-        """
-        Tophat morphological image processing. This is useful for background subtraction.
+        """Tophat morphological image processing. This is useful for background subtraction.
 
         Parameters
         ----------
@@ -1190,8 +1184,7 @@ class ImgArray(LabeledArray):
         *,
         dims: Dims = None
     ) -> ImgArray:
-        """
-        Smoothen binary mask image at its edges. This is useful to make a "soft mask".
+        """Smoothen binary mask image at its edges. This is useful to make a "soft mask".
 
         This method applies erosion/dilation to a binary image and then smooth its edges by Gaussian.
         The total value is always larger after Gaussian smoothing.
@@ -1243,8 +1236,7 @@ class ImgArray(LabeledArray):
         cval: float = 0.0,
         dims: Dims = None,
         update: bool = False) -> ImgArray:
-        """
-        Mean filter. Kernel is filled with same values.
+        """Mean filter. Kernel is filled with same values.
 
         Parameters
         ----------
@@ -1264,6 +1256,65 @@ class ImgArray(LabeledArray):
             kwargs=dict(mode=mode, cval=cval),
         )
 
+
+    @_docs.write_docs
+    @dims_to_spatial_axes
+    @check_input_and_output
+    def min_filter(
+        self,
+        radius: float = 1,
+        *,
+        mode: PaddingMode = "reflect",
+        cval: float = 0.0,
+        dims: Dims = None,
+    ) -> ImgArray:
+        """Minimum filter.
+
+        Parameters
+        ----------
+        {radius}{mode}{cval}{dims}
+
+        Returns
+        -------
+        ImgArray
+            Filtered image
+        """
+        disk = _structures.ball_like(radius, len(dims))
+        return self.as_float()._apply_dask(
+            _filters.min_filter,
+            c_axes=complement_axes(dims, self.axes),
+            kwargs=dict(footprint=disk, mode=mode, cval=cval),
+        )
+
+    @_docs.write_docs
+    @dims_to_spatial_axes
+    @check_input_and_output
+    def max_filter(
+        self,
+        radius: float = 1,
+        *,
+        mode: PaddingMode = "reflect",
+        cval: float = 0.0,
+        dims: Dims = None,
+    ) -> ImgArray:
+        """Maximum filter.
+
+        Parameters
+        ----------
+        {radius}{mode}{cval}{dims}
+
+        Returns
+        -------
+        ImgArray
+            Filtered image
+        """
+        disk = _structures.ball_like(radius, len(dims))
+        return self.as_float()._apply_dask(
+            _filters.max_filter,
+            c_axes=complement_axes(dims, self.axes),
+            kwargs=dict(footprint=disk, mode=mode, cval=cval),
+        )
+
     @_docs.write_docs
     @dims_to_spatial_axes
     @check_input_and_output

impy/arrays/lazy.py

@@ -890,6 +890,47 @@ class LazyImgArray(AxesMixin):
             kwargs=dict(footprint=disk, mode=mode, cval=cval),
         )
 
+    @_docs.copy_docs(ImgArray.min_filter)
+    @dims_to_spatial_axes
+    @same_dtype
+    @check_input_and_output_lazy
+    def min_filter(
+        self,
+        radius: float = 1,
+        *,
+        mode: PaddingMode = "reflect",
+        cval: float = 0,
+        dims: Dims = None,
+        update: bool = False
+    ) -> LazyImgArray:
+        disk = _structures.ball_like(radius, len(dims))
+        return self._apply_map_overlap(
+            xp.ndi.minimum_filter,
+            depth=_ceilint(radius),
+            c_axes=complement_axes(dims, self.axes),
+            kwargs=dict(footprint=disk, mode=mode, cval=cval),
+        )
+
+    @_docs.copy_docs(ImgArray.max_filter)
+    @dims_to_spatial_axes
+    @same_dtype
+    @check_input_and_output_lazy
+    def max_filter(
+        self,
+        radius: float = 1,
+        *,
+        mode: PaddingMode = "reflect",
+        cval: float = 0,
+        dims: Dims = None,
+        update: bool = False
+    ) -> LazyImgArray:
+        disk = _structures.ball_like(radius, len(dims))
+        return self._apply_map_overlap(
+            xp.ndi.maximum_filter,
+            depth=_ceilint(radius),
+            c_axes=complement_axes(dims, self.axes),
+            kwargs=dict(footprint=disk, mode=mode, cval=cval),
+        )
 
     @_docs.copy_docs(ImgArray.std_filter)
     @dims_to_spatial_axes

impy/random.py

@@ -184,10 +184,10 @@ class ImageGenerator:
     ) -> ImgArray:
         size, name, axes = _normalize_like(size, name, axes, like)
 
-        arr = self._rng.normal(loc=loc, scale=scale, size=size).astype(np.float32)
+        arr = self._rng.normal(loc=loc, scale=scale, size=size)
         if np.isscalar(arr):
             return arr
-        return asarray(xp.asnumpy(arr), axes=axes, name=name)
+        return asarray(xp.asnumpy(arr), axes=axes, name=name).astype(np.float32)
 
     def poisson(
         self,

{impy_array-2.4.8.dist-info → impy_array-2.4.9.dist-info}/METADATA

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: impy-array
-Version: 2.4.8
+Version: 2.4.9
 Summary: Speed up coding/extending image analysis in Python.
 Project-URL: Download, https://github.com/hanjinliu/impy
 Author-email: Hanjin Liu <liuhanjin-sc@g.ecc.u-tokyo.ac.jp>

{impy_array-2.4.8.dist-info → impy_array-2.4.9.dist-info}/RECORD

@@ -1,4 +1,4 @@
-impy/__init__.py,sha256=caLalIZHTPzZHRUtqTEO4bT5iBHCcz_FNVftU3Amqyg,1638
+impy/__init__.py,sha256=hoRBdnPuuB2oQ4-ECrHuGN3vObmgt0R40T_uxML6VwQ,1638
 impy/__main__.py,sha256=BAQkQ4X8EFo42pbNx__EqpZ5KL4MTfTUWsVbJIQF0O0,4974
 impy/_const.py,sha256=uNHxxY5ltZuOsJWpwlBWFmUM0QfMgIk5WODqlHuBomo,3700
 impy/_types.py,sha256=gO4l0hx9qxe6eI0PyC4ukW3k4IYxCEZ9gT-rQ3jj3zU,808
@@ -7,16 +7,16 @@ impy/binder.py,sha256=CTMb11g6uYDVVQV5Wtef865IO0G2V3vGXc8SiGYRD5k,9651
 impy/collections.py,sha256=2e55bLjZN7W4LFUCkyxekcDfLwZodMaU4JG5NQ3RS54,10946
 impy/core.py,sha256=itTwflodeyUJf5A4mK-XyrrQ1TGiFz0QU4w8Eel5iFg,25615
 impy/correlation.py,sha256=Yw1T_0eL9FmsMcnCysc49oRJQMn8ho5z9bAzNg5i59Y,28232
-impy/random.py,sha256=c9zlFn8M1ugZyfYlEVOqg0u4DGHS-EnnyrKfjPXOaxU,7004
+impy/random.py,sha256=MQl0ViN6A7xDtM8BS4gbv1atgPKsrmp0TXzV1OtsDlU,7004
 impy/roi.py,sha256=p9ttjBl5SGHHXj0xg5UjPlg_V9cY3MnNZxFfYIjTYsg,14164
 impy/arrays/__init__.py,sha256=IHpTBIJysomS64rOZsv960YBmM1vc4M-asTSs1OJBWg,454
 impy/arrays/_imshow.py,sha256=6mJ_PDqmE4UZO9e9SUgyY_YrzQdR2QKlTG7KF_aC_tI,6949
 impy/arrays/axesmixin.py,sha256=9PK6kMZAfNVipTL65aF5-yR3qt2fy4ATl1OACXLYrAE,10596
 impy/arrays/big.py,sha256=tHNijyPgyIfTltLP3hQwZdHOpSX3IwG5DHPamajZ8Kg,2745
-impy/arrays/imgarray.py,sha256=Rg1HVIWE1JwCQbDpRTxQb89HoF77gxvXVOqZh6mY5i0,159103
+impy/arrays/imgarray.py,sha256=jJQTAWxua0-MmQNIzfL1ducm6VxQeZQEeuSTSMYFNkY,160457
 impy/arrays/label.py,sha256=l0SZXcZxU8qwUgj0QZPZ32XsNaoBtenlrn6hNR03SPI,6406
 impy/arrays/labeledarray.py,sha256=vbWUONnMBOXwLZBHlO2fjl9zqF1nljVdq1y0EFc2ias,59456
-impy/arrays/lazy.py,sha256=wBjWCeCHZpx5x1Xb9RFtyKhrMIeDeqBhSw3FkSA8b3E,60145
+impy/arrays/lazy.py,sha256=XrslWD3Eg0QSD3pKkbvuGDyHJpL-gGsNxbJwTIByuYU,61437
 impy/arrays/phasearray.py,sha256=IojWaNs5sEujn6Lhgqe00H0xF-4CZEFWt5cVW6U_DWQ,13981
 impy/arrays/specials.py,sha256=4sNg_zeJUce_rwnasPoyL2eZ0-gx_4Z-KwitmLB4a5k,7896
 impy/arrays/tiled.py,sha256=T44sS6v1Ovln1z1g61Eg8irgZR1Jmpb6BCY3nS6TmDE,9400
@@ -24,7 +24,7 @@ impy/arrays/_utils/__init__.py,sha256=M5HogfyUBvV8kp-X1ZthS8vDLUP7-O2f9Gvsc1ZXdT
 impy/arrays/_utils/_corr.py,sha256=ThGQV3KSv8ir8BTWDoV83ysalPB2p--LmSCv-J9qq2w,10047
 impy/arrays/_utils/_deconv.py,sha256=5UM7CoRpWphEYuuiq89bmFCKU-n1G_ArMCkDq7tamdQ,2754
 impy/arrays/_utils/_docs.py,sha256=AT6tRxXcX433FCfPXhE9wsaeduy_Um44KOqrYHYTFZE,4968
-impy/arrays/_utils/_filters.py,sha256=aigQnaURbUnmOXGDxkWksISWQbKAUdwtS8kzbaMzgoQ,7226
+impy/arrays/_utils/_filters.py,sha256=pVkL4tuH8u51sc4fMS9U1edne4GdWYB9_l31ZtXkrtQ,7394
 impy/arrays/_utils/_glcm.py,sha256=AoUP-p1MPtAzP0Eyt_DEE_wZYwezNICzdkXMBY-OEBo,4150
 impy/arrays/_utils/_linalg.py,sha256=06jnv-P6nwUjYVTHX2f9i-KDSYZ0bxwNfWWP8A8e_Vw,3233
 impy/arrays/_utils/_misc.py,sha256=vyyw-G4iu7RiNRAJWyvWWGRalWlcMy5Kg_0VvLBBPq8,2953
@@ -64,8 +64,8 @@ impy/utils/utilcls.py,sha256=3Td9G2ZkU4C0BiW2LH0sq7RBjdco_BtyxNr-s-seLhs,437
 impy/viewer/__init__.py,sha256=MH-jhpFxP8JVJwUzbKMLRhhWSEYavVHuik9uOS3dDNU,292
 impy/viewer/utils.py,sha256=_RWV9LePbmYeC8qRBUBf3qG70BaLOndlzRLcvUYgTtE,12248
 impy/viewer/viewer.py,sha256=Sfq-obSLoHkBkIW0NDWCxEEaX7-YsC4ifAJ-nxpvJws,17632
-impy_array-2.4.8.dist-info/METADATA,sha256=PlwAqwu-GA82Idy3iz7sLzdrS47qkWGXoiTfzs7lqAY,7567
-impy_array-2.4.8.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
-impy_array-2.4.8.dist-info/entry_points.txt,sha256=reyrgy4odXvi1CcPOIIyRYBmsNGG2tO7ZkFOdG5CBkU,44
-impy_array-2.4.8.dist-info/licenses/LICENSE,sha256=rpxKafH9r42sxLLYYB5VbZBHOdtYeLuYJjVU1LBwrxk,1546
-impy_array-2.4.8.dist-info/RECORD,,
+impy_array-2.4.9.dist-info/METADATA,sha256=2bE_GlsO3-oxky5vfOAddrBg5-uDzoIYYjihUqzzEiQ,7567
+impy_array-2.4.9.dist-info/WHEEL,sha256=qtCwoSJWgHk21S1Kb4ihdzI2rlJ1ZKaIurTj_ngOhyQ,87
+impy_array-2.4.9.dist-info/entry_points.txt,sha256=reyrgy4odXvi1CcPOIIyRYBmsNGG2tO7ZkFOdG5CBkU,44
+impy_array-2.4.9.dist-info/licenses/LICENSE,sha256=rpxKafH9r42sxLLYYB5VbZBHOdtYeLuYJjVU1LBwrxk,1546
+impy_array-2.4.9.dist-info/RECORD,,