immucellai2 2.1.32__py3-none-any.whl → 2.1.33__py3-none-any.whl

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Files changed (6) hide show
  1. immucellai2/Deconvolution.py +10 -9
  2. {immucellai2-2.1.32.dist-info → immucellai2-2.1.33.dist-info}/METADATA +1 -1
  3. {immucellai2-2.1.32.dist-info → immucellai2-2.1.33.dist-info}/RECORD +6 -6
  4. {immucellai2-2.1.32.dist-info → immucellai2-2.1.33.dist-info}/WHEEL +0 -0
  5. {immucellai2-2.1.32.dist-info → immucellai2-2.1.33.dist-info}/entry_points.txt +0 -0
  6. {immucellai2-2.1.32.dist-info → immucellai2-2.1.33.dist-info}/top_level.txt +0 -0
immucellai2/Deconvolution.py CHANGED
@@ -256,17 +256,18 @@ def MainRun(RunObject, seed=42, MultithreadModule = 'joblib'):
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  EnvironmentRun = RunObject.EnvironmentRun
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  RecordTime = CLASS_FOR_TIME()
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  nsamples = len(RunObject.SampleList)
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+ SampleNameToIndex = {name: idx for idx, name in enumerate(RunObject.SampleList)}
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  parameterlist = []
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- #CelltypesReferenceMatrix = RunObject.CelltypesReferenceMatrix
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- for sample_index in range(nsamples):
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- SampleName = RunObject.SampleList[sample_index]
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+ for SampleNameii in range(nsamples):
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+ SampleName = RunObject.SampleList[SampleNameii]
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+ SampleIndex = SampleNameToIndex[SampleName]
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  parameterlist.append((
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- (RunObject.EmceeParameter).mycopy(),
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- RunObject.CelltypesReferenceMatrix ,
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- RunObject.SamplesBulkRNAseqExpression[sample_index],
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- RunObject.SampleList[sample_index],
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- RunObject.MAPorMLE
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- ))
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+ RunObject.EmceeParameter.mycopy(),
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+ RunObject.CelltypesReferenceMatrix,
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+ RunObject.SamplesBulkRNAseqExpression[SampleIndex],
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+ SampleName,
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+ RunObject.MAPorMLE
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+ ))
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  MultiprocessingReturnValue = []
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  if MultithreadModule == 'joblib':
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  try:
{immucellai2-2.1.32.dist-info → immucellai2-2.1.33.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: immucellai2
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- Version: 2.1.32
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+ Version: 2.1.33
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  Summary: A tool for immune cell type deconvolution
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  Home-page: https://github.com/VyvyanYjm/ImmuCellAI2.0
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  Author: YangJingmin
{immucellai2-2.1.32.dist-info → immucellai2-2.1.33.dist-info}/RECORD RENAMED
@@ -1,4 +1,4 @@
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- immucellai2/Deconvolution.py,sha256=Ai3cE_YhVXyu5OWymnNbRqGWUHdXiTE8FVSmu5pdNvM,12507
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+ immucellai2/Deconvolution.py,sha256=HoG-kT3dkMfDpJVMunihv2Qp0P4OnOpPwKj5e9EDTg8,12549
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  immucellai2/Drawplot.py,sha256=YnUleceEyim9SsTiU18mbAMcjOH9ovBXJW3pwXxA7as,5136
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  immucellai2/ObtainCategory.py,sha256=N1F_yUHoaIisnlms4aNNJ2UIzZDI2TIc0t7IRLtM7So,7008
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  immucellai2/PrepareData.py,sha256=tJWtQbfFfXszAQMnAmyzFrXB40wgHl48WP3WZKfeifg,5935
@@ -9,8 +9,8 @@ immucellai2/myconfig/Celltype.category,sha256=l_5vspGpyDbuaQ7QOLIQjSs4xb6x6_pvvt
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  immucellai2/myconfig/MarkerUsedDeconvolution.txt,sha256=33gCFD1_Clis7NFaQTUHc5s7BXoN61jWgWPgjT-m0n0,60756
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  immucellai2/myconfig/reference_normalCelltypes.txt,sha256=zhKP5Z1TgVyB6ijIamjM1ETmuwQgRATofO-0ds89gP4,39107049
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  immucellai2/myconfig/reference_tumorCelltypes.txt,sha256=xYgjehHIXb5re20bmXeoqxfyvQmgpr4y-0ysCVnEeI8,40893156
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- immucellai2-2.1.32.dist-info/METADATA,sha256=w38DgKWAAk7CitVbgQCeFPrzutbR6d--KeHeRIsVhTM,1662
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- immucellai2-2.1.32.dist-info/WHEEL,sha256=wUyA8OaulRlbfwMtmQsvNngGrxQHAvkKcvRmdizlJi0,92
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- immucellai2-2.1.32.dist-info/entry_points.txt,sha256=asskhaErD37JB_X_4TPB1itaIytWCU-RHFIyVGQ8Jbw,62
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- immucellai2-2.1.32.dist-info/top_level.txt,sha256=9r84YbXmTdnKZnK2OGrTsgYPFoSBdk4EkeieDg-7_DY,12
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- immucellai2-2.1.32.dist-info/RECORD,,
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+ immucellai2-2.1.33.dist-info/METADATA,sha256=Hsc5rzIfRogH5piGI4G5uYmLXZ901M5JyTPpMA03yY4,1662
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+ immucellai2-2.1.33.dist-info/WHEEL,sha256=wUyA8OaulRlbfwMtmQsvNngGrxQHAvkKcvRmdizlJi0,92
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+ immucellai2-2.1.33.dist-info/entry_points.txt,sha256=asskhaErD37JB_X_4TPB1itaIytWCU-RHFIyVGQ8Jbw,62
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+ immucellai2-2.1.33.dist-info/top_level.txt,sha256=9r84YbXmTdnKZnK2OGrTsgYPFoSBdk4EkeieDg-7_DY,12
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+ immucellai2-2.1.33.dist-info/RECORD,,