immucellai2 2.1.31__py3-none-any.whl → 2.1.32__py3-none-any.whl

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Files changed (6) hide show
  1. immucellai2/myclasses.py +4 -10
  2. {immucellai2-2.1.31.dist-info → immucellai2-2.1.32.dist-info}/METADATA +1 -1
  3. {immucellai2-2.1.31.dist-info → immucellai2-2.1.32.dist-info}/RECORD +6 -6
  4. {immucellai2-2.1.31.dist-info → immucellai2-2.1.32.dist-info}/WHEEL +0 -0
  5. {immucellai2-2.1.31.dist-info → immucellai2-2.1.32.dist-info}/entry_points.txt +0 -0
  6. {immucellai2-2.1.31.dist-info → immucellai2-2.1.32.dist-info}/top_level.txt +0 -0
immucellai2/myclasses.py CHANGED
@@ -99,16 +99,10 @@ class CLASS_FOR_RUNRESULT(object):
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  self.EmceeFunction2( McSamplingResultList[sampleii, :, :, :] )
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  return NewMcSamplingResultList
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  def optimized_calculation(self, FlatSamplingResultOne, nCellType):
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- row_sums = FlatSamplingResultOne.sum(axis=1, keepdims=True)
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- row_sums_safe = row_sums + 1e-10
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- if FlatSamplingResultOne.shape[1] == nCellType:
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- return FlatSamplingResultOne / row_sums_safe
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- elif FlatSamplingResultOne.shape[1] + 1 == nCellType:
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- normalized = FlatSamplingResultOne / row_sums_safe
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- last_col = 1 - normalized.sum(axis=1, keepdims=True)
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- return numpy.column_stack((normalized, last_col))
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- else:
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- raise ValueError(f"Dimension mismatch: input {FlatSamplingResultOne.shape[1]} columns, target {nCellType}columns")
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+ if FlatSamplingResultOne.shape[1] == nCellType:
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+ return FlatSamplingResultOne / FlatSamplingResultOne.sum(axis=1)[:, None]
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+ elif FlatSamplingResultOne.shape[1] + 1 == nCellType:
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+ return numpy.column_stack((FlatSamplingResultOne, 1 - FlatSamplingResultOne.sum(axis=1)))
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  def EmceeFunction2(self, FlatSamplingResultList):
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  fshape = FlatSamplingResultList.shape
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  nCellType = len(self.CellType)
{immucellai2-2.1.31.dist-info → immucellai2-2.1.32.dist-info}/METADATA RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: immucellai2
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- Version: 2.1.31
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+ Version: 2.1.32
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  Summary: A tool for immune cell type deconvolution
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  Home-page: https://github.com/VyvyanYjm/ImmuCellAI2.0
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  Author: YangJingmin
{immucellai2-2.1.31.dist-info → immucellai2-2.1.32.dist-info}/RECORD RENAMED
@@ -4,13 +4,13 @@ immucellai2/ObtainCategory.py,sha256=N1F_yUHoaIisnlms4aNNJ2UIzZDI2TIc0t7IRLtM7So
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  immucellai2/PrepareData.py,sha256=tJWtQbfFfXszAQMnAmyzFrXB40wgHl48WP3WZKfeifg,5935
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  immucellai2/Time.py,sha256=et3aAqyVDKwP5_tdGIwA6yxdXRbbYemc9wEaPHpQCck,572
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  immucellai2/__init__.py,sha256=wi7UznfkskCvT4yj-u1RuyN0SK1tZptpXffIaQW2XkQ,3055
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- immucellai2/myclasses.py,sha256=9Rgil00HX_RfOhvpdvUZDsvFi7RdIfXay4V3lRcQsQ8,12409
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+ immucellai2/myclasses.py,sha256=LFVMgIwraRrw_uv4g5BG-799AiH3apHXc-mBlAlYRd4,12120
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  immucellai2/myconfig/Celltype.category,sha256=l_5vspGpyDbuaQ7QOLIQjSs4xb6x6_pvvtnP709CVzQ,5530
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  immucellai2/myconfig/MarkerUsedDeconvolution.txt,sha256=33gCFD1_Clis7NFaQTUHc5s7BXoN61jWgWPgjT-m0n0,60756
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  immucellai2/myconfig/reference_normalCelltypes.txt,sha256=zhKP5Z1TgVyB6ijIamjM1ETmuwQgRATofO-0ds89gP4,39107049
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  immucellai2/myconfig/reference_tumorCelltypes.txt,sha256=xYgjehHIXb5re20bmXeoqxfyvQmgpr4y-0ysCVnEeI8,40893156
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- immucellai2-2.1.31.dist-info/METADATA,sha256=SCPG7R6NhSKAaAkxPkANPa8LVvs4O2owcR-GB6U4FYg,1662
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- immucellai2-2.1.31.dist-info/WHEEL,sha256=wUyA8OaulRlbfwMtmQsvNngGrxQHAvkKcvRmdizlJi0,92
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- immucellai2-2.1.31.dist-info/entry_points.txt,sha256=asskhaErD37JB_X_4TPB1itaIytWCU-RHFIyVGQ8Jbw,62
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- immucellai2-2.1.31.dist-info/top_level.txt,sha256=9r84YbXmTdnKZnK2OGrTsgYPFoSBdk4EkeieDg-7_DY,12
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- immucellai2-2.1.31.dist-info/RECORD,,
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+ immucellai2-2.1.32.dist-info/METADATA,sha256=w38DgKWAAk7CitVbgQCeFPrzutbR6d--KeHeRIsVhTM,1662
13
+ immucellai2-2.1.32.dist-info/WHEEL,sha256=wUyA8OaulRlbfwMtmQsvNngGrxQHAvkKcvRmdizlJi0,92
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+ immucellai2-2.1.32.dist-info/entry_points.txt,sha256=asskhaErD37JB_X_4TPB1itaIytWCU-RHFIyVGQ8Jbw,62
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+ immucellai2-2.1.32.dist-info/top_level.txt,sha256=9r84YbXmTdnKZnK2OGrTsgYPFoSBdk4EkeieDg-7_DY,12
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+ immucellai2-2.1.32.dist-info/RECORD,,