imdclient 0.1.0__py3-none-any.whl → 0.1.2__py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
@@ -1,12 +1,12 @@
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- imdclient/IMDClient.py,sha256=2P4wgv8fZjZ_3JFLsm3L2JxxAlTAiWTZtXr5vRWJHf0,30687
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+ imdclient/IMDClient.py,sha256=DavJNzgCvSCjILhOj4-FHOOYPPG55BIBiDauh9xZM9Y,30518
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  imdclient/IMDProtocol.py,sha256=jm7ehwfDCcs-zWHjZ2V2KpAWdGhD4JSy7RVtCSF0818,4045
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- imdclient/IMDREADER.py,sha256=V8yfkQkKYyWwYh0V2m7EOg0yzdsUKmQAqDmIlzgiiIY,3712
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+ imdclient/IMDREADER.py,sha256=nsYSHNjqoCY64XRj-SXVmv4nfbebAcdQSEm0OrEafGY,3828
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  imdclient/__init__.py,sha256=Pa5h6Fjyvyxf3ECzO43pcmLm3Vk-vOuEb5Gi6TDWhds,339
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  imdclient/backends.py,sha256=QmHjwYbmvFVHz-uFgpSOA0UmZTZqiMGqWMO7B8wr1zs,10368
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  imdclient/results.py,sha256=2MyjFdQMW7BfiHhG5X6wQwMVrF_0mKYFnv907lgLMas,9920
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  imdclient/streamanalysis.py,sha256=Qq0h_WPO-wb0_lP8jTRHe0HX7UDZNgJFA6C4PZdUmK8,38385
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  imdclient/streambase.py,sha256=rwhdyC2V3_9pSz_6rNwjSc4MNToI9S318OH7AH0arHA,6176
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- imdclient/utils.py,sha256=kd1e5nqEOb46hCR_9ITjDB30j56mXFbV0u_wMv0pMco,3330
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+ imdclient/utils.py,sha256=VWxk4vQ6hzxoYRu-8Ge8fJG-EitJwgJR93wOWCvzY-0,3308
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  imdclient/data/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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  imdclient/data/gromacs/md/gromacs_struct.gro,sha256=kt4vE10iF_1RbeyTogmYmIY9yKJacofrzNT-hPHGyL8,1459301
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  imdclient/data/gromacs/md/gromacs_v3.top,sha256=AXFEDjvz5Qqq-VECffimdeEvhD6L-H0SFPILW-6Sums,348329
@@ -23,20 +23,20 @@ imdclient/data/namd/md/alanin.psf,sha256=VhCZeGFhpUa8yN5iEL19zlVjqIJg2JIdPzhazpR
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  imdclient/data/namd/md/namd_v3.namd,sha256=KWH3RXsa0aeA9dYSz9CnUFHcDGbAFnB3yLoYaLtCiBs,720
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  imdclient/tests/__init__.py,sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU,0
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  imdclient/tests/base.py,sha256=OsoZm4T5E7p4XEQ6F4Je0g3vgpa8wcPQgKbWaC2AttQ,3761
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- imdclient/tests/conftest.py,sha256=k_QOYMf8Q70ebP1tRKclIYYM9DE6XKvP5NiJgllu8w8,1255
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+ imdclient/tests/conftest.py,sha256=ERj5d4roxWGqpXS8-W-LFB_INEkb_4oz5ous92u2yK4,1377
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  imdclient/tests/datafiles.py,sha256=36Mip1wx_LHukJIaHu0Ew-F0XFIEXNEyXg2wRzQLDaM,1118
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  imdclient/tests/server.py,sha256=7KqzDg74d7Oe617jctB-rDGvEUNSaT9agkp9SiEtiME,6978
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  imdclient/tests/test_gromacs.py,sha256=4HbgK6lnE6G35bvYDpFiQbLVz7-q9BB9FKsgjeCa9do,942
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  imdclient/tests/test_imdclient.py,sha256=99u_xIHNMCCJSew5IoPndxAa5N3F-r37jqFProkl4Ts,5336
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- imdclient/tests/test_imdreader.py,sha256=TID3iFOZRY3wrHobYkP5FNYIYwAt3c2SIc8ACkTSotY,22954
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+ imdclient/tests/test_imdreader.py,sha256=psucJE9rpnbOXy1onVY2Vp24myLY2gAgPpoUPAwBBMI,22966
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  imdclient/tests/test_lammps.py,sha256=NZqX0Hj65I3A33LpejZThZTo-0PuI_4x_wODzJ9o490,957
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- imdclient/tests/test_manual.py,sha256=2YNRkpaGdI5-Pro6xSCujhwZHsHf0C1Ehu2v2dk3lbM,2507
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+ imdclient/tests/test_manual.py,sha256=tDnqBnET1wGQhw0V2Fs_G_26Tvh6zbyGgW5WJAXROgM,3422
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  imdclient/tests/test_namd.py,sha256=69F27qUH2GmdQMvm3RQHQFS1aAl8JiNz16SN8D6mp-E,962
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- imdclient/tests/test_stream_analysis.py,sha256=BS3U-FwBc2shYAsDHvUX8H6Zioo_tUNGirkzWcuMXEY,1723
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+ imdclient/tests/test_stream_analysis.py,sha256=E9rsG-YrdUs9Kd_VWxT0lU6Z_2xUkD6MpHbeuoqRRvE,1729
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  imdclient/tests/utils.py,sha256=i5GviFFdIaDsAOv8giP_jVJUeGww86nD0l2brB4_jRM,890
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- imdclient-0.1.0.dist-info/AUTHORS.md,sha256=R4JTI7mrgL1WYgfyuAv4quw0e0oLQGVjWcMQa-UXJlE,652
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- imdclient-0.1.0.dist-info/LICENSE,sha256=cERlftlPR1Vka6DmjkIosLRBZTXXhOsLFU3jw1ELcXs,1065
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- imdclient-0.1.0.dist-info/METADATA,sha256=HimAyna3ttkLycOdoVunxbpkjDkHd-IIYkqEkJldPfQ,6952
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- imdclient-0.1.0.dist-info/WHEEL,sha256=GV9aMThwP_4oNCtvEC2ec3qUYutgWeAzklro_0m4WJQ,91
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- imdclient-0.1.0.dist-info/top_level.txt,sha256=40W62GWiXUT2CbDm-No7GTeJG160wyIMpk1hBNrdkkE,10
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- imdclient-0.1.0.dist-info/RECORD,,
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+ imdclient-0.1.2.dist-info/AUTHORS.md,sha256=R4JTI7mrgL1WYgfyuAv4quw0e0oLQGVjWcMQa-UXJlE,652
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+ imdclient-0.1.2.dist-info/LICENSE,sha256=ixuiBLtpoK3iv89l7ylKkg9rs2GzF9ukPH7ynZYzK5s,35148
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+ imdclient-0.1.2.dist-info/METADATA,sha256=T-0c6SiWcdq5llJbWb2WTcpAOBVyIuSyAJCAnzgDr90,46259
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+ imdclient-0.1.2.dist-info/WHEEL,sha256=OVMc5UfuAQiSplgO0_WdW7vXVGAt9Hdd6qtN4HotdyA,91
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+ imdclient-0.1.2.dist-info/top_level.txt,sha256=40W62GWiXUT2CbDm-No7GTeJG160wyIMpk1hBNrdkkE,10
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+ imdclient-0.1.2.dist-info/RECORD,,
@@ -1,5 +1,5 @@
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  Wheel-Version: 1.0
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- Generator: setuptools (75.1.0)
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+ Generator: setuptools (75.2.0)
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  Root-Is-Purelib: true
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  Tag: py3-none-any
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@@ -1,21 +0,0 @@
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- MIT License
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-
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- Copyright (c) 2024 ljwoods2
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-
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- Permission is hereby granted, free of charge, to any person obtaining a copy
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- of this software and associated documentation files (the "Software"), to deal
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- in the Software without restriction, including without limitation the rights
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- to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
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- copies of the Software, and to permit persons to whom the Software is
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- furnished to do so, subject to the following conditions:
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-
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- The above copyright notice and this permission notice shall be included in all
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- copies or substantial portions of the Software.
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-
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- THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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- IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
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- FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
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- AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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- LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
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- OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
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- SOFTWARE.
@@ -1,143 +0,0 @@
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- Metadata-Version: 2.1
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- Name: imdclient
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- Version: 0.1.0
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- Summary: Receiver for IMD v2 and v3 data from simulation engines like Gromacs, LAMMPS, and NAMD
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- Author-email: Lawson <ljwoods2@asu.edu>
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- Maintainer-email: Lawson <ljwoods2@asu.edu>
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- License: MIT License
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-
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- Copyright (c) 2024 ljwoods2
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-
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- Permission is hereby granted, free of charge, to any person obtaining a copy
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- of this software and associated documentation files (the "Software"), to deal
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- in the Software without restriction, including without limitation the rights
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- to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
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- copies of the Software, and to permit persons to whom the Software is
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- furnished to do so, subject to the following conditions:
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-
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- The above copyright notice and this permission notice shall be included in all
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- copies or substantial portions of the Software.
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-
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- THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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- IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
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- FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
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- AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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- LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
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- OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
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- SOFTWARE.
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-
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- Keywords: molecular simulations
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- Requires-Python: >=3.9
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- Description-Content-Type: text/markdown
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- License-File: LICENSE
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- License-File: AUTHORS.md
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- Requires-Dist: MDAnalysis >=2.7.0
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- Provides-Extra: doc
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- Requires-Dist: sphinx ; extra == 'doc'
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- Requires-Dist: sphinx-rtd-theme ; extra == 'doc'
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- Provides-Extra: test
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- Requires-Dist: pytest >=6.0 ; extra == 'test'
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- Requires-Dist: pytest-xdist >=2.5 ; extra == 'test'
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- Requires-Dist: pytest-cov >=3.0 ; extra == 'test'
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- Requires-Dist: MDAnalysisTests >=2.7.0 ; extra == 'test'
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-
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- IMDClient
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- ==============================
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- [//]: # (Badges)
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-
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- | **Latest release** | [![Last release tag][badge_release]][url_latest_release] ![GitHub commits since latest release (by date) for a branch][badge_commits_since] [![Documentation Status][badge_docs]][url_docs]|
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- | :----------------- | :------- |
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- | **Status** | [![GH Actions Status][badge_actions]][url_actions] [![codecov][badge_codecov]][url_codecov] |
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- | **Community** | [![License: GPL v2][badge_license]][url_license] [![Powered by MDAnalysis][badge_mda]][url_mda]|
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-
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- [badge_actions]: https://github.com/becksteinlab/imdclient/actions/workflows/gh-ci.yaml/badge.svg
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- [badge_codecov]: https://codecov.io/gh/becksteinlab/imdclient/branch/main/graph/badge.svg
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- [badge_commits_since]: https://img.shields.io/github/commits-since/becksteinlab/imdclient/latest
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- [badge_docs]: https://readthedocs.org/projects/imdclient/badge/?version=latest
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- [badge_license]: https://img.shields.io/badge/License-MIT-blue.svg
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- [badge_mda]: https://img.shields.io/badge/powered%20by-MDAnalysis-orange.svg?logoWidth=16&logo=data:image/x-icon;base64,AAABAAEAEBAAAAEAIAAoBAAAFgAAACgAAAAQAAAAIAAAAAEAIAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAJD+XwCY/fEAkf3uAJf97wGT/a+HfHaoiIWE7n9/f+6Hh4fvgICAjwAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACT/yYAlP//AJ///wCg//8JjvOchXly1oaGhv+Ghob/j4+P/39/f3IAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAJH8aQCY/8wAkv2kfY+elJ6al/yVlZX7iIiI8H9/f7h/f38UAAAAAAAAAAAAAAAAAAAAAAAAAAB/f38egYF/noqAebF8gYaagnx3oFpUUtZpaWr/WFhY8zo6OmT///8BAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAgICAn46Ojv+Hh4b/jouJ/4iGhfcAAADnAAAA/wAAAP8AAADIAAAAAwCj/zIAnf2VAJD/PAAAAAAAAAAAAAAAAICAgNGHh4f/gICA/4SEhP+Xl5f/AwMD/wAAAP8AAAD/AAAA/wAAAB8Aov9/ALr//wCS/Z0AAAAAAAAAAAAAAACBgYGOjo6O/4mJif+Pj4//iYmJ/wAAAOAAAAD+AAAA/wAAAP8AAABhAP7+FgCi/38Axf4fAAAAAAAAAAAAAAAAiIiID4GBgYKCgoKogoB+fYSEgZhgYGDZXl5e/m9vb/9ISEjpEBAQxw8AAFQAAAAAAAAANQAAADcAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAjo6Mb5iYmP+cnJz/jY2N95CQkO4pKSn/AAAA7gAAAP0AAAD7AAAAhgAAAAEAAAAAAAAAAACL/gsAkv2uAJX/QQAAAAB9fX3egoKC/4CAgP+NjY3/c3Nz+wAAAP8AAAD/AAAA/wAAAPUAAAAcAAAAAAAAAAAAnP4NAJL9rgCR/0YAAAAAfX19w4ODg/98fHz/i4uL/4qKivwAAAD/AAAA/wAAAP8AAAD1AAAAGwAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAALGxsVyqqqr/mpqa/6mpqf9KSUn/AAAA5QAAAPkAAAD5AAAAhQAAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAADkUFBSuZ2dn/3V1df8uLi7bAAAATgBGfyQAAAA2AAAAMwAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAB0AAADoAAAA/wAAAP8AAAD/AAAAWgC3/2AAnv3eAJ/+dgAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA9AAAA/wAAAP8AAAD/AAAA/wAKDzEAnP3WAKn//wCS/OgAf/8MAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAIQAAANwAAADtAAAA7QAAAMAAABUMAJn9gwCe/e0Aj/2LAP//AQAAAAAAAAAA
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- [badge_release]: https://img.shields.io/github/release-pre/becksteinlab/imdclient.svg
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- [url_actions]: https://github.com/becksteinlab/imdclient/actions?query=branch%3Amain+workflow%3Agh-ci
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- [url_codecov]: https://codecov.io/gh/becksteinlab/imdclient/branch/main
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- [url_docs]: https://imdclient.readthedocs.io/en/latest/?badge=latest
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- [url_latest_release]: https://github.com/becksteinlab/imdclient/releases
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- [url_license]: https://www.gnu.org/licenses/gpl-2.0
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- [url_mda]: https://www.mdanalysis.org
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-
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- Receiver for IMDv3 protocol from simulation engines like Gromacs, LAMMPS, and NAMD.
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-
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- IMDClient is bound by a [Code of Conduct](https://github.com/becksteinlab/imdreader/blob/main/CODE_OF_CONDUCT.md).
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-
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- ### Installation
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-
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- To build IMDClient from source,
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- we highly recommend using virtual environments.
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- If possible, we strongly recommend that you use
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- [Anaconda](https://docs.conda.io/en/latest/) as your package manager.
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- Below we provide instructions both for `conda` and
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- for `pip`.
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-
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- #### With conda
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-
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- Ensure that you have [conda](https://docs.conda.io/projects/conda/en/latest/user-guide/install/index.html) installed.
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-
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- Create a virtual environment and activate it:
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-
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- ```
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- conda create --name imdclient
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- conda activate imdclient
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- ```
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-
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- <!-- Install the development and documentation dependencies:
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-
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- ```
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- conda env update --name imdreader --file devtools/conda-envs/test_env.yaml
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- conda env update --name imdreader --file docs/requirements.yaml
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- ``` -->
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-
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- Build this package from source:
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-
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- ```
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- pip install -e .
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- ```
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-
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- If you want to update your dependencies (which can be risky!), run:
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-
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- ```
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- conda update --all
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- ```
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-
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- And when you are finished, you can exit the virtual environment with:
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-
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- ```
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- conda deactivate
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- ```
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-
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- #### With pip
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-
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- To build the package from source, run:
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-
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- ```
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- pip install .
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- ```
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-
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- If you want to create a development environment, install
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- the dependencies required for tests and docs with:
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-
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- ```
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- pip install ".[test,doc]"
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- ```
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-
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- ### Copyright
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-
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- The IMDClient source code is hosted at https://github.com/becksteinlab/imdclient
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- and is available under the MIT license (see the file [LICENSE](https://github.com/becksteinlab/imdclient/blob/main/LICENSE)).
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-
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- Copyright (c) 2024, Lawson
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-
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-
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- #### Acknowledgements
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-
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- Project based on the
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- [MDAnalysis Cookiecutter](https://github.com/MDAnalysis/cookiecutter-mda) version 0.1.
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- <!-- Please cite [MDAnalysis](https://github.com/MDAnalysis/mdanalysis#citation) when using IMDReader in published work. -->